TCONS_00029299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029299
Unique NameTCONS_00029299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029299 ID=TCONS_00029299|Name=TCONS_00029299|organism=Clytia hemisphaerica|type=transcript|length=2142bp
TCCATCAGATACATCTTGTGGAGGTGAATGGTCAGCCGCACGCAATACGG
AACGGAAAAGAAAATCGGTTGACTATACTGGTCTATACGTTGCCACATGT
CGCCATCAGTATGGTCTGAAATCTGTCAATATGAAACGTGGCGAGATTTA
TGCATACCCAGCGTATTTGTTAACAACATTTATTTTGCCAAACAACGTGG
AATTTCTCTTTGCAGATGTCATGTGCAAATTGTGGATTTACCTTTCAAAA
CTCGATCCTTCTCTCACATCTAAAATCAAAGGTGCTCTGAGTGTAATGCA
TGCTAAAGGACACAACCTAAATTGTCAGATCGTGAAGAGACACTTACTGA
AATGGTTATGTTCTGGAACAGACGAAAAACATTGAATCTTGCTGAGAATC
TTCGAAAGAAATACAACCGGGTGACAAGAGAAGTGTCGAGTTTCACCTCA
AAGTTGAATAACAAATGTCTGGAAATGAATATATCCATCGAGAATGTCGA
TTTCGTATCCCTCATGAATAAACTAAAGAGTTTCGCTCATGGAGGCTCTT
TATCACCCGCAAAACCAACACCTCTCCAGCAAATGATACTCTTGGAGCAT
GATCTTAAACAATATCCATCTTGTGCATCACAGAATTCGAAAGACTTACT
CCAGAAGATATCATTACCTGATCTAACGAACCTTAAAATTCCTCTACTGG
CGAAGAGCAAGTCTGAAAAAGAATCACTTTTATCCACTACTTGGGATAAT
AAAATAAGTACTCAACTGATGAATTGGGAACTCGAGACTTTGAAAAGCAC
CGTTCTTGTCCCTGCTTTCCAAAATGCAATACATTCGTGTCGCTTCGAAA
TGCTTGATTGGAATATAAAGTTGGAGAAATATGCAGACTCGGCAAAACTA
AGAAATACATGTCGATCAAAATACGCTGAAGTTAACAAGAAGCTGAAGTC
GCTTATGGAACGTTTTATAACAATAAAATCTTGTGAAGCTGACTGCGAGT
TCGAACTGATTAAAGAGTCTAATCATCGACAACTACTGGAATGGGATGCA
AAGAGAAAACGCTGCCACGAAGAAATTGATTTATTGAAGAGAGATATGGA
ATCTTATCTAACGTTTTACTCGTCAAAAATCACAGAGTTGAATGCTACCA
TCGATGCTAGTGTTGTCTTTGAAAAGGCTAATGATCTTGGTGTGAATGCT
TTGACGCGGATTGGAATTGATTTTGCTCGGAAACAGTTGCAAAAAGGATT
CGCTTGTTTTGTTTCAATTCTCCCACTAGAGCGGATGCAATACTTTAAAA
CAATCACTGGATTGGATGAGATAGACGAGCACTACCGTGTtttagaagaa
gaagaaaacgaagagtacGAGGTAGAGGAAGCAACAGTTACCGAAATCGA
AAGAGAAAATGAACTGGCCTTCGAAATCGATCAAATTGACCTCGAACTGA
ACATGGAAACAGTAAATTCTCTGGGACTTGACTTATTAGGATACTTTGAA
CTTGGTCAATGTACACAGGGCGGGAATTTTGTTATTCTTCCCGGGCATTT
AAGCCAGGGAAGGTTGAATGGTAGGAATGGAAGTAATGCGTGTTCTGTCA
TTGCTGTCTTGGCTGGTTATTTTTTCAGCACATTCTCAtcgaaaattaat
tttcacaaTAGTGCCGCATTATTCGTAGGTTGTATCGAAACTGGAAACTC
CCTATATGATGAAAATCAGAATCTTCTAGTGCATGAAGCCATTGATTTGA
TTCCGATTTCGCTCAAAATCTTCGAAGAAAGGAACTCTTTTCCAAAAGAC
CTTTCTAATGTAATTGAGTTATTGTTTTTGAAGTCAGAGATTGTCATTGT
GACTTGCAACATCCAGTCAGTCTGCTTGGTTCGTTCTTCGATTGACCGaa
agatttatttatttgacTCTCATCAACACAACGAGATGGGTCCCTTGATT
GCTTGGACTGAAAACGGTATTCAAGATATTATTCCGCAAATTCCTTTCAA
AAATGATAACGATGAAATATATTTATGTTCCATTcaatactaattttttt
ttattttctgttagctctttttttttttcattaaggTTGTACCAAAAAGC
ATTTTATACTGCGACGAAAAAACCGTGACAAATagaataatt
Run BLAST on NCBI

transcript from alignment at sc0000736:21757..26179+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029299 ID=TCONS_00029299|Name=TCONS_00029299|organism=Clytia hemisphaerica|type=transcript|length=4423bp|location=Sequence derived from alignment at sc0000736:21757..26179+ (Clytia hemisphaerica)
