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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029264 ID=TCONS_00029264|Name=TCONS_00029264|organism=Clytia hemisphaerica|type=transcript|length=1997bp
ATTTTAGCAAGACAAGtttataaagattaaaaaacaaataaaaaatgagt
TCCAATTTGAAGCTAGAAAAGACCAAGTTCCCAACAGCCGATTATTTGGA
AAGCATCTTATCAAAAGTTGGAGATTGGGATTGTCTTCAATATCTGGCAG
GTGACAAGATTGTATTTGAGGATATTGAACCAAAAGGTTTTGAGATTGTG
GAGACGTCGATTCCGAATAATCAACCGAAGCAGGAAGATGAGGACTgcga
agaagatgaagaagaagatgatgatgatgatgatgatgatccCGATGCAA
TTAGTGCTACGATGAAACTACGTGTTGCTGTTAAAAccaaggaagaaaaa
attaaagaaatgttTAGTGAAGCAGGGATCACTGTTAAGAAGTATAAGAT
TATTTCCAGTGATTCTTCCCATCACGATATCGAAGCTTCTATATCGTTTG
ATTACTGTAGTACTGAAGTGATCGAATCTTCATTCCTTGATATGTTTTGG
AAGACAAGGATGAATGCAGTTATCACTGAAGGAGTTTGCTATTCAAACTC
CAAAGTTCCTGATAATTTACGCGATTCATTGAGAAATAATATTGATAAAC
TTGCAAACGAAACTGAAATTGATTTTCATCCAAATTCGAATGATGTTGTT
AGAGATTTGGTGCATCCTGCTTTGTATTCTTATAttaagggtgtttcaaa
gttgaAGAAATTACCTGATGTAGATCCTCCAACATCCAAGAAGTCTAAAG
AAGAGTCAGAAAAAGATTTCTGGGGACGACCTTACGAAGATTCAAAATTC
CAATGGCTTCCAACACCATTCCATGTTTCCGAAGATGGCAAATGCTCAAT
TAAAGAGTATATCAACAACCTTGATAAGGATAAGTTTCCAGAGATGTATG
ATGACCTAGAAAAATTGTTTGAGGTTTTCCTGCCATATTTTGAAGAAGTC
TGGGCATACTCTAAGACCATGGAGTTCTGGCAAGAGGATAGTGACGAAGA
TGTGAATTTCTCAAGCGAGGAATCATTCAAGTTCTCAAAACCTGACGTCA
AATTCCGTGATCAAGAGTTGCAAGTTATTACAAAGATTGTGGATTATACT
TTACAACCTGGTCAAAGTTATGAAGGTGTTTGGCATGCTGAAGGAATGTC
ACATGAGAATATTGTCATGACAGgtctttattttattgatCGTGATGCTG
ACTTAACTGGTGGAGATCTTCGATTCAAAAGAGCATTCCATATAGATGAA
AGGGCTCAAGTTTTCTGGAACGTCCCTCAGGAACGACCAGTAGTTGTAAA
CCAATTCGCTTCAGAGGCTTACATCCCACTTGGGCATTTCCCAACGAAAG
AGGGCTATATTATGATCTTCCCAAATTGTcatattcacaaaattgctAAG
TTTGTCAACGAGTCAAAAACAAAAGCTGCTTCACGTCGTAtcgttgtttt
cttttttgtcaatcctgagaaaaagATCATTTCCACAAGAGAAGTTGCAC
CTCAGCAAGGAGTGATCAGAGCTCGATCAGCGAAAAAATTTCGTTTGGAT
TTGATGACTGAACGGAAGTATAACAAAGATAAACTTAACGTTCGCGAGTT
AGAACTTTGTGAACATTGATATGCTATAAGAAACTTTCGTGAACTTTTGA
GATACCTTAAATGATCTTGGCGTGTTAAGGATATAGTAATATTTCATACT
AATTAAATAAATTACGTCAAAAAGTTTCCtttcttattgatatttttgaa
