TCONS_00029234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029234
Unique NameTCONS_00029234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029234 ID=TCONS_00029234|Name=TCONS_00029234|organism=Clytia hemisphaerica|type=transcript|length=770bp
TTTTGATAGTCgctattttctcattttgagcATAATTAGGTCATTTCTTT
TTCCAAAAGAGCTGAATAGCTTCTTGCAAAACCTTCACAGCATGGTGTGA
AAAGCCTAGCTAAAGTATTattaatttcaaataattttgacttgaaatca
tatgtaatttttgtacaatttttgaatatttttggacAATTCCCTTCATA
GCGGCTAAATAGAAACACGGATTTGCCTATtgcaacacccctgtctcttt
ggtcataaattttttttctagtcTCTACTTCAGCTTCGGAAGTACTTTTA
GTCTTCTTTCTTTTGCTCCTACGCCTGTTTCTTACTTCTAtgtgatttta
tcaaaaatgacCTCAGCTAGAATTAGAACGACATTGATGCCCTTTttaat
atttcccttttttcggtatgttgttttttgttttggttaatcAACTCATC
TGAATCGTGCTATACacataaaatttcatttatttacaaAGTATGTCTAC
ATGGGgcagaaaaatatttctatttccGTGtcaaaaaatacctttttcac
TGATGAATGGAGGTATTTCTTCGCATACCACATGAATTGAAGATTAGGTA
TCTTCATTGAAAACGTCTACCATCTTGAAATGAATGGAAGCGGTAAACAT
ATTGTGTGTTACTATAGAAACGTTAAATAACGGTTTTGATGAGATATGAA
TTGCAATACCTCTGGATGATGTAAATATTGTCTTGTTTTGCTCCATCTTT
GAATAGAGAATGTGAATtat
Run BLAST on NCBI

transcript from alignment at sc0000730:71598..72367

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029234 ID=TCONS_00029234|Name=TCONS_00029234|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0000730:71598..72367 (Clytia hemisphaerica)
ataATTCACATTCTCTATTCAAAGATGGAGCAAAACAAGACAATATTTAC
ATCATCCAGAGGTATTGCAATTCATATCTCATCAAAACCGTTATTTAACG
TTTCTATAGTAACACACAATATGTTTACCGCTTCCATTCATTTCAAGATG
GTAGACGTTTTCAATGAAGATACCTAATCTTCAATTCATGTGGTATGCGA
AGAAATACCTCCATTCATCAgtgaaaaaggtattttttgaCACggaaata
gaaatatttttctgcCCCATGTAGACATACTttgtaaataaatgaaattt
tatgtGTATAGCACGATTCAGATGAGTTgattaaccaaaacaaaaaacaa
cataccgaaaaaagggaaatattaaAAAGGGCATCAATGTCGTTCTAATT
CTAGCTGAGgtcatttttgataaaatcacaTAGAAGTAAGAAACAGGCGT
AGGAGCAAAAGAAAGAAGACTAAAAGTACTTCCGAAGCTGAAGTAGAgac
tagaaaaaaaatttatgaccaaagagacaggggtgttgcaATAGGCAAAT
CCGTGTTTCTATTTAGCCGCTATGAAGGGAATTgtccaaaaatattcaaa
aattgtacaaaaattacatatgatttcaagtcaaaattatttgaaattaa
tAATACTTTAGCTAGGCTTTTCACACCATGCTGTGAAGGTTTTGCAAGAA
GCTATTCAGCTCTTTTGGAAAAAGAAATGACCTAATTATgctcaaaatga
gaaaatagcGACTATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016646XLOC_016646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029234-exon-sc0000730-1491911889:71598..72367TCONS_00029234-exon-sc0000730-1491911889:71598..72367Clytia hemisphaericaexon
TCONS_00029234-exon-sc0000730-1510915933:71598..72367TCONS_00029234-exon-sc0000730-1510915933:71598..72367Clytia hemisphaericaexon
TCONS_00029234-exon-sc0000730-1575043694:71598..72367TCONS_00029234-exon-sc0000730-1575043694:71598..72367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000730supercontigsc0000730:71598..72367 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.406526	0.304468	0.159874	0.19803	0.0640708	0.252706	0.168236	0.305751	0.0359099	0.0770736	0	0.243297	0.537806	0.492428	0.73373	0.626304	0	0.131844	0.407389	0.302988	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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