TCONS_00029303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029303
Unique NameTCONS_00029303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029303 ID=TCONS_00029303|Name=TCONS_00029303|organism=Clytia hemisphaerica|type=transcript|length=1201bp
AGTCAATACACGTAGCTCGCAGCTTGAGATAAATATGGATCCAGCAGATA
GAGAAACTAATGAACAACCTTATTTGGACCAAAATGCGGCAGTTCCAGTT
CTAGGAACATTAACAGGAAGAGCAGAAAACCTTAAGCGTAATGGGCCTGT
TTTGAAGTTGTGGACACTAAAAAGAGATCACGAGCAACATTGTATTTGCC
TTacgataaagaagaaaaaagacgGCACCTTCAAAATTGATGGGTTGACG
ACGCAAGGATGGGCTTCTAACTTTTGGAGTGATAGAGAGAATAATGGCTC
ACCATCCAATTTGCTTTTCAAAGTATTGAAAAAGGCAGTCAGAGAGAaTC
CTCCCTTAGAGGATGATGAATTAGAGCTTTTAGTCGAAGCAGATTCTACA
CAAGATTCTCCTGAGAATTCTCAAGATATTCCTCTTGGTCACCAATCTTT
TGTGTTGCCGTCGATTTCTACCTTAGATTCTTCTGAGACTGACCAAGATA
ATCCTGTTCGTCAATCGATTATGTCAACGTCTATATCAAAATCTTCTATG
ACTGGACAAGATCGCCAATCGACTATGTCACCGTCAATGTCTATACCAAC
TCCAGACAGTGAAGTGAACCTCAAAGATCTTACTGCCATAAATACGATGG
AAGTTGTAGCAGCATACACCGATTCAATTGAAGATccgttttggttgttt
ttggtgGAGAAGCATGTTCTTAATCTCCCTGAGCACATGCTTTCTAAAGa
gccactttcaaaaaagcagAAAGTAACTAATACCCACGGATACCTTCTCG
GTTACTGGTTCGAGAAAACCCAAATTGAGGGACAGTATCAATGCAGTCCA
CCGAGAACCAACACCGGTACTCAAACCCTTGTCAGGTTCGGTGAAAACCT
CAATAATATTTATGTGTTGCCAAAACACAAAGTTTGTGACCAATTTTATA
TACTCCCGAATTTGTTGAAAGAAACTCTCATTCGAGAGATATCGAGGAGA
GTATAAAGGTCTCAACTGCGGTtgagcaatgatgatgatgataaagTTGA
ACATTTATACCATCATCGATATCTATCAAAtgaaagtttctttcaaaaat
ttggaatcAAGAAAATTTGACTAAAGGGTCATTGGACTCATACACGTTTT
ATTATCCATAAGCATTTGTTGGAATTTCTATTGTTATAGAACaatttcgt
t
Run BLAST on NCBI

transcript from alignment at sc0000736:34309..40272-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029303 ID=TCONS_00029303|Name=TCONS_00029303|organism=Clytia hemisphaerica|type=transcript|length=5964bp|location=Sequence derived from alignment at sc0000736:34309..40272- (Clytia hemisphaerica)
AGTCAATACACGTAGCTCGCAGCTTGAGATAAATATGGATCCAGCAGATA
GAGAAACTAATGGTACAGCTTTTTATTCCGATTTTTTTTGTGTTGATTTT
GATTTTGATATTATTTTTCATTAACCGTGATTAAGACAATATTTGGTAAT
CGGTTGCACTTATAGAATACTTGAATCTGGTTTGTCCAAGCAAATAAATT
TTTTTGAGTTATTGATTTTTATAAGAATTTTTCGTTTCCTGATTTTTATT
TTGTTTTTTTCTTTAAATTCAACATGATCTTTGTACTAGGATTGGTTGAT
TAGTTTAACAATATTATTAGTTATTGACTTACAATTTATTATATTACAGA
GCTCAACAAACAAGACATGACTTCACGTATACTAAAACACTTGACAAGAC
AATGACATAGACAGTTCAAAAAACTGACGACGGAAATTTTTCTTTTCAAA
TATGAATGATTGAACTTCTACGCTAATTAAATCCTACGTCGTTTACAATT
TCACGGGTCCCGGTTGCGCTGTTTCTTACATAAGATTATCGAAACAAACA
TTATTTCAACGTTAAAAAGAGCACGCAACTTGTGAGGAATCTGCGATTCG