ccTTCGTAGCCGCTTCAACCTGTTGTGGAAAgatattattttgttatttt
tttcttagaccaacaaatattgtttttgaTATAATACCATGCATAAATAC
TTTTGGAACATTTGAATATGACtttttttaaccctattcgaactaggggg
ggggggctctttctgttcggaagtcaatctattggtaatagctcctgaaa
taatagagcttttgccgtgaaattttctgtaaattcctaacttttat Run BLAST on NCBI protein sequence of TCONS_00029264-protein >TCONS_00029264-protein ID=TCONS_00029264-protein|Name=TCONS_00029264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp
MSSNLKLEKTKFPTADYLESILSKVGDWDCLQYLAGDKIVFEDIEPKGFE
IVETSIPNNQPKQEDEDCEEDEEEDDDDDDDDPDAISATMKLRVAVKTKE
EKIKEMFSEAGITVKKYKIISSDSSHHDIEASISFDYCSTEVIESSFLDM
FWKTRMNAVITEGVCYSNSKVPDNLRDSLRNNIDKLANETEIDFHPNSND
VVRDLVHPALYSYIKGVSKLKKLPDVDPPTSKKSKEESEKDFWGRPYEDS
KFQWLPTPFHVSEDGKCSIKEYINNLDKDKFPEMYDDLEKLFEVFLPYFE
EVWAYSKTMEFWQEDSDEDVNFSSEESFKFSKPDVKFRDQELQVITKIVD
YTLQPGQSYEGVWHAEGMSHENIVMTGLYFIDRDADLTGGDLRFKRAFHI
DERAQVFWNVPQERPVVVNQFASEAYIPLGHFPTKEGYIMIFPNCHIHKI
AKFVNESKTKAASRRIVVFFFVNPEKKIISTREVAPQQGVIRARSAKKFR
LDLMTERKYNKDKLNVRELELCEH Run BLAST on NCBI transcript from alignment at sc0000735:3249..5373- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029264 ID=TCONS_00029264|Name=TCONS_00029264|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at sc0000735:3249..5373- (Clytia hemisphaerica)
ATTTTAGCAAGACAAGTTTATAAAGATTAAAAAACAAATAAAAAATGAGT
TCCAATTTGAAGCTAGAAAAGACCAAGTTCCCAACAGCCGATTATTTGGA
AAGCATCTTATCAAAAGTTGGAGATTGGGATTGTCTTCAATATCTGGCAG
GTGACAAGATTGTATTTGAGGATATTGAACCAAAAGGTTTTGAGATTGTG
GAGACGTCGATTCCGAATAATCAACCGAAGCAGGAAGATGAGGACTGCGA
AGAAGATGAAGAAGAAGATGATGATGATGATGATGATGATCCCGATGCAA
TTAGTGCTACGATGAAACTACGTGTTGCTGTTAAAACCAAGGAAGAAAAA
ATTAAAGAAATGTTTAGTGAAGCAGGGATCACTGTTAAGAAGTATAAGAT
TATTTCCAGTGATTCTTCCCATCACGATATCGAAGCTTCTATATCGTTTG
ATTACTGTAGTACTGAAGTGATCGAATCTTCATTCCTTGATATGTTTTGG
AAGACAAGGATGAATGCAGTTATCACTGAAGGAGTTTGCTATTCAAACTC
CAAAGTTCCTGATAATTTACGCGATTCATTGAGAAATAATATTGATAAAC
TTGCAAACGAAACTGAAATTGATTTTCATCCAAATTCGAATGATGTTGTT
AGAGATTTGGTGCATCCTGCTTTGTATTCTTATATTAAGGGTGTTTCAAA
GTTGAAGAAATTACCTGATGTAGATCCTCCAACATCCAAGAAGTCTAAAG
