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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029217 ID=TCONS_00029217|Name=TCONS_00029217|organism=Clytia hemisphaerica|type=transcript|length=952bp
ATCCATCTTAATATGTTTCACGTTGCTGTGTCTATTACGAACCACCCAAA
CCGCCCCACCACCGCCAGCGGCAATTTCATCGGAGACGCTCATATACTCT
TGTATATTACAATCTGCAGGGACCTTAGAAACGGAAGAGAACATTCGAAG
TGCCCTGAAGGATATGCAACGGTTTGCAGGTATGTTGACAATTATATTGA
ATGTATTGTTTTTGAGTTTATGTATCTACCATGTTGAGGACGGTGGAGTG
ACTTGAACGACGAAACTTTTCGCAATTTACAAATACTACATCTTCAATGA
CATTAATGGAACACTGATAAAGTTAGGGACCATCCAAAACAAATACGGCC
TGCCGGATGCCGTCAACAAGATCGATGCTGCATTCATTTGGATTGGCAAT
GGACGTGTTTATCTGTTTGTCGATAAAAAGTATTATCGATTTGATGAGAA
TCGAGCAAGTATCGATTATGGATATCCGCGAGTCATTAAAGACAATTGGA
AAGGTTTGCCGGAAAGTGTGGATGCAGTATCCATATGGAGAAGCAGAGTG
ACTTATTTCTTTAAAGTAAAATCATTCTACCGATTCAATGATGAACAAAT
CCGTGTCAAAGATAATTACCCAAAACCAATCAACCCTATCTGAACGAAAT
GCACTGTGGGTGAATTGAGTACCCAGAATGCTtcagtgacgtcaaacgct
tcTATTTTGGTCACCTTTGGAATGTTGGCAATCATGAAATTCCTATTTTT
GTAAGGTGCTAgatatttttaaactttccaTGTTAATGtgtaaattttta
agaactgATCATTCTTAGAGGCTAGGTCGCGATATATATTTGCTTCACAG
TACTTTAAGGTTCATGTTAATACAATCATATTTTACATTATTTATTTTAC
AGAGATTTCTATCAGTGGTAAAATATTCTTTCACATCCATATTATATTTG
TA Run BLAST on NCBI transcript from alignment at sc0000730:48330..50021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029217 ID=TCONS_00029217|Name=TCONS_00029217|organism=Clytia hemisphaerica|type=transcript|length=1692bp|location=Sequence derived from alignment at sc0000730:48330..50021+ (Clytia hemisphaerica)
ATCCATCTTAATATGTTTCACGTTGCTGTGTCTATTACGAACCACCCAAA
CCGCCCCACCACCGCCAGCGGCAATTTCATCGGAGACGCTCATATACTCT
TGTATATTACAATCTGCAGGGACCTTAGAAACGGAAGAGAACATTCGAAG
TGCCCTGAAGGATATGCAACGGTTTGCAGGTATGTTGACAATTATATTGA
ATGTATTGTTTTTGAGTTTATGTATCTACCATGTTGAGGACGGTGGAGTG
ACTTGAACGACGAAACTTTTCGCAATTTACAAATACTACATCTTCAATGA
CATTAATGGAACACTGATAAAGTTAGGGACCATCCAAAACAAATACGGCC
TGCCGGATGCCGTCAACAAGATCGATGCTGCATTCATTTGGATTGGCAAT
GGACGTGTTTATCTGTTTGTCGATAAAAAGTATTATCGATTTGATGAGAA
TCGAGCAAGTATCGATTATGGATATCCGCGAGTCATTAAAGACAATTGGA
AAGGTTTGCCGGAAAGTGTGGATGCAGTATCCATATGGAGAAGCAGAGTG
ACTTATTTCTTTAAAGGtaagaaatttaaaattgtaGAGGAATGGGTTCT
TTTAGCAAGCACTGAGGTCTTAAAAAGCATCGTGTAGTTTTAAAGTGTTT
GATAtaaggtgaaaataaaaaaatgtactgtttccggaaaccggccgggt
gaaaataaaatattttctgacccggccgcagactatgggttcatctgtAT
GGTTCATTATAGAGAAAATCAAGTTAACCGTTTAAGCTATCAAACatcgt
ttggttagatattgccgcttgtaaatcaagttctgttcgttagtagttga
tacattataATTTAGGGCTTACTTCAAACTGTTTGTACATTAAAgctatc
tttaaagttctatttcagtGATCTTAAGtaatcaaaaatagcaaaaaaaa
ttgtggCCGGCCGCAttagagcttttttccttcacccgcattgcggaaac
actacattttttaattttcgcctAATTAACTTTATTTCTAAAGTGTCTAC