ATCCCATCCNGCCACTGCACGCAGCTTGTGAGGAATCTGCCCGGAATCTG
CGATTCAATCCCATCTCGATAATTGCTTGAATCGTGTGCATTTATTTTCA
CTTAACTATGTTTATGAAAGATGTTGTCCCTGATCATTTCAGGTTGAATT
TAGTTCGTAACAACATGTTAGTGATCGGCACTGCGAACTGTTACACAATA
GAATTTGAAGAAGCATATTTTATAAAAGAAAAGTAACCATTGCTTAACAA
TGAAATCAAGGCCGCTAAAAAGTCAACGACGTGATTTTATTTCCTTTGTA
TAATCTTTTGTATAAGTTATTTATAAGTTTTTATTCCCAAATGTATTTAA
TATCTTTTAGCAATATACCAATTTATCTTCATCAGGTAGCTTGTAGAATT
TCAGTTTTTAATGTTGTGGTAAAGGCTATCGAAATATCATCGTGCCATTA
TTTTCTGACTTAATTTTCAAATTTTAAAGATGCACCTATTCGGGATTCGT
TTTCTATTATTAAATTGCTGCAAAGAGTTATCGGGGACGGAACCGTAGTT
ATTATTAATTTAGCATTAGCCCCAAGAAGTCTTACTCAAGATTGTTATTT
CAGAACAACCTAATTTTGTTATTTCAGAACAACCTTATTTGGACCAAAAT
GCGGCAGTTCCAGTTCTAGGAACATTAACAGGAAGAGCAGAAAACCTTAA
GCGTAATGGGCCTGTTTTGAAGGTTACCTTTTAATTTTTCTTAATGTTCA
ATATATTGTATTTTCTCCTGAAGTTGTTTTCTACGACCCTTATTTCTCCC
TAATTTGTTTTTCTTTTAAAAAGGAGTCCATTGTATGACTGTATGCCTGT
ATGTTTTTATTGATAAAAATTACTAAATGTAAAAGTATTAATTATTTGTA
TCTGGATTTAGAAATGCTTAAATGAAAATTGCGAGGAAAGGTCCTACCCG
GGTTGCAAACGATGCAAAAAATGTGGCACTGTCTTCGACAAGCGGTCGAA
GACAATTGAATCTTATATGCCAACTTATAAAACAAATCTGACCACACAGA
CAAAAAAGACAACTGCAAATGTATGTAATCTATGTCAGAAGACTCATTCA
TTATTGATTAAAAAATTTTAATCAATTGGTTTAGAACAAATTCTTTGTTC
ATTCAAAAGTGAACAAAATTCCCAAGCTTTTCGAGGAAAGATTTATAGTC
AATGTCGTATGTGTGGTATAAACTAGTAATACTATTTTGTAAACTTTATC
TCCGCCTGTTCTGCTTTACAGGGCATTAGTGCATTAGTTCACTCAAATTA
TGTTTTCTCTATATTTGATAGGTTATCCTAGCTAAATTCTAAAATCAGAA
TTAGTGTTTTCAATATTCTCTTTTTCAGTTGTGGACACTAAAAAGAGATC
ACGAGCAACATTGTATTTGCCTTACGATAAAGAAGAAAAAAGACGGTACT
TTATTAAGTGCATATTTTCGCAAATTTTAGATTTTTGGAATTGCAGAGTT
TCTCGTGTTTCATGTGTATCAAACCTAAGGTTGCTCTACCACCGGTGTAA
AAATGAACGTTATAGCATAGTAGAAAAAAAGCTCATTTTTTTCATTGGCA
AATTTAAGCGTTAAAAATCGCATATTTTTGAACTAAAAATACATTGAAAT
GTAGCACTTTTGATTCTTTAAAACAAGAAAAAAACATTTTTACAATTGTA
TTTGACTATCAAAAGTTACAGGCATTCTTGCTTCCACTGCCAATTATATG
CGAACAGACTTTAGTTAAGTTTAAACCTAGCTTCCAGTTTTTTCTGAATT
TTTGCAATCTCATAATATCTATCTATACACGTATTATGGTCTCTTTAGAT
TTTAGCAGATTTTAGTTGTGTGAAATTTCGTGAAATTTCAACTTAATAAA
ACTGAAATTAAATGAACGAGACAATCTAAGTATAACCTGTTTTAATTATA
CACTAGGCACCTTCAAAATTGATGGGTTGACGACGCAAGGATGGGCTTCT
AACTTTTGGAGTGATAGAGAGAATAATGGCTCACCATCCAATTTGCTTTT
CAAAGTATTGAAAAAGGCAGTCAGAGAGAGTGAGATTATTATTATCATTG
AAAGTTGTTGGCCAGTGATTTTACTTTTAGCGTTGTCATATCTTGTAATC
AACGACAAAATGATAAATGACAAGCCAATGAGTTTAAAGGGACATAACAG
TACTTGCGAAATTTGTAAACAAAGTGTATGCAGCGGATACAAAATCAAAA
CAAATGTCACATGTCAAAATAAAAAATCAAACCAAATATGGCTAATTTCT
ATTTTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTCATTGTT
CTCTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTACTGTAAT
GTCCCTTTAAGCTCATGATCCATAAAATGTATCAACACATCGTTTTTAAT
GTATAAAGTAGGCATAGCATTTTTAGACTTGAGGTAATTATCAATAGAAA
ATGATTTTACAATTAATTGAATCCAAAACAATTAAGTTACTTTTTGTTCT
CCATCACAACCGAAAAAATAAATTTCTTTCCTTTGTTTTTAGATCCTCCC
TTAGAGGATGATGAATTAGAGCTTTTAGTCGAAGCAGATTCTACACAAGG
TTTATTTTTACTGCTTTTTCTAAGATTTATAACTTTTGTGTGGTTTCATC
TAATTTATCTTTTGTAAAACTTACATTTAAATCTCTATTAGTTACGATAA
TGCACACGTTTGTTTTCTCTTGCTTTTTTTATGAGAAGAAAATTCAATCA
ATGATCTTTTGAAGACTTACTATTCTAGTTTCAACATTTTTCATAGATTC
TCCTGAGAATTCTCAAGATATTCCTCTTGGTCACCAATCTTTTGTGTTGC
CGTCGATTTCTACCTTAGGTAGGCTCAATCTTATGTTTGTATTATAGTTC
ACAGTTTCTCAGTTTTTCATAGTTCCTCTTTTGCAAAGTTTTGATTCTAA
TTCATAGATTCTTCTGAGACTGACCAAGATAATCCTGTTCGTCAATCGAT
TATGTCAACGTCTATATCAAGTAAGTTTGTTAAATATTTTATTAGCAACC
ACCTCCAAATTTGAAATCAAAGCTTGAAGTAAAATATATATGCGAATGTT
CTGCTGGTTAAAGTATAATCTCATATTAGGATCAACCATTCTGTCAGCAC
CACCTTCTGCTCTAAAGGGGTGCGGCGAATGTGATGATCTGACATGATTT
ATCACAAAATGTAAACAAAAATGTGCCACCATCTCTATGCCCGGAGTAAA
GGATCTGCTCGGAGATTAAGGTCCGCTGGTGCCTTTTTACTAACCTGGGT
GGGATCCCAAAAATACCAAAGTAGAAAAATCAGTCCTTCATATAGTTTTA
TTTCAGACCTCTACAAACCTACCTCTTTTCTTTCTGACTGACATCGCTCT
ACTTATGTATCGAGCACTGTAAAAGACTGAAGAATTATTTTCTTTATTTT
ATATAGAATCTTCTATGACTGGACAAGATCGCCAATCGACTATGTCACCG
TCAATGTCTATACCAAGTAAGTTAAATTTGTTTGCATATCCTAGTGGTTC
CGACAGAGGTTGTTCCCTCCTCCTTTAAGCTCCCTAAGATTGAAGTTCCT
CAACTTTGCTAGTTGGTTCTACATGCCCAAGTACATGGTTAGCGGCAAAA
ACATTGCGTCAATCACTTTCAAACTTTTTTTGACTTACAGAAAAACAAAC
AGCGACGGTAGTTTTGCTGTTTAGGGCAAACATAATATATTGATGTACAT
AGAGACAATTATGTTGTTTATTAACGTACGCGAGAAATCTCTACTCATTA
GATATGTACATACTTGACATTTCTTTTCCAGGTAACATATGTAAGTTCAT
GGGTTGATTGTTTGGAGACTTGTTTTCAACGTCAACCAAAAAAGAGTAAA
TTAAAATCAGATAAAAGCTAGCAAAATTTTTCTCTTGACTGCTTGGTCCC
AAAAAATTATAAATAATCACGTCAAAAATTGTTTGTACTAAATGTAACGT
TTAGAAGCATGGTATTCTAAATACAGACCATAAACGAATTCTTAATTTAG
AAGAAACCTTTTCAGAATTGTATTGCATGGAACCCATCAACTTTTGTAGC
TCGAGCATGATTGACAGCTCTTTTGTTACTCTTTTTATTAAAACAAAGTT
GTTTATCCATTTTATCGTCTGGGAAGAGAATTTCTACATTTGATGCCAGA
TAAACAAGGGTATTACTTTTTCCAATTCTGTTAATCGATTCTTTGAATTG
AATTCACGTGTCATAAAACTCTGACTTTCAATCGTTTTAGCTCCAGACAG
TGAAGTGAACCTCAAAGGTAAGGGATATAAAAAGTTTCCGATTGGCATTC
ATAAAAATATCAATTCATAGCTTTCGTTATATTCTTAATCTCAATAATCT
AATGTTCATTTTTATCTTCAAGCTCTTTATTAATTTTGTTTATCGACGTA
TTGATTAGTGCTCCTGACTCCTGTTTGATAGGCTGAAGCTCAATTTCCCT
TATGTCCGCCGTTAGTGATTTTGTGCTGTTAAGTGTTTTTTTGAACTTGC
TAGCCAAAGTGAAGTATGAAGTGCTGGAAGGTCCTAACAAGTACGAAATA
CATATACTGCTCTGGGTCCGTTTATCTCTTTGAATATTGAATAGTTGGAT
