TCONS_00029294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029294
Unique NameTCONS_00029294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029294 ID=TCONS_00029294|Name=TCONS_00029294|organism=Clytia hemisphaerica|type=transcript|length=898bp
NNTCGTAAATCAATGCTACGATTCCCATACCGAAATAAACCCAATCGGGA
TTATCGGTCGTTTGATTGTCTACGGTTGTGTCGCAACCATCGCGAGCCAT
GTATAGTTTGGATAAACACGGAGCAACAATGACATTTTGTTTGAAATAAA
GTTCACTAATGCGATCGCGAATACGCAATAAATCGTTTGCACCGATCACC
ATTTTGTTGACAGTTTTACAGTTACAATCATCACTTGATGTAGATGTTGC
GGATGTCACCGTTATAACGTTTTGATGTGACATATTAttgttgtttaaaa
aatattcactGTGTTTGTGTTGTTGAAGTTCTGAAACAACCATTTTCCAA
TGTTGTAGAATGTTTATGTTTTCTCTTTAGTCAGTCATGTAGAACTGTCT
GTATCCGATTGTTTGAAATTGATAGACTctctttgactttttttttaatc
cacACTAATATGCGCGTCTTAGATCTTTCTTGTTTGACTACCAACAATTA
ACTGATTTGAACTAGCCAACGATCAATCGTTTTTATAACTCCATTTAATT
gaataacaacaacaaaaagataCACAAAAAATGTTCGTATGTCAATGATA
ACAAAACCCAAATGGATGACGATGTGTTGTGGTCCTTATCTATCCGTCGA
TTTTACTTATTTCTTTCTCCTGTTATGATATAGttaatattttttctatc
tactttgttattttttcattttgactgTACAATGTTTGTCTGATATCTGA
AAGCTTTCAATTGACACTGTATGTATTTATTCGAAGGTTGACAATGAGAA
GCGCAGTCGCATTGCTTTCGTAATACGACTTTTTAAACAATTATCTCGTG
GTATAGAAAAAACAATAAGGAAAATCCTGATACGTCAACTTTGAGCAA
Run BLAST on NCBI

protein sequence of TCONS_00029294-protein

>TCONS_00029294-protein ID=TCONS_00029294-protein|Name=TCONS_00029294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MVVSELQQHKHSEYFLNNNNMSHQNVITVTSATSTSSDDCNCKTVNKMVI
GANDLLRIRDRISELYFKQNVIVAPCLSKLYMARDGCDTTVDNQTTDNPD
WVYFGMGIVALIYX
Run BLAST on NCBI

transcript from alignment at sc0000735:145234..146131

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029294 ID=TCONS_00029294|Name=TCONS_00029294|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at sc0000735:145234..146131 (Clytia hemisphaerica)
TTGCTCAAAGTTGACGTATCAGGATTTTCCTTATTGTTTTTTCTATACCA
CGAGATAATTGTTTAAAAAGTCGTATTACGAAAGCAATGCGACTGCGCTT
CTCATTGTCAACCTTCGAATAAATACATACAGTGTCAATTGAAAGCTTTC
AGATATCAGACAAACATTGTAcagtcaaaatgaaaaaataacaaagtaga
tagaaaaaatattaaCTATATCATAACAGGAGAAAGAAATAAGTAAAATC
GACGGATAGATAAGGACCACAACACATCGTCATCCATTTGGGTTTTGTTA
TCATTGACATACGAACATTTTTTGTGtatctttttgttgttgttattcAA
TTAAATGGAGTTATAAAAACGATTGATCGTTGGCTAGTTCAAATCAGTTA
ATTGTTGGTAGTCAAACAAGAAAGATCTAAGACGCGCATATTAGTgtgga
ttaaaaaaaaagtcaaagagAGTCTATCAATTTCAAACAATCGGATACAG
ACAGTTCTACATGACTGACTAAAGAGAAAACATAAACATTCTACAACATT
GGAAAATGGTTGTTTCAGAACTTCAACAACACAAACACagtgaatatttt
ttaaacaacaaTAATATGTCACATCAAAACGTTATAACGGTGACATCCGC
AACATCTACATCAAGTGATGATTGTAACTGTAAAACTGTCAACAAAATGG
TGATCGGTGCAAACGATTTATTGCGTATTCGCGATCGCATTAGTGAACTT
TATTTCAAACAAAATGTCATTGTTGCTCCGTGTTTATCCAAACTATACAT
GGCTCGCGATGGTTGCGACACAACCGTAGACAATCAAACGACCGATAATC
CCGATTGGGTTTATTTCGGTATGGGAATCGTAGCATTGATTTACGANN

Coding sequence (CDS) from alignment at sc0000735:145234..146131

>TCONS_00029294 ID=TCONS_00029294|Name=TCONS_00029294|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000735:145234..146131 (Clytia hemisphaerica)
ATGGTTGTTTCAGAACTTCAACAACACAAACACagtgaatattttttaaa
caacaaTAATATGTCACATCAAAACGTTATAACGGTGACATCCGCAACAT
CTACATCAAGTGATGATTGTAACTGTAAAACTGTCAACAAAATGGTGATC
GGTGCAAACGATTTATTGCGTATTCGCGATCGCATTAGTGAACTTTATTT
CAAACAAAATGTCATTGTTGCTCCGTGTTTATCCAAACTATACATGGCTC
GCGATGGTTGCGACACAACCGTAGACAATCAAACGACCGATAATCCCGAT
TGGGTTTATTTCGGTATGGGAATCGTAGCATTGATTTACGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016698XLOC_016698Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029294-proteinTCONS_00029294-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029294-exon-sc0000735-1491911889:145234..146131TCONS_00029294-exon-sc0000735-1491911889:145234..146131Clytia hemisphaericaexon
TCONS_00029294-exon-sc0000735-1510915933:145234..146131TCONS_00029294-exon-sc0000735-1510915933:145234..146131Clytia hemisphaericaexon
TCONS_00029294-exon-sc0000735-1575043694:145234..146131TCONS_00029294-exon-sc0000735-1575043694:145234..146131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000735supercontigsc0000735:145234..146131 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.154475	0.100425	0	0.0570389	21.2484	15.858	21.7138	20.7001	17.5734	17.3065	7.61652	30.6924	15.5132	11.5228	13.596	10.3232	12.756	14.1839	14.7242	15.4078	6.47206	5.31806	6.25817	5.63591	10.6699	10.164	30.5015	20.2696	1.25734	0.989885
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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