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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029351 ID=TCONS_00029351|Name=TCONS_00029351|organism=Clytia hemisphaerica|type=transcript|length=2303bp
TCACTTTGGATTGGCTactttgctttcaaagtttgtaTTTTGCTTCGCCT
TCAATATGGCTGCCACCACCgtctatagaccttttcgccatTGATGACAT
TTTATATGCTAGTAGCCATTTTTAGCCCGTTTCATCTTTCatatttcaaa
tcttttattttagaaattacaAAAACAAATTTACGTTGCAAATCTTCAAA
TAATGGGTAAACCATATGATGGATCAAGTCTTGATGATAACCATTCTTTA
TGGGAAGAAATCGATAACCAGACGAATGCAGTGTTGGATAATATTATAAT
ACAGTGGTGTGGCAGAGGGTATTTTCTTCTGTGTGTCATTCCGGTTACAA
CAAGATAATATAACAATCGTTCGATTCTTTGAGCATGGTTCTTACAAAGG
TGCGATGAAAAGtACGATGCAAGAGACCATTAACACTATGATCGAAGACG
AAAACTCGCATTACATTGAAGTCTACAACTACATCGACCATGATGTGGAG
AACAAATTAAAACGGGAATCTCTACTCAAAATGAAGAAAGGTGAAAAGAC
GAATATCGTTTCTAGACGTTTCCTTCGACTAAAATGACAGAGTTATAACA
ACTTCGACGAACTTTAACAGTCCGTGATACGTAATTTCTTTCATCTTACA
GCAAGTTGTTAGTCTTTTTGTAGATGGTGGCTTTCATTTTTCGGGActta
tgatatttttgaaatgtaCAATATTTACGACTTCCAACCCTGACCATAAC
TAAAATAACGAGTCTCGGTAATTttctagttggtgagttgggGAGGTGGG
TAGTTGcaagtttcgagttggggagttgctataAAATTACGGCAACCGAA
AACTATAGAGTTAAATTCATGTAgttcaaaagtacaaatttcaaataagC
CAGTACCAACCATATTATTGGCCTTTAAGATCCTGAAAATAgtaaggtgc
tggctagcaaagccaaaataatTAGTATTTCTGAAAATGTCATTGTCATA
ATGCTGACATGACActttcttgtaaaaatattgacaaaatctttaaatat
aaTGATTATCAAGGAAATTCCCCGAAAAATATTAATCATACaggatataa
gttgacagtcatTTTAGCCTTATAAAGTACGTAGAGTTAGCATATAGAGC
TAGAAAAACAATGAcgctttcttttgtcattttatcattttatcattagg
attgacactttttataaaaattttgatgaaactataaataaatggatatg
aattgacagtagaaaatagctttcgATGCTCTCAACGCACGTGTTTCAGG
GAAATGAGCATATAACGTGTTATATGTATTATACGTCttacatatattat
atattactctcatattacatttactttcaaaatatacttttgatgtatgt
tactctttttcggtagccggtaatttttcaactccccaactcgcgactag
aatagtttccaaactcATAAATAACCTATCCTAACTCGAACAACAAATCT
AATTTGTTGGAACTACAGAGTTTGCTATATAATCtattttcagaatcttc
aaatattcaatgttttttttgtttttataaaactttcGGAATTCAAAAGT
TAATGGCCAGATCACAAACACTGTATGCAAGTACTCCAAGTAAAAAAGTC
ATGGAAAATTGATTTCGTATAGACTTCACAGCATAGTTCCTAGGGGAGTA
CTTTTTTCTGTAGGGGGTACATATTTCCTAGGAGAAATGTACTTCCGGGA
GTACTTTTATCCTAGGAAATAAGTATTGGGGAGTACTTAAAGCCATATTG
ACATTACTTTTTCCCGATGTCTGAATTGCTCCTTCAAAAACGCTGAGCTT
GCACAAACGAGGCATTTCTCCgaccaatcatcaaaacaaaaaagcgCGCT
TAACGTCAGTTAATTGATCGATTCGACACTACAATGTCTTCTTTATGATA
AAAGATTTTGACGACCAGATTGTTTGCAatgttttgacttcaaaatgttg
tacaagaattggaatgaaCCGTCTGCGTTTTTAATGGAGTTTTGCAATGC
TTTTGCAGAATAAGCAAACAGATCTATGGACAGATATACTGGCTTCAAAT
CTGGGAAATAAGTATTGGGGAGTACTTTTTTTCGGGGAGTACTTTTTTCC
