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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029289 ID=TCONS_00029289|Name=TCONS_00029289|organism=Clytia hemisphaerica|type=transcript|length=1575bp
CGAACTTGCATGCAAAATGGAGGAGATTTACCGTAATTGTTGCAATTTCG
TTTTTCCTTTCAAGGCCCTTTAGCAATGAGTACTTAATGCATAGTTACAA
TCCATTGTAAAAGAAACTCAACATAGAATTtccaaaaaagtaaaacatCT
ACTTCCAcccttaaaaacaaaacacattTCCGATTACCTTGAAGAGATGA
AAAGACCCAACACTACGTAGGATTCATTGACACAGAGAGTTTgctatcat
catcatcatcgtttttaacacccccttctcaaagaACCACTAGGGACCct
tcccactagaaaaattggctaaaatattgtcccagtgaaaaattatactc
taatttttgtcccccgCTGATAATAACCAGATAAGTAAATCctccactgc
aaaatattgtgctaccTTTAGtggttaacttgaaaaattaaatttggcag
gaatttaattaaGGCAGATGgaggacatttttgtccaaaaaacgccatta
aaaaaggaaaaaacctgtttttaaagcctaaaatagcacacatttggggg
aataaatagataaatttaaatttggtggggatttaatttggcggatgacc
gaaaaaattaaatttggcgggaacttaatttgtaAGTTCCCGCAGAAATT
TCTTCCATTAAGGTATTCTTtccattcccactgaattttcttgaTAGAAA
ACAATGCAATGGAATTCCAATCCCCAGCCAGTCAAAAATATCCCTAAGCA
TAACTGAGCTTGTTTCCCAAaaaacatatgcttataaaaaaacatgtatt
cacATAAGAGAAGGATGTCATTTGAACaatgtttgattttgttttggcTC
AATGGATGGTCTTAGAAACGTTGTAGAAGATTGAGTGGATGTATTTGCCA
TGGGGTTTGAATTGGTTGCTGAACTGTTCTTACAGCCAGGTTGTTAGTTA
TCATTGCCATTATTTCTGTccaaaattgtcattttctttgtttgttgTAT
TTTCAGAAGATAATTTTGCATCATTCTGCGTATCTCGTTGGCGTTTCATC
TTCAAAAAGTCATTTCTTCCTATTCCCTCAAgggttttgtttgtttgtcg
aCTGAAAAGCTCATTAGGAGTGGATGGAATTGGTGAGAGGGTACGCCTTG
TGGAGTGTTTAGGGTCTAATTATTAGTCTGTTTTTCTTTAGATTCAGCAG
CCTCTGTTATTTGAGTTATAGTTATAGATAGTTAGGATTTCTGTTTCATC
ATTTGCAACATGAGGGAAATTGATGGTTTCATCTGGGCAAGACGGACAAA
GATAGTAAAAGCCAGGGATTTTGTAGATAAGGTGATGCAATTTCCCTTTT
TCGTTCACAAGGTTCATACTAGTTAAAAGATCAAGATAGCACAGTCGATG
CACTTCTTGACCACATGCCCCACAACTTATGAGTAGTCTATCATTGAGTT
TGAAGGAATAGGATTCTTTAATCTGGCATACGTCTTGGAAGAAATTCTTG
ATTTCCAAGCATAAAAGGTGAATTGCATCATCTTTTGTCACATTGTTCaa
agtgtgcaagggggttccagctCCC Run BLAST on NCBI protein sequence of TCONS_00029289-protein >TCONS_00029289-protein ID=TCONS_00029289-protein|Name=TCONS_00029289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
GAGTPLHTLNNVTKDDAIHLLCLEIKNFFQDVCQIKESYSFKLNDRLLIS
CGACGQEVHRLCYLDLLTSMNLVNEKGKLHHLIYKIPGFYYLCPSCPDET
INFPHVANDETEILTIYNYNSNNRGC Run BLAST on NCBI transcript from alignment at sc0000735:97115..98689 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029289 ID=TCONS_00029289|Name=TCONS_00029289|organism=Clytia hemisphaerica|type=transcript|length=1575bp|location=Sequence derived from alignment at sc0000735:97115..98689 (Clytia hemisphaerica)
GGGagctggaacccccttgcacactttGAACAATGTGACAAAAGATGATG
CAATTCACCTTTTATGCTTGGAAATCAAGAATTTCTTCCAAGACGTATGC
CAGATTAAAGAATCCTATTCCTTCAAACTCAATGATAGACTACTCATAAG
TTGTGGGGCATGTGGTCAAGAAGTGCATCGACTGTGCTATCTTGATCTTT