TCCATCAGATACATCTTGTGGAGGTGAATGGTCAGCCGCACGCAATACGG
AACGGAAAAGAAAATCGGTTGACTATACTGGTCTATACGTTGCCACATGT
CGCCATCAGTATGGTCTGAAATCTGTCAATATGAAACGTGGCGAGATTTA
TGCATACCCAGCGTATTTGTTAACAACATTTATTTTGCCAAACAACGTGG
AATTTCTCTTTGCAGATGTCATGTGCAAATTGTGGATTTACCTTTCAAAA
CTCGATCCTTCTCTCACATCTAAAATCAAAGGTGCTCTGAGTGTAATGCA
TGCTAAAGGACACAACCTAAATTGTCAGGTAGctttacttttttataaaa
ttctgTTACAGATTTAGTCATCCTTATTTATTACCCATTTGGCGCGTTAG
TAAAAAAATTCGAGTATTCCTCTAGCGCTATTCAATGTTTTTATTCCAGT
AATTACTCTTTTAAGGCTTAATTGTAGGTAGGTAAAGTAATTCTgtattt
tttctgtattttcactaTCTGCCCACCTCCATTTTAAGAAATTGTGAATG
AGTGACTACCCAGCCCTTTGCTGCCGATGCAATAGAGTTTTAAAAAGGTA
GTTTTATACGGTCATCAATTGTTATGCTTTCAATTAGGTCAATTGGGATG
GTCAATGGATTCAAGGCACTGGAAAGTCTACTGGAGAAGAATGCGAACAA
CTTTTTTCATATCTCTCACGCTGCGCAAACACCACGAAATATCAGACACC
TGAAAGTTAGGATTATTCTTTCTATAAAATTTGGACGATTTGATTTGGAT
GTTATTTTCTTGGATCTGCTTGGGATCGATACGTTCAATATTCAACTGTT
TTCTTTTCTAGTACCAAATGTCTCAAATCAGCCTGTAATGCACGCGGGTT
CACTCAAAGTAGGATAGTCCAATTAAGTAAACATTTTGTGAGGAAATAAT
ATTAAATTCGCATAAATCCTATTGTTGAACCTCTTAGATCGTGAAGAGAC
ACTTACTGAAATGGTTATGTTCTGGAACAGACGAAAAACATTGAATCTTG
CTGAGAATCTTCGAAAGAAATACAACCGGGTATGTTCTCATTTGTGCTGT
AGATCGAAATAATTTATTTCGAAAGCCATTAGCGGATGCACACTTTTTTA
TACgcaaccgagttgctaaggGACCAGCcctgaaaatgaccaaaaactaA
GCAAGGCTTGACAACCAATCCTTGAGACTAGGAAAGTAAATAAAAGTccc
taaaaagatgtgtttttCAATAGTTTTGCGTTAAAAAGCACATTATAGGT
ACATTTTTATGTAATTTAGGTGAACAATGTGataaaatcccaaaatttta
aaaattgcgAAGCATTTCGGGCTAAAAATTTATAAGCAACATTTAGtctg
aaattctgaaaattcATAGCAATCACAGCCTTGAGCTTGAAATTTAGATT
CATTTAAAGCATATGTGTCATTATATGGGTCATTTCTAGATGTTATATTT
CATTTCACAATTATTATTCTTAGGTGACAAGAGAAGTGTCGAGTTTCACC
TCAAAGTTGAATAACAAATGTCTGGAAATGAATATATCCATCGAGAATGT
CGATTTCGTATCCCTCATGAATAAACTAAAGAGTTTCGCTCATGGAGGTA
TGGTGTACATATTCAGAATTCTCGATCTTTCTTTTGGTTTATTTTAAGAC
ATAAGATACTAATAATTTGACTCTATAATATTTCCTTCATAAGGATTTAT
ACGAATGAAAACTTtcacaatcttttaaatatGTGTTAAGAAGGATCGCA
CAAGCAAGAAttgttaaatgtttttattactTGTATTGTTttcttctctc
tctctctagGCTCTTTATCACCCGCAAAACCAACACCTCTCCAGCAAATG
ATACTCTTGGAGCATGATCTTAAACAATATCCATCTTGTGCATCACAGAA
TTCGAAAGACTTACTCCAGAAGATATCATTACCTGATCTAACGAACCTTA
AAATTCCTCTACTGGCGAAGAGCAAGTCTGAAAAAGAATCACTTTTATCC
ACTACTTGGGATAATAAAATAAGTACTCAACTGATGAATTGGGAACTCGA
GACTTTGAAAAGCACCGTTCTTGTCCCTGCTTTCCAAAATGCAATACATT
CGTGTCGCTTCGAAATGCTTGATTGGAATATAAAGTTGGAGAAATATGCA
GGTTTTATGCTTTCGTTAATTACAATACCTACGTTAACTATAATTGCCGG
ATTGAAATAAATACATCCCTGTtggaaaatcactaaaaaagaCAGTGATA
TTATGAATAATTCAGGCCATGGAAGGATGTTTgaggaaatttttcaaaaa
actaataaagagtttggaataagaatgtcctggatTAAAAATGATGACAT
CTATTAGATACCTAAGAGTACAGGACCTTATCGGTCAATCCTTCAATCCT