AAGAGTCAGAAAAAGATTTCTGGGGACGACCTTACGAAGATTCAAAATTC
CAATGGCTTCCAACACCATTCCATGTTTCCGAAGATGGCAAATGCTCAAT
TAAAGAGTATATCAACAACCTTGATAAGGATAAGTTTCCAGAGATGTATG
ATGACCTAGAAAAATTGTTTGAGGTTTTCCTGCCATATTTTGAAGAAGTC
TGGGCATACTCTAAGACCATGGAGTTCTGGCAAGAGGATAGTGACGAAGA
TGTGAATTTCTCAAGCGAGGAATCATTCAAGTTCTCAAAACCTGACGTCA
AATTCCGTGATCAAGAGTTGCAAGTTATTACAAAGATTGTGGATTATACT
TTACAACCTGGTCAAAGTTATGAAGGTGTTTGGCATGCTGAAGGAATGTC
ACATGAGAATATTGTCATGACAGGTAACAAATGATTTCGATCTGGTTACA
ACGTTAAAGTTTTAATTGCCCCATTCTCCTGCATTTGACAGAAAATATTT
TTTTAAAAGGTTTACTTTTACTTTGATATCATTCTCAATCTGTCATTTCA
GGTCTTTATTTTATTGATCGTGATGCTGACTTAACTGGTGGAGATCTTCG
ATTCAAAAGAGCATTCCATATAGATGAAAGGGCTCAAGTTTTCTGGAACG
TCCCTCAGGAACGACCAGTAGTTGTAAACCAATTCGCTTCAGAGGCTTAC
ATCCCACTTGGGCATTTCCCAACGAAAGAGGGCTATATTATGATCTTCCC
AAATTGTCATATTCACAAAATTGCTAAGTTTGTCAACGAGTCAAAAACAA
AAGCTGCTTCACGTCGTATCGTTGTTTTCTTTTTTGTCAATCCTGAGAAA
AAGATCATTTCCACAAGAGAAGTTGCACCTCAGCAAGGAGTGATCAGAGC
TCGATCAGCGAAAAAATTTCGTTTGGATTTGATGACTGAACGGAAGTATA
ACAAAGATAAACTTAACGTTCGCGAGTTAGAACTTTGTGAACATTGATAT
GCTATAAGAAACTTTCGTGAACTTTTGAGATACCTTAAATGATCTTGGCG
TGTTAAGGATATAGTAATATTTCATACTAATTAAATAAATTACGTCAAAA
AGTTTCCTTTCTTATTGATATTTTTGAACCTTCGTAGCCGCTTCAACCTG
TTGTGGAAAGATATTATTTTGTTATTTTTTTCTTAGACCAACAAATATTG
TTTTTGATATAATACCATGCATAAATACTTTTGGAACATTTGAATATGAC
TTTTTTTAACCCTATTCGAACTAGGGGGGGGGGGCTCTTTCTGTTCGGAA
GTCAATCTATTGGTAATAGCTCCTGAAATAATAGAGCTTTTGCCGTGAAA
TTTTCTGTAAATTCCTAACTTTTAT Coding sequence (CDS) from alignment at sc0000735:3249..5373- >TCONS_00029264 ID=TCONS_00029264|Name=TCONS_00029264|organism=Clytia hemisphaerica|type=CDS|length=3150bp|location=Sequence derived from alignment at sc0000735:3249..5373- (Clytia hemisphaerica)
GTCTTTATTTTATTGATCGTGATGCTGACTTAACTGGTGGAGATCTTCGA
TTCAAAAGAGCATTCCATATAGATGAAAGGGCTCAAGTTTTCTGGAACGT
CCCTCAGGAACGACCAGTAGTTGTAAACCAATTCGCTTCAGAGGCTTACA
TCCCACTTGGGCATTTCCCAACGAAAGAGGGCTATATTATGATCTTCCCA
AATTGTCATATTCACAAAATTGCTAAGTTTGTCAACGAGTCAAAAACAAA
AGCTGCTTCACGTCGTATCGTTGTTTTCTTTTTTGTCAATCCTGAGAAAA
AGATCATTTCCACAAGAGAAGTTGCACCTCAGCAAGGAGTGATCAGAGCT
