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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029290 ID=TCONS_00029290|Name=TCONS_00029290|organism=Clytia hemisphaerica|type=transcript|length=2175bp
GACCACTGGTTGTACTGGTGCTCCACACTTGTGAAGATGGTTAATTAATA
AAGTTATCAGTCACTTTACCACGATATTCCACGAAGAACTTTACCTTAGC
TTGCTTTTGTTCTGGCTCCTGGTTTGATGTTAACAATTGctcgttttctt
ttgaaatgattttctcGATGGTTGAAGAAATGATTGGGTCATAAAATTCT
GGTGGATACTGGTTCTTCTCTAACATCGACTTAGCCCTTTGAAGGCTTTC
ATGAAAGTGGCGCCAGTGACTGCAAGCTCTGTATATTCTGTGGACAATAC
CAGATACTACATTCCGTTTGTATCGTTTCGGTGACAACGCGTGGAAGTTC
ATCATAAGCCCGGTATCTGTCGGTTTGCAGTACCATGTTGACTCAAGGGA
GTTTCCTTTGTGTATGATACATACGTTTAGGAAAGGTAGCTTACCATCAT
CTTCAATCTCCAACGTGAATTTCAAATTCTTGTGGACTTTCTCATCGTCG
TAAACGTCAATCAACTTTTGATCAATGTGTTGTCGTTTAATTGATCTTAG
AATATCGTCCATGTAGCGCTCGAAAATTTTCGCGTCATCTTTGATAAATT
CTTCATATTGGCCAGACAAGGGGCTGGTTGGGAACCCATGGCTAAGCCAC
TTGTTTGCACGGTCCATCATGAGTTAGCAACATAACGTCAGTTGTCGCAA
GTTTGGTTAGTGTGATAAATGTTTCTTCGTCAACGGGTACGTTGGTGTAC
AGCGATTTCACATCAAACGAGATCATGCTTCGTCCTCATCTAACTCGATA
TCCTTTAGCTGATCAACCGTTTTCTTTGCTGAACTATTAATTTTCGATTG
TGGTACGACTGACAACCATTCTGTTATTCTTTTGGCGATGTTGTAGTAGG
GTGAAGATGGCATTGATAAGACTGGTCTCATCGGTACATTTTGTTTGTGG
ACCTTCGCTGTGCTGTATAATCGGGGTAGTTGTCATCGATTTTACTGTTT
TTATTCAAGGTAATTAGTTCTGAATTTATCCTTTCTTCCTCTTTTAGCAC
CACTTCCCTTACATTCTTACGTGTTGGAGTTTCTTTTACGAATTGACTTA
AGTTTAGAATGTCATTCATTTTTTCCTGGTATGTGTTCTCTTTCATCACA
CAAATCCCTGTGCCTTTATCGAATGGAACTGCGAGTAAGGCGTTTTCTTT
CAGGAAACGGTTAGTCATTTTCACGTGTCTAGGgatcttttgttttgaac
agTTTTTTACGTATTTTAGGGTGGCGATGTTTATGTCGTTGATTGTTTCA
TTTGTCACGTCTGGGTTTTGGAGATTATTGAGTAATAAGTCCATCTCGGC
AAGGAAGCCTTTCGAGTCAAATTTCGTCAAAACAGAGTTCTTTGGCCCCA
TTGAAAGTGTATCAAGTACGTATTTCGGTACAGGAACCTCGACGTCTAGT
AGTCTAACGGTATTGTGGAGCTGAAATAGCGGCCGATTTTGTTCTTTTGA
TAAATTATCCAGCTTTTTCGATTGTGTTGACATTACTTCATTCCACTCCA
TTCTAACTTTCAATCTCGAATGGACTATTATCGATGGTAGATACCTCCTG
TGGACACTAAATTTAAGAGCGTCTCGTATGTCTTTTACGGTTGCGTCGTG
GACTGCTCGTGCTTTTTTGGCTTNTACTTCATTCCTCTCCATTCTAACTT
TCAATCTCGAATGGACTATTATCGATGGTAGATACCTCCTGTGGACACTA
AATTTAAGAGCGTCTCGTATGTCTTTTACGGTTGCGTCGTGGACTGCTCG
TGCTTTTTTGGCTTTGTTGCATTCTTCTTTCAGTAAACGTTTCTGAAAAT
TATGGACGATCGTTGGTTCAAAACACCCATTTGTGGGTacacgaaatttc
aaaaaacgtgGCACTATATCAGCTTGCAAACAACTGTTCAGAAAGTTAAT
TCGACAAATATTTCTCATTCTCTTCAAAAGTGCTCTTTCATattccaaaa
acattttccattgTTCCTCCTTTTTAAGGTATTTTGCCAAGAGGCGATAC
GATAAAAACATTGCGTTGTTAATTTACAGATAAATGTTTGAACTGCAATG
GTTCATAAggtaaaatcacaaaatatatTTCGAACATTCACGTCCATTAT