CCAGACCCACAGAAAAAACACGATTTATgcaaaaaaatgctttaaatgat
aaaaattaaaatgacattcccttaaaatctttctttataGACTCGGCAAA
ACTAAGAAATACATGTCGATCAAAATACGCTGAAGTTAACAAGAAGCTGA
AGTCGCTTATGGAACGTTTTATAACAATAAAATCTTGTGAAGCTGACTGC
GAGTTCGAACTGATTAAAGGTGAAGTATATACCCTGTGTATTCTTTTTTT
TCGGGTAATTTTGCTGTAAACCTCATGTAcgtttaaaaaaaggtttaaaa
aagtgTACATTGACTATGCGAACTGTATATTTACTATAGGTGAATAAAta
taatacttttttttatatataacatAGTAAGTTTGGCCAAGAttttcttt
cgtaaatttcgTTTATTTGCAGTCTTGTGTTGCACAGATTGGTGCCAATA
CAGGTTATGGTCATTTTTAATTCCAAAACTTTCTCTTTATCAGAGTCTAA
TCATCGACAACTACTGGAATGGGATGCAAAGAGAAAACGCTGCCACGAAG
AAATTGATTTATTGAAGAGAGATATGGAATCTTATCTAACGTTTTACTCG
TCAAAAATCACAGAGTTGAATGCTACCATCGATGCTAGTGTTGTCTTTGA
AAAGGTACAcatgttttataagaattacaAGGTTCAACATATTTTTGGAA
TCGTACAGCTTTGGCTCAAATGGTTCAAGCTAATGTTTCAAGCTAATGTT
TCCTTCATTCTATTTGGTATTTATCCTTTAGGTTGTTTTGAGCAAAGTGT
AGGGAAAAATAAGCTTTCGAAACTAATTTGATCGAATGCGCATTAATATT
TCTTGCGTTTTAACCTTCTTTTAAGAACCTAAAAGTTCTTCGACAAACCA
ATTTTAAACCCATCCTTagggaaaaaaaacaaagcaagCAAGAGATATTT
TGTAGATATTTTGCTGTCAAAATCAGATATAGATATTATATTTGAATTCC
ATCTTAGGCTAATGATCTTGGTGTGAATGCTTTGACGCGGATTGGAATTG
ATTTTGCTCGGAAACAGTTGCAAAAAGGATTCGCTTGTTTTGTTTCAATT
CTCCCACTAGAGCGGATGCAATACTTTAAAACAATCACTGGATTGGATGA
GATAGACGAGCACTACCGTGTtttagaagaagaagaaaacgaagagtacG
AGGTAGAGGAAGCAACAGTTACCGAAATCGAAAGAGAAAATGAACTGGCC
TTCGAAATCGATCAAATTGACCTCGAACTGAACATGGAAACAGTAAATTC
TCTGGGACTTGACTTATTAGGATACTTTGAACTTGGTCAATGTACACAGG
GCGGGAATTTTGTTATTCTTCCCGGGCATTTAAGCCAGGGAAGGTTGAAT
GGTAGGAATGGAAGTAATGCGTGTTCTGTCATTGCTGTCTTGGCTGGTTA
TTTTTTCAGCACATTCTCAtcgaaaattaattttcacaaTAGTGCCGCAT
TATTCGTAGGTTGTATCGAAACTGGAAACTCCCTATATGATGAAAATCAG
AATCTTCTAGTGCATGAAGCCATTGATTTGATTCCGATTTCGCTCAAAAT
CTTCGAAGAAAGGAACTCTTTTCCAAAAGACCTTTCTAATGTAATTGAGT
TATTGTTTTTGAAGTCAGAGATTGTCATTGTGACTTGCAACATCCAGTCA
GTCTGCTTGGTTCGTTCTTCGATTGACCGaaagatttatttatttgacTC
TCATCAACACAACGAGATGGGTCCCTTGATTGCTTGGACTGAAAACGGTA
TTCAAGATATTATTCCGCAAATTCCTTTCAAAAATGATAACGATGAAATA
TATTTATGTTCCATTcaatactaatttttttttattttctgttagctctt
tttttttttcattaaggTTGTACCAAAAAGCATTTTATACTGCGACGAAA
AAACCGTGACAAATagaataatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016701XLOC_016701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029299-exon-sc0000736-1491911889:21757..22084TCONS_00029299-exon-sc0000736-1491911889:21757..22084Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1510915933:21757..22084TCONS_00029299-exon-sc0000736-1510915933:21757..22084Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1575043694:21757..22084TCONS_00029299-exon-sc0000736-1575043694:21757..22084Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1491911889:22744..22835TCONS_00029299-exon-sc0000736-1491911889:22744..22835Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1510915933:22744..22835TCONS_00029299-exon-sc0000736-1510915933:22744..22835Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1575043694:22744..22835TCONS_00029299-exon-sc0000736-1575043694:22744..22835Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1491911889:23280..23403TCONS_00029299-exon-sc0000736-1491911889:23280..23403Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1510915933:23280..23403TCONS_00029299-exon-sc0000736-1510915933:23280..23403Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1575043694:23280..23403TCONS_00029299-exon-sc0000736-1575043694:23280..23403Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1491911889:23616..23957TCONS_00029299-exon-sc0000736-1491911889:23616..23957Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1510915933:23616..23957TCONS_00029299-exon-sc0000736-1510915933:23616..23957Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1575043694:23616..23957TCONS_00029299-exon-sc0000736-1575043694:23616..23957Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1491911889:24297..24425TCONS_00029299-exon-sc0000736-1491911889:24297..24425Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1510915933:24297..24425TCONS_00029299-exon-sc0000736-1510915933:24297..24425Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1575043694:24297..24425TCONS_00029299-exon-sc0000736-1575043694:24297..24425Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1491911889:24700..24860TCONS_00029299-exon-sc0000736-1491911889:24700..24860Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1510915933:24700..24860TCONS_00029299-exon-sc0000736-1510915933:24700..24860Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1575043694:24700..24860TCONS_00029299-exon-sc0000736-1575043694:24700..24860Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1491911889:25214..26179TCONS_00029299-exon-sc0000736-1491911889:25214..26179Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1510915933:25214..26179TCONS_00029299-exon-sc0000736-1510915933:25214..26179Clytia hemisphaericaexon
TCONS_00029299-exon-sc0000736-1575043694:25214..26179TCONS_00029299-exon-sc0000736-1575043694:25214..26179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000736supercontigsc0000736:21757..26179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398168	0.27231	0.142419	0	1.52264	1.0828	3.30777	3.18141	1.41397	2.22468	0.72132	3.09079	1.4209	1.99992	0.321672	1.72765	0.412757	0.620002	0.396468	0	1.72883	1.09224	1.60421	1.42309	1.10632e-06	4.85178	0.48668	0.127851	2.72827	1.29606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top