TCONS_00029305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029305
Unique NameTCONS_00029305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029305 ID=TCONS_00029305|Name=TCONS_00029305|organism=Clytia hemisphaerica|type=transcript|length=995bp
ACTACCATTTACTAACCTACTAGCTctacactttttgattttttttaatt
gaatttctttttacacACCTCTAAGCTTAGAACTTAGGCTAGGCATTTAT
AAGAAAGATCAGAGAAAATTAACTCTAAGTCACTTtacaagtttttattt
ttatttcaggaaaTAATCACATATAGTCAATACACGTAGCTCGCAGCTTG
AGATAAATATGGATCCAGCAGATAGAGAAACTAATGAGCTCAACAAACAA
GACATGACTTCACGTATACTAAAACACTTGACAAGACAATGACATAGACA
GTTCAAAAAACTGACGAcggaaatttttcttttcaaatatgaaTGATTGA
ACTTCTACGCTAATTAAATCCTACGTCGTTTACAATTTCACGGGTCCCGG
TTGCGCTGTTTCTTACATAAGATTATCGAAACAAACATTATTTCAACGTT
AAAAAGAGCACGCAACTTGTGAGGAATCTGCGATTCGATCCCATCCNGCC
ACTGCACGCAGCTTGTGAGGAATCTGCCCGGAATCTGCGATTCAATCCCA
TCTCGATAATTGCTTGAATCGTGTGCATTTATTTTCACTTAACTATGTTT
ATGAAAGATGTTGTCCCTGATCATTTCAGGTTGAATTTAGTTCGTAACAA
CATGTTAGTGATCGGCACTGCGAACTGTTACACAATAGAATTTGAAGAAG
catattttataaaagaaaagtaaCCATTGCTTAACAATGAAATCAAGGCC
GCTAAAAAGTCAACGACGTGATTTTATTTCCTTTGTATAATCTTTTGTAT
AAGTTATTTATAAGTTTTTATTCCCAAATGTATTTAATATCTTTTAGCAA
TATACCAATTTATCTTCATCAGGTAGCTTGTAGAATTTCAGTTTTTAATG
TTGTGGTAAAGGCTATCGAAATATCATCGTGCCATTATTTTCTgacttaa
ttttcaaattttaaagatgCACCTATTCGGGATTCGTTTTCTATT
Run BLAST on NCBI

transcript from alignment at sc0000736:39165..40446-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029305 ID=TCONS_00029305|Name=TCONS_00029305|organism=Clytia hemisphaerica|type=transcript|length=1282bp|location=Sequence derived from alignment at sc0000736:39165..40446- (Clytia hemisphaerica)
ACTACCATTTACTAACCTACTAGCTCTACACTTTTTGATTTTTTTTAATT
GAATTTCTTTTTACACACCTCTAAGCTTAGAACTTAGGCTAGGCATTTAT
AAGAAAGATCAGAGAAAATTAACTCTAAGTCACTTTACAAGTTTTTATTT
TTATTTCAGGAAATAATCACATATAGTCAATACACGTAGCTCGCAGCTTG
AGATAAATATGGATCCAGCAGATAGAGAAACTAATGGTACAGCTTTTTAT
TCCGATTTTTTTTGTGTTGATTTTGATTTTGATATTATTTTTCATTAACC
GTGATTAAGACAATATTTGGTAATCGGTTGCACTTATAGAATACTTGAAT
CTGGTTTGTCCAAGCAAATAAATTTTTTTGAGTTATTGATTTTTATAAGA
ATTTTTCGTTTCCTGATTTTTATTTTGTTTTTTTCTTTAAATTCAACATG
ATCTTTGTACTAGGATTGGTTGATTAGTTTAACAATATTATTAGTTATTG
ACTTACAATTTATTATATTACAGAGCTCAACAAACAAGACATGACTTCAC
GTATACTAAAACACTTGACAAGACAATGACATAGACAGTTCAAAAAACTG
ACGACGGAAATTTTTCTTTTCAAATATGAATGATTGAACTTCTACGCTAA
TTAAATCCTACGTCGTTTACAATTTCACGGGTCCCGGTTGCGCTGTTTCT
TACATAAGATTATCGAAACAAACATTATTTCAACGTTAAAAAGAGCACGC
AACTTGTGAGGAATCTGCGATTCGATCCCATCCNGCCACTGCACGCAGCT
TGTGAGGAATCTGCCCGGAATCTGCGATTCAATCCCATCTCGATAATTGC
TTGAATCGTGTGCATTTATTTTCACTTAACTATGTTTATGAAAGATGTTG
TCCCTGATCATTTCAGGTTGAATTTAGTTCGTAACAACATGTTAGTGATC
GGCACTGCGAACTGTTACACAATAGAATTTGAAGAAGCATATTTTATAAA
AGAAAAGTAACCATTGCTTAACAATGAAATCAAGGCCGCTAAAAAGTCAA
CGACGTGATTTTATTTCCTTTGTATAATCTTTTGTATAAGTTATTTATAA
GTTTTTATTCCCAAATGTATTTAATATCTTTTAGCAATATACCAATTTAT
CTTCATCAGGTAGCTTGTAGAATTTCAGTTTTTAATGTTGTGGTAAAGGC
TATCGAAATATCATCGTGCCATTATTTTCTGACTTAATTTTCAAATTTTA
AAGATGCACCTATTCGGGATTCGTTTTCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016704XLOC_016704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029305-exon-sc0000736-1575043694:40211..40446TCONS_00029305-exon-sc0000736-1575043694:40211..40446Clytia hemisphaericaexon
TCONS_00029305-exon-sc0000736-1575043694:39165..39923TCONS_00029305-exon-sc0000736-1575043694:39165..39923Clytia hemisphaericaexon
TCONS_00029305-exon-sc0000736-1510915933:40211..40446TCONS_00029305-exon-sc0000736-1510915933:40211..40446Clytia hemisphaericaexon
TCONS_00029305-exon-sc0000736-1510915933:39165..39923TCONS_00029305-exon-sc0000736-1510915933:39165..39923Clytia hemisphaericaexon
TCONS_00029305-exon-sc0000736-1491911889:40211..40446TCONS_00029305-exon-sc0000736-1491911889:40211..40446Clytia hemisphaericaexon
TCONS_00029305-exon-sc0000736-1491911889:39165..39923TCONS_00029305-exon-sc0000736-1491911889:39165..39923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000736supercontigsc0000736:39165..40446 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.677056	0.660236	0.255533	0.199999	8.09569	4.76192	5.19503	5.21547	2.53696	3.84324	2.80263	2.45825	3.38097	2.49284	2.75674	1.7884	4.22021	2.98161	0.847271	2.52334	4.67927	4.08333	1.39579	1.60693	0.823849	1.64353	1.78444	1.04593	0.651282	0.914458
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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