TCONS_00029240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029240
Unique NameTCONS_00029240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029240 ID=TCONS_00029240|Name=TCONS_00029240|organism=Clytia hemisphaerica|type=transcript|length=463bp
CAGCTATTTGTGGTAATGAGGCAAGGGCCGATGTTAGTGGTAACGGTTTT
TGGACACGGTTTCAGAGAGCATTCTTTGATGTTAAGGTTTCAAAACTTCT
AGCTCCGAGTTATCGTGAAAAATCTGTTTTAATTACATTAGCAAGCTTTG
AGAAGCAGAAGAAAAGAGCTTATAACCAACGAATCCAGGAAATTGAGAGA
GGGACTTTCACACCATTGATTTTTGGTGCTACTGGTGGAACTTCCCGTGA
ATGTTCGATATTTCTAAATAGACTTTCTGAGAAAATCTCAGAGAAGCAAA
ATTGCATAAAGAGTGTCGTGATCGCCGGGATTCGACGCAAGATTTCCTTC
ATCTTGATCCGATCAGATCAGTTGTTGCTTGTCTGAGAGGTGAACGTGCG
AGTCGCACATTTACCCCAGACCAAGTAGCACTGAAAGATCAAAAGCTGAA
CGAAGTCTTGTCG
Run BLAST on NCBI

protein sequence of TCONS_00029240-protein

>TCONS_00029240-protein ID=TCONS_00029240-protein|Name=TCONS_00029240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
AICGNEARADVSGNGFWTRFQRAFFDVKVSKLLAPSYREKSVLITLASFE
KQKKRAYNQRIQEIERGTFTPLIFGATGGTSRECSIFLNRLSEKISEKQN
CIKSVVIAGIRRKISFILIRSDQLLLV
Run BLAST on NCBI

transcript from alignment at sc0000731:78225..78809-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029240 ID=TCONS_00029240|Name=TCONS_00029240|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at sc0000731:78225..78809- (Clytia hemisphaerica)
CAGCTATTTGTGGTAATGAGGCNATGCGTTGGCGATGATGTTGAAAGAAG
TTGCACATGATGTGAAAATTGAACCCACATTATTGGAACTCACAAGAACT
GATAGTGCTGATTTTAAGAAATCAGATATTTGTGGTAATGAGGCAAGGGC
CGATGTTAGTGGTAACGGTTTTTGGACACGGTTTCAGAGAGCATTCTTTG
ATGTTAAGGTTTCAAAACTTCTAGCTCCGAGTTATCGTGAAAAATCTGTT
TTAATTACATTAGCAAGCTTTGAGAAGCAGAAGAAAAGAGCTTATAACCA
ACGAATCCAGGAAATTGAGAGAGGGACTTTCACACCATTGATTTTTGGTG
CTACTGGTGGAACTTCCCGTGAATGTTCGATATTTCTAAATAGACTTTCT
GAGAAAATCTCAGAGAAGCAAAATTGCATAAAGAGTGTCGTGATCGCCGG
GATTCGACGCAAGATTTCCTTCATCTTGATCCGATCAGATCAGTTGTTGC
TTGTCTGAGAGGTGAACGTGCGAGTCGCACATTTACCCCAGACCAAGTAG
CACTGAAAGATCAAAAGCTGAACGAAGTCTTGTCG

Coding sequence (CDS) from alignment at sc0000731:78225..78809-

>TCONS_00029240 ID=TCONS_00029240|Name=TCONS_00029240|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000731:78225..78809- (Clytia hemisphaerica)
GCAAGGGCCGATGTTAGTGGTAACGGTTTTTGGACACGGTTTCAGAGAGC
ATTCTTTGATGTTAAGGTTTCAAAACTTCTAGCTCCGAGTTATCGTGAAA
AATCTGTTTTAATTACATTAGCAAGCTTTGAGAAGCAGAAGAAAAGAGCT
TATAACCAACGAATCCAGGAAATTGAGAGAGGGACTTTCACACCATTGAT
TTTTGGTGCTACTGGTGGAACTTCCCGTGAATGTTCGATATTTCTAAATA
GACTTTCTGAGAAAATCTCAGAGAAGCAAAATTGCATAAAGAGTGTCGTG
ATCGCCGGGATTCGACGCAAGATTTCCTTCATCTTGATCCGATCAGATCA
GTTGTTGCTTGTCTGAGCTATTTGTGGTAATGAGGCAAGGGCCGATGTTA
GTGGTAACGGTTTTTGGACACGGTTTCAGAGAGCATTCTTTGATGTTAAG
GTTTCAAAACTTCTAGCTCCGAGTTATCGTGAAAAATCTGTTTTAATTAC
ATTAGCAAGCTTTGAGAAGCAGAAGAAAAGAGCTTATAACCAACGAATCC
AGGAAATTGAGAGAGGGACTTTCACACCATTGATTTTTGGTGCTACTGGT
GGAACTTCCCGTGAATGTTCGATATTTCTAAATAGACTTTCTGAGAAAAT
CTCAGAGAAGCAAAATTGCATAAAGAGTGTCGTGATCGCCGGGATTCGAC
GCAAGATTTCCTTCATCTTGATCCGATCAGATCAGTTGTTGCTTGTCTGA
GCTATTTGTGGTAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016652XLOC_016652Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029240-proteinTCONS_00029240-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029240-exon-sc0000731-1575043694:78790..78809TCONS_00029240-exon-sc0000731-1575043694:78790..78809Clytia hemisphaericaexon
TCONS_00029240-exon-sc0000731-1575043694:78225..78667TCONS_00029240-exon-sc0000731-1575043694:78225..78667Clytia hemisphaericaexon
TCONS_00029240-exon-sc0000731-1510915933:78790..78809TCONS_00029240-exon-sc0000731-1510915933:78790..78809Clytia hemisphaericaexon
TCONS_00029240-exon-sc0000731-1510915933:78225..78667TCONS_00029240-exon-sc0000731-1510915933:78225..78667Clytia hemisphaericaexon
TCONS_00029240-exon-sc0000731-1491911889:78790..78809TCONS_00029240-exon-sc0000731-1491911889:78790..78809Clytia hemisphaericaexon
TCONS_00029240-exon-sc0000731-1491911889:78225..78667TCONS_00029240-exon-sc0000731-1491911889:78225..78667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000731supercontigsc0000731:78225..78809 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.698381	0.841106	1.7987	1.86085	0	0.709177	0	0	0.572678	0	0.206784	0.0528842	0.731081	0.160149	0.425992	0.916303	0.715402	0.562401	1.59316	1.7138	1.03665	0.0455874	0	0.651182	0.869818	0.554187	1.03759	0.126759	0	0.499145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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