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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029208 ID=TCONS_00029208|Name=TCONS_00029208|organism=Clytia hemisphaerica|type=transcript|length=1524bp
TTCTTTACTGATGAAATCAAAAAAGGTCGAGACCTAGCTTTTGCATTTTT
ATTTCCAGAGGGTGCATAGAGAAATGCAActacaaaaattttgttttgaa
tttttatctcAATGAAAGCATATCTGCCATAGGCGtcctttttcaatatt
tttggtttaaCATTTTGACCAAAGAGGAGAGCAATTCCACCAGTATGTGA
AGAAAAGGTGTTGTGTACAAAACGACAGTCACCCTTCCAGAATTTAGTTA
AATTTTCATCTGTCTCATCGAGATGAGTCTTGAAGGCTAAGAAGGTCTGA
ATTCCTAAATTTATGGCAGATAGACTTACATTTAGGCAAAGATGTTTTAA
GGCCTCTGAAATTCAAACTCACTAGgttaacaaaatttcaaaatcaaaga
gAAGGAGATAAATCTGAACTTacagtttttcctttttttttttctgatat
tggACCAGGCTTATCTGATCGTGGAGAAGATTTTCGTCTTTTCCAATTTG
CCATATTGACATCTTCCACAATGACCAAATCCATGTTTGGATGATGTGAG
GGTGAATTAACTGGTTGTTTCTAAATTCATTAGTAAGTCTCTTTCCTCGA
GATCCTTAAAGGAAATCATGCTGCctttctttaaaagaaaattataccTT
TCTCTTTCGTGTGATGACATTACCaattcttgttgttgttgttgttgctg
tgtTTCGTTGTGTTTTTCAGTTTCGTTGTTTATTTCTGAATCGTCGTGCT
GTTCCGTATCCTTGGTCTTAACCGAAGTGTTGGTATTTTCGGTAGTGTTG
GTCTTTTCGGTAGTGTTGGTCTTTTCCGTAGTGTTGGTCTTTTCCGTAGT
GTTTGTCTTTTCCGTATCGTTGTTAATTACCGATTCGTTGTCAGGCTCAG
ACTTGTCCGAACCTACGTCATCATGATCATGATGGCGGATTTTGTCCAAA
CACACCGCTCGAAGCCACTCCCCTTCAAATTTGAACTCAAAGTCGTCTAA
ACCTTCTTTCTCACCGTTATTATATGAAATACCCACATTAAAGCCACCAA
TTGCTATGTTGAACTTTTTGGACCTCTTTTGTCTGACGTATCTAATATCG
TTTATGCCGATTTCTTTGGACAGACAATTTGCCACATCATCAGATGAGGC
AAAAGAAGGTATGTTTGGAATGTAATATCTGGCAATAAGTCTTCTTATGC
CAGACATACCTCCTCTTCTCTCGATCAAGCCTTTAATGTGTATTCCATCA
ATTGTTATTCCAAGGtacaaaagttttttaaaatgttccTCTTTCGTGAC
GGTCACCAAATATCTTGATCTGAACCTGGTGTCTCTTATAAATTTGTCCa
tcaaatttaaattcaaagtcaTCCAAACCTTCCTCCTCACCATCGTTATA
ATAAATGCCCACATTAAAGCCTCCAATAGCAATGTTAAACTTTTTGGACT
GTTTTTGTCGAACATATCTTTAATCATTAATGTCAATTTCTTCTTCTGAC
ATTATACAGCGTATTGATCTTAGC Run BLAST on NCBI protein sequence of TCONS_00029208-protein >TCONS_00029208-protein ID=TCONS_00029208-protein|Name=TCONS_00029208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MIKDMFDKNSPKSLTLLLEALMWAFIITMVRRKVWMTLNLNLMDKFIRDT
RFRSRYLVTVTKEEHFKKLLYLGITIDGIHIKGLIERRGGMSGIRRLIAR
YYIPNIPSFASSDDVANCLSKEIGINDIRYVRQKRSKKFNIAIGGFNVGI
SYNNGEKEGLDDFEFKFEGEWLRAVCLDKIRHHDHDDVGSDKSEPDNESV
INNDTEKTNTTEKTNTTEKTNTTEKTNTTENTNTSVKTKDTEQHDDSEIN
NETEKHNETQQQQQQQELVMSSHERERYNFLLKKGSMISFKDLEERDLLM
NLETTS Run BLAST on NCBI transcript from alignment at sc0000728:86778..88301 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029208 ID=TCONS_00029208|Name=TCONS_00029208|organism=Clytia hemisphaerica|type=transcript|length=1524bp|location=Sequence derived from alignment at sc0000728:86778..88301 (Clytia hemisphaerica)
GCTAAGATCAATACGCTGTATAATGTCAGAAGAAGAAATTGACATTAATG
ATTAAAGATATGTTCGACAAAAACAGTCCAAAAAGTTTAACATTGCTATT
GGAGGCTTTAATGTGGGCATTTATTATAACGATGGTGAGGAGGAAGGTTT
GGAtgactttgaatttaaatttgatGGACAAATTTATAAGAGACACCAGG
TTCAGATCAAGATATTTGGTGACCGTCACGAAAGAggaacattttaaaaa
acttttgtaCCTTGGAATAACAATTGATGGAATACACATTAAAGGCTTGA
TCGAGAGAAGAGGAGGTATGTCTGGCATAAGAAGACTTATTGCCAGATAT
TACATTCCAAACATACCTTCTTTTGCCTCATCTGATGATGTGGCAAATTG