CGATCAGCGAAAAAATTTCGTTTGGATTTGATGACTGAACGGAAGTATAA
CAAAGATAAACTTAACGTTCGCGAGTTAGAACTTTGTGAACATTGAATGA
GTTCCAATTTGAAGCTAGAAAAGACCAAGTTCCCAACAGCCGATTATTTG
GAAAGCATCTTATCAAAAGTTGGAGATTGGGATTGTCTTCAATATCTGGC
AGGTGACAAGATTGTATTTGAGGATATTGAACCAAAAGGTTTTGAGATTG
TGGAGACGTCGATTCCGAATAATCAACCGAAGCAGGAAGATGAGGACTGC
GAAGAAGATGAAGAAGAAGATGATGATGATGATGATGATGATCCCGATGC
AATTAGTGCTACGATGAAACTACGTGTTGCTGTTAAAACCAAGGAAGAAA
AAATTAAAGAAATGTTTAGTGAAGCAGGGATCACTGTTAAGAAGTATAAG
ATTATTTCCAGTGATTCTTCCCATCACGATATCGAAGCTTCTATATCGTT
TGATTACTGTAGTACTGAAGTGATCGAATCTTCATTCCTTGATATGTTTT
GGAAGACAAGGATGAATGCAGTTATCACTGAAGGAGTTTGCTATTCAAAC
TCCAAAGTTCCTGATAATTTACGCGATTCATTGAGAAATAATATTGATAA
ACTTGCAAACGAAACTGAAATTGATTTTCATCCAAATTCGAATGATGTTG
TTAGAGATTTGGTGCATCCTGCTTTGTATTCTTATATTAAGGGTGTTTCA
AAGTTGAAGAAATTACCTGATGTAGATCCTCCAACATCCAAGAAGTCTAA
AGAAGAGTCAGAAAAAGATTTCTGGGGACGACCTTACGAAGATTCAAAAT
TCCAATGGCTTCCAACACCATTCCATGTTTCCGAAGATGGCAAATGCTCA
ATTAAAGAGTATATCAACAACCTTGATAAGGATAAGTTTCCAGAGATGTA
TGATGACCTAGAAAAATTGTTTGAGGTTTTCCTGCCATATTTTGAAGAAG
TCTGGGCATACTCTAAGACCATGGAGTTCTGGCAAGAGGATAGTGACGAA
GATGTGAATTTCTCAAGCGAGGAATCATTCAAGTTCTCAAAACCTGACGT
CAAATTCCGTGATCAAGAGTTGCAAGTTATTACAAAGATTGTGGATTATA
CTTTACAACCTGGTCAAAGTTATGAAGGTGTTTGGCATGCTGAAGGAATG
TCACATGAGAATATTGTCATGACAGGTCTTTATTTTATTGATCGTGATGC
TGACTTAACTGGTGGAGATCTTCGATTCAAAAGAGCATTCCATATAGATG
AAAGGGCTCAAGTTTTCTGGAACGTCCCTCAGGAACGACCAGTAGTTGTA
AACCAATTCGCTTCAGAGGCTTACATCCCACTTGGGCATTTCCCAACGAA
AGAGGGCTATATTATGATCTTCCCAAATTGTCATATTCACAAAATTGCTA
AGTTTGTCAACGAGTCAAAAACAAAAGCTGCTTCACGTCGTATCGTTGTT
TTCTTTTTTGTCAATCCTGAGAAAAAGATCATTTCCACAAGAGAAGTTGC
ACCTCAGCAAGGAGTGATCAGAGCTCGATCAGCGAAAAAATTTCGTTTGG
ATTTGATGACTGAACGGAAGTATAACAAAGATAAACTTAACGTTCGCGAG
TTAGAACTTTGTGAACATTGAATGAGTTCCAATTTGAAGCTAGAAAAGAC
CAAGTTCCCAACAGCCGATTATTTGGAAAGCATCTTATCAAAAGTTGGAG
ATTGGGATTGTCTTCAATATCTGGCAGGTGACAAGATTGTATTTGAGGAT
ATTGAACCAAAAGGTTTTGAGATTGTGGAGACGTCGATTCCGAATAATCA
ACCGAAGCAGGAAGATGAGGACTGCGAAGAAGATGAAGAAGAAGATGATG
ATGATGATGATGATGATCCCGATGCAATTAGTGCTACGATGAAACTACGT