CATTTATccgaaagatgaaaaaaaaaatcatattaatTCTTTGTCTGAGA
CACCATGCTCAGCTTGAGTCTACAACTATTGAATTATCAGGTGAAATATA
ATATTGGGTCTAAGAGACTCTAAGAGAACCATGATAGTATAGGCTGATTT
CTGAGCGTCCTCTGGTACACAAAAATCTAATCATCAATTTATAAAATTTC
TCTGATTTCACCATGGCTTATAGTTTAAATTCATCATATCCATTTCTTTT
CATTAGTAAAATCATTCTACCGATTCAATGATGAACAAATCCGTGTCAAA
GATAATTACCCAAAACCAATCAACCCTATCTGAACGAAATGCACTGTGGG
TGAATTGAGTACCCAGAATGCTtcagtgacgtcaaacgcttcTATTTTGG
TCACCTTTGGAATGTTGGCAATCATGAAATTCCTATTTTTGTAAGGTGCT
AgatatttttaaactttccaTGTTAATGtgtaaatttttaagaactgATC
ATTCTTAGAGGCTAGGTCGCGATATATATTTGCTTCACAGTACTTTAAGG
TTCATGTTAATACAATCATATTTTACATTATTTATTTTACAGAGATTTCT
ATCAGTGGTAAAATATTCTTTCACATCCATATTATATTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029217-exon-sc0000730-1491911889:48330..48895 | TCONS_00029217-exon-sc0000730-1491911889:48330..48895 | Clytia hemisphaerica | exon |
| TCONS_00029217-exon-sc0000730-1510915933:48330..48895 | TCONS_00029217-exon-sc0000730-1510915933:48330..48895 | Clytia hemisphaerica | exon |
| TCONS_00029217-exon-sc0000730-1575043694:48330..48895 | TCONS_00029217-exon-sc0000730-1575043694:48330..48895 | Clytia hemisphaerica | exon |
| TCONS_00029217-exon-sc0000730-1491911889:49636..50021 | TCONS_00029217-exon-sc0000730-1491911889:49636..50021 | Clytia hemisphaerica | exon |
| TCONS_00029217-exon-sc0000730-1510915933:49636..50021 | TCONS_00029217-exon-sc0000730-1510915933:49636..50021 | Clytia hemisphaerica | exon |
| TCONS_00029217-exon-sc0000730-1575043694:49636..50021 | TCONS_00029217-exon-sc0000730-1575043694:49636..50021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000730 | supercontig | sc0000730:48330..50021 + |
Blast
BLAST of TCONS_00029217 vs. Swiss-Prot (Human)
Match: MMP25 (Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP25 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.163e-17 Identity = 56/186 (30.11%), Postives = 90/186 (48.39%), Query Frame = 2
Query: 107 LQSAGTLETEENIRSALKDMQRFAGMLTIILNVLFLSLCIYHVEDGGVT*TTKLFAIYKYYIFND--INGTLIKLGTIQNKYGLPDAVNKIDAAFIWIGNGRVYLFVDKKYYRFDENRASIDYGYPRVIKDNWKGLPESVDAVSIWRSRVTYFFKVKSFYRFNDEQIRVKDNYPKPINPI*TKCTV 658
LQ +G L + R + RF L + V+ + + DG + LF+ ++++F D + G L + GLP ++DA F W NG+ YL ++Y+R+DE A D GYPR + W+G P S D V++ + TYFFK ++RF I+ + + P+P+ P C
Sbjct: 342 LQPSGQLVSPRPAR-----LHRFWEGLPAQVRVVQAAYARH--RDGRIL----LFSGPQFWVFQDRQLEGGARPL----TELGLPPG-EEVDAVFSWPQNGKTYLVRGRQYWRYDEAAARPDPGYPRDLS-LWEGAPPSPDDVTVSNAGDTYFFKGAHYWRFPKNSIKTEPDAPQPMGPNWLDCPA 510
The following BLAST results are available for this feature:
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