TCONS_00029250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029250
Unique NameTCONS_00029250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029250 ID=TCONS_00029250|Name=TCONS_00029250|organism=Clytia hemisphaerica|type=transcript|length=637bp
NCTGAAATCCACTGAAGGTACCACACAAGGTGATCCCATTGCAATGGCTT
TATACGGTCTAAGTTTGTTACCACTAACAACTCATCTCAAGAAGAAATCA
GCTCGAATCAAACAAGTAGCATATGCAGATGATCTTACAGGAGCTGGCAA
GATTAATGCCCTGAAAGCTTGGTGGGATGTTCTATCTGAAGTCGGTCCAA
ATATCGGATATTACCCGAAATCTTCCAAATCGTGGTTGAATATGAAGAGT
ATGCTAGAAGTGTCTTCGCAACAACTTCTATCAAAGTGACTGTCAAAGGA
CGAAAAAATCTCGGCGCCTTGATCGGGAATGCAGCTTTCCGCAAGGATTA
CATCGAAGCCAAAGTTGCAGAATGGGTCAAAGAGCTTACTCTTTTGGCGA
CGATAGCATGTTCATAACCACAAGCTGCGTATGTGTCATTCGTAGTTGGA
TATCGCCAAAAATTCAACTACATATTCCGTACGGTCAAAGACCTCGACGA
AAACCTGATACCACTCGAAAACGTCATCAAATCGCACTTGATTCCCGCCT
TCTGCGATGGAAGACAATGCAATGATACAGAACGTCGCTTGATGGCTTTG
CCGACGAAATTCGGGGGACTTGGTATCATAAATGTAA
Run BLAST on NCBI

transcript from alignment at sc0000731:79208..79844

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029250 ID=TCONS_00029250|Name=TCONS_00029250|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at sc0000731:79208..79844 (Clytia hemisphaerica)
TTACATTTATGATACCAAGTCCCCCGAATTTCGTCGGCAAAGCCATCAAG
CGACGTTCTGTATCATTGCATTGTCTTCCATCGCAGAAGGCGGGAATCAA
GTGCGATTTGATGACGTTTTCGAGTGGTATCAGGTTTTCGTCGAGGTCTT
TGACCGTACGGAATATGTAGTTGAATTTTTGGCGATATCCAACTACGAAT
GACACATACGCAGCTTGTGGTTATGAACATGCTATCGTCGCCAAAAGAGT
AAGCTCTTTGACCCATTCTGCAACTTTGGCTTCGATGTAATCCTTGCGGA
AAGCTGCATTCCCGATCAAGGCGCCGAGATTTTTTCGTCCTTTGACAGTC
ACTTTGATAGAAGTTGTTGCGAAGACACTTCTAGCATACTCTTCATATTC
AACCACGATTTGGAAGATTTCGGGTAATATCCGATATTTGGACCGACTTC
AGATAGAACATCCCACCAAGCTTTCAGGGCATTAATCTTGCCAGCTCCTG
TAAGATCATCTGCATATGCTACTTGTTTGATTCGAGCTGATTTCTTCTTG
AGATGAGTTGTTAGTGGTAACAAACTTAGACCGTATAAAGCCATTGCAAT
GGGATCACCTTGTGTGGTACCTTCAGTGGATTTCAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016662XLOC_016662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029250-exon-sc0000731-1491911889:79208..79844TCONS_00029250-exon-sc0000731-1491911889:79208..79844Clytia hemisphaericaexon
TCONS_00029250-exon-sc0000731-1510915933:79208..79844TCONS_00029250-exon-sc0000731-1510915933:79208..79844Clytia hemisphaericaexon
TCONS_00029250-exon-sc0000731-1575043694:79208..79844TCONS_00029250-exon-sc0000731-1575043694:79208..79844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000731supercontigsc0000731:79208..79844 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.79746	0.305392	0.80908	0.734576	0.22819	0.706668	1.40338	0.825797	0.967141	1.93027	0.671845	0.654739	3.06641	3.31443	0.791938	0.689149	0.311133	0.765364	4.31768	4.87183	0.671204	0.117275	0.285127	0.60485	1.63262	1.90627	0.981549	0	0.276011	0.374948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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