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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029295 ID=TCONS_00029295|Name=TCONS_00029295|organism=Clytia hemisphaerica|type=transcript|length=1158bp
tttcggcTTTGAGGCATTTTCAATAATCCTCGTTAATTATCTTCTTTGGT
TTGATTTGACTTAAAAATATTCTGTCTCTTTTACAAATAATTAATATTTA
cattaaattttctattttcattaaatttatttacacattcgaaaaaaatg
aaaataaagtaaaagcaacaaaaaatgatttaaaacatTAAATTGTCTAT
AGTTCTGTCACACATAGATCAGTTGACGGCGTATCTTCCGTACGTAGCGT
CTTAACCCAGTGTTTACGTTCACGTTGATTTCGCGCCGTAAGTCCGGCTT
CAATAACGAATTTCATTGAATCGCATAATAACATTGTGTCTGTGAAAGCA
CGTGGTTTGATAAGCTTTACACTTCTCTCGTATTGTTTTGAGTCCTCGTT
AGATTCACCAGAGCTTTGGTTTTCTAATACTTTACTGTTTTTTCGATCTT
CAACTTGAAGTGATTGTGTTCTTGATATTCTACGTTTCTTGAATAGAATT
TTTGTCaagttttctttaaatttattgCTTTCATCGCTGAAAGATTTCTT
CGGTTTAGTAATAGTTGTGATTGGTGTTTCAGCGATTGATTCACAATCAA
AAGAAGTGCTTCTCATTTTACGAAACGAATCAGCTCTGGAAAGTTTCAAT
AATCTTGTTTGATCCGTGCAATCACTTTTTGGTCGACAATCAGTTGAAAT
CTCAATAGCTCTACGCGCCATATGTCCTGAAAATTGATGTACTGTCGCAC
TTCGTAATTTTGTTTGCGGTGGTTGTTCCTTAGTTGGTGAATTAATACGA
GAAACTTTGCGTAACAAAGTGTCTTTTAACGATCCTCTTCGATCTTCGTT
TTTATGTAATGATCGCTTTAACGGTAAAGAAAAAGTTGGTTTTAAGAGAG
CTTTGGTAGTATCAATAAGATCAACACCGCTGTATCGCCTCGCTTCTTTG
ATACTTTCAAAAATCAGCGAAATTGTCTGTGCGATGAGTTCGGCGACGTC
TTTATTTTCGAACAAGATACCAATATGTTGGTCTTCAATATTGTTTGTTA
TGGTATAAAAATTCGACATTGTCATTTGCGTTGCGACTTTTGTTGTCCAT
TTTAAACACCACATTAAGCGGACCTCGTTCCGATCGAAAAGTGTCATTTT
AACGTCNN Run BLAST on NCBI protein sequence of TCONS_00029295-protein >TCONS_00029295-protein ID=TCONS_00029295-protein|Name=TCONS_00029295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
DVKMTLFDRNEVRLMWCLKWTTKVATQMTMSNFYTITNNIEDQHIGILFE
NKDVAELIAQTISLIFESIKEARRYSGVDLIDTTKALLKPTFSLPLKRSL
HKNEDRRGSLKDTLLRKVSRINSPTKEQPPQTKLRSATVHQFSGHMARRA
IEISTDCRPKSDCTDQTRLLKLSRADSFRKMRSTSFDCESIAETPITTIT
KPKKSFSDESNKFKENLTKILFKKRRISRTQSLQVEDRKNSKVLENQSSG
ESNEDSKQYERSVKLIKPRAFTDTMLLCDSMKFVIEAGLTARNQRERKHW
VKTLRTEDTPSTDLCVTEL Run BLAST on NCBI transcript from alignment at sc0000735:147128..148285 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029295 ID=TCONS_00029295|Name=TCONS_00029295|organism=Clytia hemisphaerica|type=transcript|length=1158bp|location=Sequence derived from alignment at sc0000735:147128..148285 (Clytia hemisphaerica)
NNGACGTTAAAATGACACTTTTCGATCGGAACGAGGTCCGCTTAATGTGG
TGTTTAAAATGGACAACAAAAGTCGCAACGCAAATGACAATGTCGAATTT
TTATACCATAACAAACAATATTGAAGACCAACATATTGGTATCTTGTTCG
AAAATAAAGACGTCGCCGAACTCATCGCACAGACAATTTCGCTGATTTTT
GAAAGTATCAAAGAAGCGAGGCGATACAGCGGTGTTGATCTTATTGATAC
TACCAAAGCTCTCTTAAAACCAACTTTTTCTTTACCGTTAAAGCGATCAT
TACATAAAAACGAAGATCGAAGAGGATCGTTAAAAGACACTTTGTTACGC
AAAGTTTCTCGTATTAATTCACCAACTAAGGAACAACCACCGCAAACAAA