TGTGACACCGGAActcgtaaaaatatttttcgtatcATGGTCGGAACCAT
gagataactattacatattctGTTCTGTTCTGTTctataatctcatggtt
gattgaaattcgattgacgtttttgcttacgttaatttgtaatttcccgc
gNN Run BLAST on NCBI transcript from alignment at sc0000744:19231..22115+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029351 ID=TCONS_00029351|Name=TCONS_00029351|organism=Clytia hemisphaerica|type=transcript|length=2885bp|location=Sequence derived from alignment at sc0000744:19231..22115+ (Clytia hemisphaerica)
TCACTTTGGATTGGCTactttgctttcaaagtttgtaTTTTGCTTCGCCT
TCAATATGGCTGCCACCACCgtctatagaccttttcgccatTGATGACAT
TTTATATGCTAGTAGCCATTTTTAGCCCGTTTCATCTTTCatatttcaaa
tcttttattttagaaattacaAAAACAAATTTACGTTGCAAATCTTCAAA
TAATGGGTAAACCATATGATGGATCAAGTCTTGATGATAACCATTCTTTA
TGGGAAGGTATATTTTGCCAGCTTTTGTATCTATTTTCATTAATTTGTAC
CTTCCTTGAAACTTATACCCTGTCTTGTTTTAAAAGTTAAACTATTTATT
GAAGATTCTTTAATTATATTTTCAGAAATCGATAACCAGACGAATGCAGT
GTTGGATAATATTATAATACAGTGGTGTGGCAGAGGGTATTTTCTTCTGT
GTGTCATTCCGGTTACAACAAGATAATATAACAATCGTTCGATTCTTTGA
GCATGGTTCTTACAAAGGTGCGATGAAAAGGTAAATATAGTGCGTTCATT
CTAACTTGGTTGATGTCTTTTTTAAAAACACTCAATTGTTTTCGatggtt
gaaagaaaagaattCCACTTGAAAGTCATTAACGATTAACCAAGTTAGAG
TGAACGCATTATAACGTTTTATTTAAATTCGATTTTTGTCGTCAGTGATA
ACTTGTGGCATGATAAATacatcttttatttttatatctttattcACAGA
ATTATATTCTGTTTATTAGGGGAGATTTCTTTCTCGTATTGAATATTACT
CATTAGTGTTCACAAAATGATCTGTAGGCAACGTATGCTAGACGACTTAT
TTCAGAAGAAAATAGGACGTCGAAAATAGCATCAGTATCTTgacaaacaa
aaatgaaattttttggcTTTCAATAAAAGCACTTTAAATAAACGACGTAG
CAAGAACTTTAACATCGATGACGTCtcatttttcacattttcagtACGAT
GCAAGAGACCATTAACACTATGATCGAAGACGAAAACTCGCATTACATTG
AAGTCTACAACTACATCGACCATGATGTGGAGAACAAATTAAAACGGGAA
TCTCTACTCAAAATGAAGAAAGGTGAAAAGACGAATATCGTTTCTAGACG
TTTCCTTCGACTAAAATGACAGAGTTATAACAACTTCGACGAACTTTAAC
AGTCCGTGATACGTAATTTCTTTCATCTTACAGCAAGTTGTTAGTCTTTT
TGTAGATGGTGGCTTTCATTTTTCGGGActtatgatatttttgaaatgta
CAATATTTACGACTTCCAACCCTGACCATAACTAAAATAACGAGTCTCGG
TAATTttctagttggtgagttgggGAGGTGGGTAGTTGcaagtttcgagt
tggggagttgctataAAATTACGGCAACCGAAAACTATAGAGTTAAATTC
ATGTAgttcaaaagtacaaatttcaaataagCCAGTACCAACCATATTAT
TGGCCTTTAAGATCCTGAAAATAgtaaggtgctggctagcaaagccaaaa
taatTAGTATTTCTGAAAATGTCATTGTCATAATGCTGACATGACActtt
cttgtaaaaatattgacaaaatctttaaatataaTGATTATCAAGGAAAT
TCCCCGAAAAATATTAATCATACaggatataagttgacagtcatTTTAGC
CTTATAAAGTACGTAGAGTTAGCATATAGAGCTAGAAAAACAATGAcgct
ttcttttgtcattttatcattttatcattaggattgacactttttataaa
aattttgatgaaactataaataaatggatatgaattgacagtagaaaata
gctttcgATGCTCTCAACGCACGTGTTTCAGGGAAATGAGCATATAACGT