TCTGTCCAAAGAAATCGGCATAAACGATATTAGATACGTCAGACAAAAGA
GGTCCAAAAAGTTCAACATAGCAATTGGTGGCTTTAATGTGGGTATTTCA
TATAATAACGGTGAGAAAGAAGGTTTAGACGACTTTGAGTTCAAATTTGA
AGGGGAGTGGCTTCGAGCGGTGTGTTTGGACAAAATCCGCCATCATGATC
ATGATGACGTAGGTTCGGACAAGTCTGAGCCTGACAACGAATCGGTAATT
AACAACGATACGGAAAAGACAAACACTACGGAAAAGACCAACACTACGGA
AAAGACCAACACTACCGAAAAGACCAACACTACCGAAAATACCAACACTT
CGGTTAAGACCAAGGATACGGAACAGCACGACGATTCAGAAATAAACAAC
GAAACTGAAAAACACAACGAAacacagcaacaacaacaacaacaagaatt
GGTAATGTCATCACACGAAAGAGAAAggtataattttcttttaaagaaag
GCAGCATGATTTCCTTTAAGGATCTCGAGGAAAGAGACTTACTAATGAAT
TTAGAAACAACCAGTTAATTCACCCTCACATCATCCAAACATGGATTTGG
TCATTGTGGAAGATGTCAATATGGCAAATTGGAAAAGACGAAAATCTTCT
CCACGATCAGATAAGCCTGGTccaatatcagaaaaaaaaaaaggaaaaac
tgtAAGTTCAGATTTATCTCCTTctctttgattttgaaattttgttaacC
TAGTGAGTTTGAATTTCAGAGGCCTTAAAACATCTTTGCCTAAATGTAAG
TCTATCTGCCATAAATTTAGGAATTCAGACCTTCTTAGCCTTCAAGACTC
ATCTCGATGAGACAGATGAAAATTTAACTAAATTCTGGAAGGGTGACTGT
CGTTTTGTACACAACACCTTTTCTTCACATACTGGTGGAATTGCTCTCCT
CTTTGGTCAAAATGttaaaccaaaaatattgaaaaaggaCGCCTATGGCA
GATATGCTTTCATTgagataaaaattcaaaacaaaatttttgtagTTGCA
TTTCTCTATGCACCCTCTGGAAATAAAAATGCAAAAGCTAGGTCTCGACC
TTTTTTGATTTCATCAGTAAAGAA Coding sequence (CDS) from alignment at sc0000728:86778..88301 >TCONS_00029208 ID=TCONS_00029208|Name=TCONS_00029208|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0000728:86778..88301 (Clytia hemisphaerica)
ATGATTAAAGATATGTTCGACAAAAACAGTCCAAAAAGTTTAACATTGCT
ATTGGAGGCTTTAATGTGGGCATTTATTATAACGATGGTGAGGAGGAAGG
TTTGGAtgactttgaatttaaatttgatGGACAAATTTATAAGAGACACC
AGGTTCAGATCAAGATATTTGGTGACCGTCACGAAAGAggaacattttaa
aaaacttttgtaCCTTGGAATAACAATTGATGGAATACACATTAAAGGCT
TGATCGAGAGAAGAGGAGGTATGTCTGGCATAAGAAGACTTATTGCCAGA
TATTACATTCCAAACATACCTTCTTTTGCCTCATCTGATGATGTGGCAAA
TTGTCTGTCCAAAGAAATCGGCATAAACGATATTAGATACGTCAGACAAA
AGAGGTCCAAAAAGTTCAACATAGCAATTGGTGGCTTTAATGTGGGTATT
TCATATAATAACGGTGAGAAAGAAGGTTTAGACGACTTTGAGTTCAAATT
TGAAGGGGAGTGGCTTCGAGCGGTGTGTTTGGACAAAATCCGCCATCATG
ATCATGATGACGTAGGTTCGGACAAGTCTGAGCCTGACAACGAATCGGTA
ATTAACAACGATACGGAAAAGACAAACACTACGGAAAAGACCAACACTAC
GGAAAAGACCAACACTACCGAAAAGACCAACACTACCGAAAATACCAACA
CTTCGGTTAAGACCAAGGATACGGAACAGCACGACGATTCAGAAATAAAC
AACGAAACTGAAAAACACAACGAAacacagcaacaacaacaacaacaaga
attGGTAATGTCATCACACGAAAGAGAAAggtataattttcttttaaaga
aagGCAGCATGATTTCCTTTAAGGATCTCGAGGAAAGAGACTTACTAATG
AATTTAGAAACAACCAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029208-exon-sc0000728-1491911889:86778..88301 | TCONS_00029208-exon-sc0000728-1491911889:86778..88301 | Clytia hemisphaerica | exon |
| TCONS_00029208-exon-sc0000728-1510915933:86778..88301 | TCONS_00029208-exon-sc0000728-1510915933:86778..88301 | Clytia hemisphaerica | exon |
| TCONS_00029208-exon-sc0000728-1575043694:86778..88301 | TCONS_00029208-exon-sc0000728-1575043694:86778..88301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000728 | supercontig | sc0000728:86778..88301 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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