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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029238 ID=TCONS_00029238|Name=TCONS_00029238|organism=Clytia hemisphaerica|type=transcript|length=1161bp
NNgaaaataatattttgacgctcgaaaagggcgtaaaaagagctttcttt
tggCGTATCACATTGCTATGTTTCGGCCGAGATTGAAGAAATAAGTCCTT
AGCAATGGGATTTTTTCTGTTGCTAGGGCGATTTTTCAAGCACCCATCag
gataaaaatgctcactgcggcctgaatgataaagatatagctctgaaatt
atcaggagatgttcagaaagacctaaggatctcaaaacacccaaaaacca
gaattcgacaattttttcgatgattttttatttttgggtagactaccacc
ttgaGTCTGTCTTTTCTATGGATACTGATTCGTTTATTCTGTGTTTGAGA
CGTTTTATTTGTAGAAGAGGTTCTATCAGGATGATAAGAAGTGATAATGG
TACGAATTTTGTTGGTTGTCAAAGTGAGTTGAAAGAATTGTTTCGGAGTC
TTGATCATAGTAAAATCAAATCGTTTTTGAGAGATGAGTTCAATGCTGAT
TACATCGTTTGGGAAAGGAATCCCCCATATTCGAGCCATTTTGGTGGTGT
TTGGGAGCGTCAAATTCGTAGTGCTTGCTCGTAATGTTTTGAATGGTATT
CTGTTGACACATAGCCAATCGTACAATGATGAGTCTTTCAGGACATTGCT
GTGTGAGGTTGAATGTATTTTGAATTCTTGACCTTTGACTGTGGAGAATA
TCTCCGATCCTTTGAGTTTGAAGCCAATAACTCCAATGATGCTGCTGACT
AGAAAGTCCAAGATTGTGTTACCACCACCTGGTGCCTTCAGTGATTCATC
AGCTGGATATTCACGAAGACAATGGAAACGTGTTCAACATGCTGTCAACG
AATTTTGGACTCGTtgacaaaaggaatttttaacaaaacttcAAGAACGA
ACGAAATGGACGAGCAAGAGACGTAGTTTTCAAATTGGTGATATTGTGCT
GCTTAAGACGGACGACAAGCGAAATCAATGGCCGCTCGGGCGCATAATTG
TTGCCAATACGGACGAACACGGTGACTGTAGAAAGGTGACAGTTAAAACA
TTGTACGGTGAATTCGAACGACCTATTTCTAACGTTGTGCTGTTGGAAGA
ATGCGATTCCCCACCGAGGAGTTTTCAAGATTAAGAATCTTGAAGGGGAG
CCAGTTGTTGA Run BLAST on NCBI protein sequence of TCONS_00029238-protein >TCONS_00029238-protein ID=TCONS_00029238-protein|Name=TCONS_00029238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MIFYFWVDYHLESVFSMDTDSFILCLRRFICRRGSIRMIRSDNGTNFVGC
QSELKELFRSLDHSKIKSFLRDEFNADYIVWERNPPYSSHFGGVWERQIR
SACS Run BLAST on NCBI transcript from alignment at sc0000730:164210..165370 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029238 ID=TCONS_00029238|Name=TCONS_00029238|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at sc0000730:164210..165370 (Clytia hemisphaerica)
TCAACAACTGGCTCCCCTTCAAGATTCTTAATCTTGAAAACTCCTCGGTG
GGGAATCGCATTCTTCCAACAGCACAACGTTAGAAATAGGTCGTTCGAAT
TCACCGTACAATGTTTTAACTGTCACCTTTCTACAGTCACCGTGTTCGTC
CGTATTGGCAACAATTATGCGCCCGAGCGGCCATTGATTTCGCTTGTCGT
CCGTCTTAAGCAGCACAATATCACCAATTTGAAAACTACGTCTCTTGCTC
GTCCATTTCGTTCGTTCTTgaagttttgttaaaaattccttttgtcaACG
AGTCCAAAATTCGTTGACAGCATGTTGAACACGTTTCCATTGTCTTCGTG
AATATCCAGCTGATGAATCACTGAAGGCACCAGGTGGTGGTAACACAATC
TTGGACTTTCTAGTCAGCAGCATCATTGGAGTTATTGGCTTCAAACTCAA
AGGATCGGAGATATTCTCCACAGTCAAAGGTCAAGAATTCAAAATACATT
CAACCTCACACAGCAATGTCCTGAAAGACTCATCATTGTACGATTGGCTA
TGTGTCAACAGAATACCATTCAAAACATTACGAGCAAGCACTACGAATTT
GACGCTCCCAAACACCACCAAAATGGCTCGAATATGGGGGATTCCTTTCC
CAAACGATGTAATCAGCATTGAACTCATCTCTCAAAAACGATTTGATTTT
ACTATGATCAAGACTCCGAAACAATTCTTTCAACTCACTTTGACAACCAA
CAAAATTCGTACCATTATCACTTCTTATCATCCTGATAGAACCTCTTCTA
CAAATAAAACGTCTCAAACACAGAATAAACGAATCAGTATCCATAGAAAA
GACAGACtcaaggtggtagtctacccaaaaataaaaaatcatcgaaaaaa
ttgtcgaattctggtttttgggtgttttgagatccttaggtctttctgaa
catctcctgataatttcagagctatatctttatcattcaggccgcagtga
gcatttttatcctGATGGGTGCTTGAAAAATCGCCCTAGCAACAGAAAAA
ATCCCATTGCTAAGGACTTATTTCTTCAATCTCGGCCGAAACATAGCAAT
GTGATACGccaaaagaaagctctttttacgcccttttcgagcgtcaaaat
attattttcNN Coding sequence (CDS) from alignment at sc0000730:164210..165370 >TCONS_00029238 ID=TCONS_00029238|Name=TCONS_00029238|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000730:164210..165370 (Clytia hemisphaerica)
TTACGAGCAAGCACTACGAATTTGACGCTCCCAAACACCACCAAAATGGC
TCGAATATGGGGGATTCCTTTCCCAAACGATGTAATCAGCATTGAACTCA
TCTCTCAAAAACGATTTGATTTTACTATGATCAAGACTCCGAAACAATTC
TTTCAACTCACTTTGACAACCAACAAAATTCGTACCATTATCACTTCTTA
TCATCCTGATAGAACCTCTTCTACAAATAAAACGTCTCAAACACAGAATA
AACGAATCAGTATCCATAGAAAAGACAGACtcaaggtggtagtctaccca
aaaataaaaaatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029238-exon-sc0000730-1491911889:164210..165370 | TCONS_00029238-exon-sc0000730-1491911889:164210..165370 | Clytia hemisphaerica | exon |
| TCONS_00029238-exon-sc0000730-1510915933:164210..165370 | TCONS_00029238-exon-sc0000730-1510915933:164210..165370 | Clytia hemisphaerica | exon |
| TCONS_00029238-exon-sc0000730-1575043694:164210..165370 | TCONS_00029238-exon-sc0000730-1575043694:164210..165370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000730 | supercontig | sc0000730:164210..165370 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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