ATTACGAAGTGCGACAGTACATCAATTTTCAGGACATATGGCGCGTAGAG
CTATTGAGATTTCAACTGATTGTCGACCAAAAAGTGATTGCACGGATCAA
ACAAGATTATTGAAACTTTCCAGAGCTGATTCGTTTCGTAAAATGAGAAG
CACTTCTTTTGATTGTGAATCAATCGCTGAAACACCAATCACAACTATTA
CTAAACCGAAGAAATCTTTCAGCGATGAAAGcaataaatttaaagaaaac
ttGACAAAAATTCTATTCAAGAAACGTAGAATATCAAGAACACAATCACT
TCAAGTTGAAGATCGAAAAAACAGTAAAGTATTAGAAAACCAAAGCTCTG
GTGAATCTAACGAGGACTCAAAACAATACGAGAGAAGTGTAAAGCTTATC
AAACCACGTGCTTTCACAGACACAATGTTATTATGCGATTCAATGAAATT
CGTTATTGAAGCCGGACTTACGGCGCGAAATCAACGTGAACGTAAACACT
GGGTTAAGACGCTACGTACGGAAGATACGCCGTCAACTGATCTATGTGTG
ACAGAACTATAGACAATTTAatgttttaaatcattttttgttgcttttac
tttattttcatttttttcgaatgtgtaaataaatttaatgaaaatagaaa
atttaatgTAAATATTAATTATTTGTAAAAGAGACAGAATATTTTTAAGT
CAAATCAAACCAAAGAAGATAATTAACGAGGATTATTGAAAATGCCTCAA
Agccgaaa Coding sequence (CDS) from alignment at sc0000735:147128..148285 >TCONS_00029295 ID=TCONS_00029295|Name=TCONS_00029295|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at sc0000735:147128..148285 (Clytia hemisphaerica)
GACGTTAAAATGACACTTTTCGATCGGAACGAGGTCCGCTTAATGTGGTG
TTTAAAATGGACAACAAAAGTCGCAACGCAAATGACAATGTCGAATTTTT
ATACCATAACAAACAATATTGAAGACCAACATATTGGTATCTTGTTCGAA
AATAAAGACGTCGCCGAACTCATCGCACAGACAATTTCGCTGATTTTTGA
AAGTATCAAAGAAGCGAGGCGATACAGCGGTGTTGATCTTATTGATACTA
CCAAAGCTCTCTTAAAACCAACTTTTTCTTTACCGTTAAAGCGATCATTA
CATAAAAACGAAGATCGAAGAGGATCGTTAAAAGACACTTTGTTACGCAA
AGTTTCTCGTATTAATTCACCAACTAAGGAACAACCACCGCAAACAAAAT
TACGAAGTGCGACAGTACATCAATTTTCAGGACATATGGCGCGTAGAGCT
ATTGAGATTTCAACTGATTGTCGACCAAAAAGTGATTGCACGGATCAAAC
AAGATTATTGAAACTTTCCAGAGCTGATTCGTTTCGTAAAATGAGAAGCA
CTTCTTTTGATTGTGAATCAATCGCTGAAACACCAATCACAACTATTACT
AAACCGAAGAAATCTTTCAGCGATGAAAGcaataaatttaaagaaaactt
GACAAAAATTCTATTCAAGAAACGTAGAATATCAAGAACACAATCACTTC
AAGTTGAAGATCGAAAAAACAGTAAAGTATTAGAAAACCAAAGCTCTGGT
GAATCTAACGAGGACTCAAAACAATACGAGAGAAGTGTAAAGCTTATCAA
ACCACGTGCTTTCACAGACACAATGTTATTATGCGATTCAATGAAATTCG
TTATTGAAGCCGGACTTACGGCGCGAAATCAACGTGAACGTAAACACTGG
GTTAAGACGCTACGTACGGAAGATACGCCGTCAACTGATCTATGTGTGAC
AGAACTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029295-exon-sc0000735-1491911889:147128..148285 | TCONS_00029295-exon-sc0000735-1491911889:147128..148285 | Clytia hemisphaerica | exon |
| TCONS_00029295-exon-sc0000735-1510915933:147128..148285 | TCONS_00029295-exon-sc0000735-1510915933:147128..148285 | Clytia hemisphaerica | exon |
| TCONS_00029295-exon-sc0000735-1575043694:147128..148285 | TCONS_00029295-exon-sc0000735-1575043694:147128..148285 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000735 | supercontig | sc0000735:147128..148285 . |
Blast
The following BLAST results are available for this feature:
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