AGAAATTTTTTGAAAAGTCGAAACTGGAAGACTACTTCTTCGATACCTCT
TCGATAGAAACCTTTATCTTTTGTTTTCCTTATTTATAGATCTTACTGCC
ATAAATACGATGGAAGTTGTAGCAGCATACACCGATTCAATTGAAGATCC
GTTTTGGTTGTTTTTGGTGGAGAAGCATGTTCTTAATCTCCCTGAGCACA
TGCTTTCTAAAGAGCCACTTTCAAAAAAGCAGAAAGTAACTAATACCCAC
GGATACCTTCTCGGTTACTGGTTCGAGAAAACCCAAATTGAGGGACAGTA
TCAATGCAGTCCACCGAGAACCAACACCGGTACTCAAACCCTTGTCAGGT
TCGGTGAAAACCTCAATAATATTTATGTGTTGCCAAAACACAAAGTTTGT
GACCAATTTTATATACTCCCGAATTTGTTGAAAGAAACTCTCATTCGAGA
GATATCGAGGAGAGTATAAAGGTCTCAACTGCGGTTGAGCAATGATGATG
ATGATAAAGTTGAACATTTATACCATCATCGATATCTATCAAATGAAAGT
TTCTTTCAAAAATTTGGAATCAAGAAAATTTGACTAAAGGGTCATTGGAC
TCATACACGTTTTATTATCCATAAGCATTTGTTGGAATTTCTATTGTTAT
AGAACAATTTCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016704XLOC_016704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029303-exon-sc0000736-1575043694:40211..40272TCONS_00029303-exon-sc0000736-1575043694:40211..40272Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:38951..39045TCONS_00029303-exon-sc0000736-1575043694:38951..39045Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:38228..38294TCONS_00029303-exon-sc0000736-1575043694:38228..38294Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:37594..37716TCONS_00029303-exon-sc0000736-1575043694:37594..37716Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:37024..37080TCONS_00029303-exon-sc0000736-1575043694:37024..37080Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:36755..36826TCONS_00029303-exon-sc0000736-1575043694:36755..36826Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:36603..36665TCONS_00029303-exon-sc0000736-1575043694:36603..36665Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:36107..36166TCONS_00029303-exon-sc0000736-1575043694:36107..36166Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:35306..35332TCONS_00029303-exon-sc0000736-1575043694:35306..35332Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1575043694:34309..34883TCONS_00029303-exon-sc0000736-1575043694:34309..34883Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:40211..40272TCONS_00029303-exon-sc0000736-1510915933:40211..40272Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:38951..39045TCONS_00029303-exon-sc0000736-1510915933:38951..39045Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:38228..38294TCONS_00029303-exon-sc0000736-1510915933:38228..38294Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:37594..37716TCONS_00029303-exon-sc0000736-1510915