CAGTTAAAAGTAAGCTACAAGCAAA Run BLAST on NCBI protein sequence of TCONS_00029290-protein >TCONS_00029290-protein ID=TCONS_00029290-protein|Name=TCONS_00029290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MFLSYRLLAKYLKKEEQWKMFLEYERALLKRMRNICRINFLNSCLQADIV
PRFLKFRVPTNGCFEPTIVHNFQKRLLKEECNKAKKARAVHDATVKDIRD
ALKFSVHRRYLPSIIVHSRLKVRMERNEVXAKKARAVHDATVKDIRDALK
FSVHRRYLPSIIVHSRLKVRMEWNEVMSTQSKKLDNLSKEQNRPLFQLHN
TVRLLDVEVPVPKYVLDTLSMGPKNSVLTKFDSKGFLAEMDLLLNNLQNP
DVTNETINDINIATLKYVKNCSKQKIPRHVKMTNRFLKENALLAVPFDKG
TGICVMKENTYQEKMNDILNLSQFVKETPTRKNVREVVLKEEERINSELI
TLNKNSKIDDNYPDYTAQRRSTNKMYR Run BLAST on NCBI transcript from alignment at sc0000735:99326..101500 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029290 ID=TCONS_00029290|Name=TCONS_00029290|organism=Clytia hemisphaerica|type=transcript|length=2175bp|location=Sequence derived from alignment at sc0000735:99326..101500 (Clytia hemisphaerica)
TTTGCTTGTAGCTTACTTTTAACTGATAATGGACGTGAATGTTCGAAata
tattttgtgattttaccTTATGAACCATTGCAGTTCAAACATTTATCTGT
AAATTAACAACGCAATGTTTTTATCGTATCGCCTCTTGGCAAAATACCTT
AAAAAGGAGGAAcaatggaaaatgtttttggaatATGAAAGAGCACTTTT
GAAGAGAATGAGAAATATTTGTCGAATTAACTTTCTGAACAGTTGTTTGC
AAGCTGATATAGTGCcacgttttttgaaatttcgtgtACCCACAAATGGG
TGTTTTGAACCAACGATCGTCCATAATTTTCAGAAACGTTTACTGAAAGA
AGAATGCAACAAAGCCAAAAAAGCACGAGCAGTCCACGACGCAACCGTAA
AAGACATACGAGACGCTCTTAAATTTAGTGTCCACAGGAGGTATCTACCA
TCGATAATAGTCCATTCGAGATTGAAAGTTAGAATGGAGAGGAATGAAGT
ANAAGCCAAAAAAGCACGAGCAGTCCACGACGCAACCGTAAAAGACATAC
GAGACGCTCTTAAATTTAGTGTCCACAGGAGGTATCTACCATCGATAATA
GTCCATTCGAGATTGAAAGTTAGAATGGAGTGGAATGAAGTAATGTCAAC
ACAATCGAAAAAGCTGGATAATTTATCAAAAGAACAAAATCGGCCGCTAT
TTCAGCTCCACAATACCGTTAGACTACTAGACGTCGAGGTTCCTGTACCG
AAATACGTACTTGATACACTTTCAATGGGGCCAAAGAACTCTGTTTTGAC
GAAATTTGACTCGAAAGGCTTCCTTGCCGAGATGGACTTATTACTCAATA
ATCTCCAAAACCCAGACGTGACAAATGAAACAATCAACGACATAAACATC
GCCACCCTAAAATACGTAAAAAActgttcaaaacaaaagatcCCTAGACA
CGTGAAAATGACTAACCGTTTCCTGAAAGAAAACGCCTTACTCGCAGTTC
CATTCGATAAAGGCACAGGGATTTGTGTGATGAAAGAGAACACATACCAG
GAAAAAATGAATGACATTCTAAACTTAAGTCAATTCGTAAAAGAAACTCC
AACACGTAAGAATGTAAGGGAAGTGGTGCTAAAAGAGGAAGAAAGGATAA
ATTCAGAACTAATTACCTTGAATAAAAACAGTAAAATCGATGACAACTAC
CCCGATTATACAGCACAGCGAAGGTCCACAAACAAAATGTACCGATGAGA
CCAGTCTTATCAATGCCATCTTCACCCTACTACAACATCGCCAAAAGAAT
AACAGAATGGTTGTCAGTCGTACCACAATCGAAAATTAATAGTTCAGCAA
AGAAAACGGTTGATCAGCTAAAGGATATCGAGTTAGATGAGGACGAAGCA
TGATCTCGTTTGATGTGAAATCGCTGTACACCAACGTACCCGTTGACGAA
GAAACATTTATCACACTAACCAAACTTGCGACAACTGACGTTATGTTGCT
AACTCATGATGGACCGTGCAAACAAGTGGCTTAGCCATGGGTTCCCAACC
AGCCCCTTGTCTGGCCAATATGAAGAATTTATCAAAGATGACGCGAAAAT
TTTCGAGCGCTACATGGACGATATTCTAAGATCAATTAAACGACAACACA
TTGATCAAAAGTTGATTGACGTTTACGACGATGAGAAAGTCCACAAGAAT