GTTGCTGTTAAAACCAAGGAAGAAAAAATTAAAGAAATGTTTAGTGAAGC
AGGGATCACTGTTAAGAAGTATAAGATTATTTCCAGTGATTCTTCCCATC
ACGATATCGAAGCTTCTATATCGTTTGATTACTGTAGTACTGAAGTGATC
GAATCTTCATTCCTTGATATGTTTTGGAAGACAAGGATGAATGCAGTTAT
CACTGAAGGAGTTTGCTATTCAAACTCCAAAGTTCCTGATAATTTACGCG
ATTCATTGAGAAATAATATTGATAAACTTGCAAACGAAACTGAAATTGAT
TTTCATCCAAATTCGAATGATGTTGTTAGAGATTTGGTGCATCCTGCTTT
GTATTCTTATATTAAGGGTGTTTCAAAGTTGAAGAAATTACCTGATGTAG
ATCCTCCAACATCCAAGAAGTCTAAAGAAGAGTCAGAAAAAGATTTCTGG
GGACGACCTTACGAAGATTCAAAATTCCAATGGCTTCCAACACCATTCCA
TGTTTCCGAAGATGGCAAATGCTCAATTAAAGAGTATATCAACAACCTTG
ATAAGGATAAGTTTCCAGAGATGTATGATGACCTAGAAAAATTGTTTGAG
GTTTTCCTGCCATATTTTGAAGAAGTCTGGGCATACTCTAAGACCATGGA
GTTCTGGCAAGAGGATAGTGACGAAGATGTGAATTTCTCAAGCGAGGAAT
CATTCAAGTTCTCAAAACCTGACGTCAAATTCCGTGATCAAGAGTTGCAA
GTTATTACAAAGATTGTGGATTATACTTTACAACCTGGTCAAAGTTATGA
AGGTGTTTGGCATGCTGAAGGAATGTCACATGAGAATATTGTCATGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029264-exon-sc0000735-1575043694:4201..5373 | TCONS_00029264-exon-sc0000735-1575043694:4201..5373 | Clytia hemisphaerica | exon |
| TCONS_00029264-exon-sc0000735-1575043694:3249..4072 | TCONS_00029264-exon-sc0000735-1575043694:3249..4072 | Clytia hemisphaerica | exon |
| TCONS_00029264-exon-sc0000735-1510915933:4201..5373 | TCONS_00029264-exon-sc0000735-1510915933:4201..5373 | Clytia hemisphaerica | exon |
| TCONS_00029264-exon-sc0000735-1510915933:3249..4072 | TCONS_00029264-exon-sc0000735-1510915933:3249..4072 | Clytia hemisphaerica | exon |
| TCONS_00029264-exon-sc0000735-1491911889:4201..5373 | TCONS_00029264-exon-sc0000735-1491911889:4201..5373 | Clytia hemisphaerica | exon |
| TCONS_00029264-exon-sc0000735-1491911889:3249..4072 | TCONS_00029264-exon-sc0000735-1491911889:3249..4072 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000735 | supercontig | sc0000735:3249..5373 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025340 | DUF4246 |
Blast
The following BLAST results are available for this feature:
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