GTTATATGTATTATACGTCttacatatattatatattactctcatattac
atttactttcaaaatatacttttgatgtatgttactctttttcggtagcc
ggtaatttttcaactccccaactcgcgactagaatagtttccaaactcAT
AAATAACCTATCCTAACTCGAACAACAAATCTAATTTGTTGGAACTACAG
AGTTTGCTATATAATCtattttcagaatcttcaaatattcaatgtttttt
ttgtttttataaaactttcGGAATTCAAAAGTTAATGGCCAGATCACAAA
CACTGTATGCAAGTACTCCAAGTAAAAAAGTCATGGAAAATTGATTTCGT
ATAGACTTCACAGCATAGTTCCTAGGGGAGTACTTTTTTCTGTAGGGGGT
ACATATTTCCTAGGAGAAATGTACTTCCGGGAGTACTTTTATCCTAGGAA
ATAAGTATTGGGGAGTACTTAAAGCCATATTGACATTACTTTTTCCCGAT
GTCTGAATTGCTCCTTCAAAAACGCTGAGCTTGCACAAACGAGGCATTTC
TCCgaccaatcatcaaaacaaaaaagcgCGCTTAACGTCAGTTAATTGAT
CGATTCGACACTACAATGTCTTCTTTATGATAAAAGATTTTGACGACCAG
ATTGTTTGCAatgttttgacttcaaaatgttgtacaagaattggaatgaa
CCGTCTGCGTTTTTAATGGAGTTTTGCAATGCTTTTGCAGAATAAGCAAA
CAGATCTATGGACAGATATACTGGCTTCAAATCTGGGAAATAAGTATTGG
GGAGTACTTTTTTTCGGGGAGTACTTTTTTCCTGTGACACCGGAActcgt
aaaaatatttttcgtatcATGGTCGGAACCATgagataactattacatat
tctGTTCTGTTCTGTTctataatctcatggttgattgaaattcgattgac
gtttttgcttacgttaatttgtaatttcccgcgNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029351-exon-sc0000744-1491911889:19231..19487 | TCONS_00029351-exon-sc0000744-1491911889:19231..19487 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1510915933:19231..19487 | TCONS_00029351-exon-sc0000744-1510915933:19231..19487 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1575043694:19231..19487 | TCONS_00029351-exon-sc0000744-1575043694:19231..19487 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1491911889:19606..19760 | TCONS_00029351-exon-sc0000744-1491911889:19606..19760 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1510915933:19606..19760 | TCONS_00029351-exon-sc0000744-1510915933:19606..19760 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1575043694:19606..19760 | TCONS_00029351-exon-sc0000744-1575043694:19606..19760 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1491911889:20225..22115 | TCONS_00029351-exon-sc0000744-1491911889:20225..22115 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1510915933:20225..22115 | TCONS_00029351-exon-sc0000744-1510915933:20225..22115 | Clytia hemisphaerica | exon |
| TCONS_00029351-exon-sc0000744-1575043694:20225..22115 | TCONS_00029351-exon-sc0000744-1575043694:20225..22115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:19231..22115 + |
Blast
The following BLAST results are available for this feature:
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