TAACTAGTATGAACCTTGTGAACGAAAAAGGGAAATTGCATCACCTTATC
TACAAAATCCCTGGCTTTTACTATCTTTGTCCGTCTTGCCCAGATGAAAC
CATCAATTTCCCTCATGTTGCAAATGATGAAACAGAAATCCTAACTATCT
ATAACTATAACTCAAATAACAGAGGCTGCTGAATCTAAAGAAAAACAGAC
TAATAATTAGACCCTAAACACTCCACAAGGCGTACCCTCTCACCAATTCC
ATCCACTCCTAATGAGCTTTTCAGtcgacaaacaaacaaaacccTTGAGG
GAATAGGAAGAAATGACTTTTTGAAGATGAAACGCCAACGAGATACGCAG
AATGATGCAAAATTATCTTCTGAAAATAcaacaaacaaagaaaatgacaa
ttttggACAGAAATAATGGCAATGATAACTAACAACCTGGCTGTAAGAAC
AGTTCAGCAACCAATTCAAACCCCATGGCAAATACATCCACTCAATCTTC
TACAACGTTTCTAAGACCATCCATTGAgccaaaacaaaatcaaacattGT
TCAAATGACATCCTTCTCTTATgtgaatacatgtttttttataagcatat
gttttTTGGGAAACAAGCTCAGTTATGCTTAGGGATATTTTTGACTGGCT
GGGGATTGGAATTCCATTGCATTGTTTTCTAtcaagaaaattcagtggga
atggaAAGAATACCTTAATGGAAGAAATTTCTGCGGGAACTtacaaatta
agttcccgccaaatttaattttttcggtcatccgccaaattaaatcccca
ccaaatttaaatttatctatttattcccccaaatgtgtgctattttaggc
tttaaaaacaggttttttccttttttaatggcgttttttggacaaaaatg
tcctcCATCTGCCttaattaaattcctgccaaatttaatttttcaagtta
accaCTAAAggtagcacaatattttgcagtggagGATTTACTTATCTGGT
TATTATCAGcgggggacaaaaattagagtataatttttcactgggacaat
attttagccaatttttctagtgggaagGGTCCCTAGTGGTtctttgagaa
gggggtgttaaaaacgatgatgatgatgatagcAAACTCTCTGTGTCAAT
GAATCCTACGTAGTGTTGGGTCTTTTCATCTCTTCAAGGTAATCGGAaat
gtgttttgtttttaagggTGGAAGTAGatgttttacttttttggaAATTC
TATGTTGAGTTTCTTTTACAATGGATTGTAACTATGCATTAAGTACTCAT
TGCTAAAGGGCCTTGAAAGGAAAAACGAAATTGCAACAATTACGGTAAAT
CTCCTCCATTTTGCATGCAAGTTCG Coding sequence (CDS) from alignment at sc0000735:97115..98689 >TCONS_00029289 ID=TCONS_00029289|Name=TCONS_00029289|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000735:97115..98689 (Clytia hemisphaerica)
GGagctggaacccccttgcacactttGAACAATGTGACAAAAGATGATGC
AATTCACCTTTTATGCTTGGAAATCAAGAATTTCTTCCAAGACGTATGCC
AGATTAAAGAATCCTATTCCTTCAAACTCAATGATAGACTACTCATAAGT
TGTGGGGCATGTGGTCAAGAAGTGCATCGACTGTGCTATCTTGATCTTTT
AACTAGTATGAACCTTGTGAACGAAAAAGGGAAATTGCATCACCTTATCT
ACAAAATCCCTGGCTTTTACTATCTTTGTCCGTCTTGCCCAGATGAAACC
ATCAATTTCCCTCATGTTGCAAATGATGAAACAGAAATCCTAACTATCTA
TAACTATAACTCAAATAACAGAGGCTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029289-exon-sc0000735-1491911889:97115..98689 | TCONS_00029289-exon-sc0000735-1491911889:97115..98689 | Clytia hemisphaerica | exon |
| TCONS_00029289-exon-sc0000735-1510915933:97115..98689 | TCONS_00029289-exon-sc0000735-1510915933:97115..98689 | Clytia hemisphaerica | exon |
| TCONS_00029289-exon-sc0000735-1575043694:97115..98689 | TCONS_00029289-exon-sc0000735-1575043694:97115..98689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000735 | supercontig | sc0000735:97115..98689 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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