933:37594..37716Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:37024..37080TCONS_00029303-exon-sc0000736-1510915933:37024..37080Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:36755..36826TCONS_00029303-exon-sc0000736-1510915933:36755..36826Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:36603..36665TCONS_00029303-exon-sc0000736-1510915933:36603..36665Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:36107..36166TCONS_00029303-exon-sc0000736-1510915933:36107..36166Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:35306..35332TCONS_00029303-exon-sc0000736-1510915933:35306..35332Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1510915933:34309..34883TCONS_00029303-exon-sc0000736-1510915933:34309..34883Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:40211..40272TCONS_00029303-exon-sc0000736-1491911889:40211..40272Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:38951..39045TCONS_00029303-exon-sc0000736-1491911889:38951..39045Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:38228..38294TCONS_00029303-exon-sc0000736-1491911889:38228..38294Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:37594..37716TCONS_00029303-exon-sc0000736-1491911889:37594..37716Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:37024..37080TCONS_00029303-exon-sc0000736-1491911889:37024..37080Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:36755..36826TCONS_00029303-exon-sc0000736-1491911889:36755..36826Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:36603..36665TCONS_00029303-exon-sc0000736-1491911889:36603..36665Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:36107..36166TCONS_00029303-exon-sc0000736-1491911889:36107..36166Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:35306..35332TCONS_00029303-exon-sc0000736-1491911889:35306..35332Clytia hemisphaericaexon
TCONS_00029303-exon-sc0000736-1491911889:34309..34883TCONS_00029303-exon-sc0000736-1491911889:34309..34883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000736supercontigsc0000736:34309..40272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.357639	0.488255	0	0.198084	15.0503	9.33213	8.94118	8.55151	3.27744	5.78781	6.32824	1.34402	0	0.292768	0	0.147533	0.067616	0	0	0.477979	0.518674	0	6.08021e-06	0.374679	0.983622	1.01181	0.0801067	0.00229495	0.238171	0.0842996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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