TTGAAATTCACGTTGGAGATTGAAGATGATGGTAAGCTACCTTTCCTAAA
CGTATGTATCATACACAAAGGAAACTCCCTTGAGTCAACATGGTACTGCA
AACCGACAGATACCGGGCTTATGATGAACTTCCACGCGTTGTCACCGAAA
CGATACAAACGGAATGTAGTATCTGGTATTGTCCACAGAATATACAGAGC
TTGCAGTCACTGGCGCCACTTTCATGAAAGCCTTCAAAGGGCTAAGTCGA
TGTTAGAGAAGAACCAGTATCCACCAGAATTTTATGACCCAATCATTTCT
TCAACCATCgagaaaatcatttcaaaagaaaacgagCAATTGTTAACATC
AAACCAGGAGCCAGAACAAAAGCAAGCTAAGGTAAAGTTCTTCGTGGAAT
ATCGTGGTAAAGTGACTGATAACTTTATTAATTAACCATCTTCACAAGTG
TGGAGCACCAGTACAACCAGTGGTC Coding sequence (CDS) from alignment at sc0000735:99326..101500 >TCONS_00029290 ID=TCONS_00029290|Name=TCONS_00029290|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000735:99326..101500 (Clytia hemisphaerica)
ATGTTTTTATCGTATCGCCTCTTGGCAAAATACCTTAAAAAGGAGGAAca
atggaaaatgtttttggaatATGAAAGAGCACTTTTGAAGAGAATGAGAA
ATATTTGTCGAATTAACTTTCTGAACAGTTGTTTGCAAGCTGATATAGTG
CcacgttttttgaaatttcgtgtACCCACAAATGGGTGTTTTGAACCAAC
GATCGTCCATAATTTTCAGAAACGTTTACTGAAAGAAGAATGCAACAAAG
CCAAAAAAGCACGAGCAGTCCACGACGCAACCGTAAAAGACATACGAGAC
GCTCTTAAATTTAGTGTCCACAGGAGGTATCTACCATCGATAATAGTCCA
TTCGAGATTGAAAGTTAGAATGGAGAGGAATGAAGTANAAGCCAAAAAAG
CACGAGCAGTCCACGACGCAACCGTAAAAGACATACGAGACGCTCTTAAA
TTTAGTGTCCACAGGAGGTATCTACCATCGATAATAGTCCATTCGAGATT
GAAAGTTAGAATGGAGTGGAATGAAGTAATGTCAACACAATCGAAAAAGC
TGGATAATTTATCAAAAGAACAAAATCGGCCGCTATTTCAGCTCCACAAT
ACCGTTAGACTACTAGACGTCGAGGTTCCTGTACCGAAATACGTACTTGA
TACACTTTCAATGGGGCCAAAGAACTCTGTTTTGACGAAATTTGACTCGA
AAGGCTTCCTTGCCGAGATGGACTTATTACTCAATAATCTCCAAAACCCA
GACGTGACAAATGAAACAATCAACGACATAAACATCGCCACCCTAAAATA
CGTAAAAAActgttcaaaacaaaagatcCCTAGACACGTGAAAATGACTA
ACCGTTTCCTGAAAGAAAACGCCTTACTCGCAGTTCCATTCGATAAAGGC
ACAGGGATTTGTGTGATGAAAGAGAACACATACCAGGAAAAAATGAATGA
CATTCTAAACTTAAGTCAATTCGTAAAAGAAACTCCAACACGTAAGAATG
TAAGGGAAGTGGTGCTAAAAGAGGAAGAAAGGATAAATTCAGAACTAATT
ACCTTGAATAAAAACAGTAAAATCGATGACAACTACCCCGATTATACAGC
ACAGCGAAGGTCCACAAACAAAATGTACCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00029290-exon-sc0000735-1491911889:99326..101500 | TCONS_00029290-exon-sc0000735-1491911889:99326..101500 | Clytia hemisphaerica | exon |
| TCONS_00029290-exon-sc0000735-1510915933:99326..101500 | TCONS_00029290-exon-sc0000735-1510915933:99326..101500 | Clytia hemisphaerica | exon |
| TCONS_00029290-exon-sc0000735-1575043694:99326..101500 | TCONS_00029290-exon-sc0000735-1575043694:99326..101500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000735 | supercontig | sc0000735:99326..101500 . |
Blast
The following BLAST results are available for this feature:
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