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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029357 ID=TCONS_00029357|Name=TCONS_00029357|organism=Clytia hemisphaerica|type=transcript|length=1339bp
CCCGATTCGATTTGTAcgtgttttaaaaataaatttcgagtTAGGTggta
aaaaggaaaaatgacaaaaaaaaacaaccttttttcCTCAGTATCAAAAG
AGTTGTCAAAGCAAAGTGTGAGACGGAAGACATAAATCTCGATATTTTGG
TGAATCAGGCAGATTTTTGAGACGAAAATACGTCTCAATATACTTTAGAC
TTTAGaaaggaagaattttttaaCACTCCTACAAGTAGCCACAAAACAGC
TACCTTTACCATCGGAATATGTTCGATAGAAAGTGTATTTGGATGTTTCT
ATTCAGTTCAGCAATTATAGTTTGCTTCAGTGCCGAGGAAATTAATGGTT
CGAAAGTGTTTAATCTTGCTGCGTTAGACAAGAGTATCAAAGGTATCCCT
TATCACGCGACAACAGCACATTACAGACAATGCTTCAGTATTTGTTCTCT
CAATCCTAAATGTCTTTCTTTCGACCATTCCTACACATTTGAGATAGGTG
AATGTAGTTTTTACGATATTGGTTTACCTGTACTTAACCAAACAAATAAA
TTGATGGAGAAGACAGGCTTCAATTACTACACCATCCCGATCATTGCAAC
TGATTGTATTGACTGGTACAGGATGGGCCATCGCGAGGACGGTGTCTATG
AAGTCTATTTGCTGGCCAAGTACAAACGTCGCGTTTATTGTCTTATGACT
GGATCTGGAGGTGGCTGGATGGCCTTTCAGCGCAGATTCGATGGAAGTGT
ACAGTTTTTCGGTCGAAATTgggaagatttcaaaaatggtttcgGCGATT
CTGATGGTGAATATTACCTTGGTAACGAGTTATTGCATTTATTGACAACT
TCCGAAAGTCATGACTACATGGTACAAGCACACGCCAAAGATGGGAGTCG
AAAACGAAAAAATATCCACAACGTCCGCATTGAAAGCGAAGAGGAGAATT
ACAAGATCGAATACCGTGAAGAAGATATTGATAGCgccTCTGGTAGCGGT
ACCAATTATGGACTTGTTATGAGAGGTCAAGACTTCTTAACTTTTGATCA
TGACCGATATGACTGTGCTCAAAGATATGGGGGATGGTGGCATAAAAAGT
GCCatgctgtcgctatgaatggaAACTATATATCGACAAATCACGCTAAC
GGTATTATGTGGGGTGGTTGGAAAGGACATGGTGAGTCACTACAAAGTTG
TTTGTTGATGGTACGACGTTCTTCTTTTCATCATTGAATACAAAATTTCC
CTATTGGcagtttcatgtaaaaaagtcacaaaaaacgTAGAGTaaaagct
ctgattggctaaaGGTTGCGCAATTAAACATATGCCCAA Run BLAST on NCBI protein sequence of TCONS_00029357-protein >TCONS_00029357-protein ID=TCONS_00029357-protein|Name=TCONS_00029357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MFDRKCIWMFLFSSAIIVCFSAEEINGSKVFNLAALDKSIKGIPYHATTA
HYRQCFSICSLNPKCLSFDHSYTFEIGECSFYDIGLPVLNQTNKLMEKTG
FNYYTIPIIATDCIDWYRMGHREDGVYEVYLLAKYKRRVYCLMTGSGGGW
MAFQRRFDGSVQFFGRNWEDFKNGFGDSDGEYYLGNELLHLLTTSESHDY
MVQAHAKDGSRKRKNIHNVRIESEEENYKIEYREEDIDSASGSGTNYGLV
MRGQDFLTFDHDRYDCAQRYGGWWHKKCHAVAMNGNYISTNHANGIMWGG
WKGHGESLQSCLLMVRRSSFHH Run BLAST on NCBI transcript from alignment at sc0000744:89001..91463+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029357 ID=TCONS_00029357|Name=TCONS_00029357|organism=Clytia hemisphaerica|type=transcript|length=2463bp|location=Sequence derived from alignment at sc0000744:89001..91463+ (Clytia hemisphaerica)
CCCGATTCGATTTGTAcgtgttttaaaaataaatttcgagtTAGGTggta
aaaaggaaaaatgacaaaaaaaaacaaccttttttcCTCAGTATCAAAAG
AGTTGTCAAAGCAAAGTGTGAGACGGAAGACATAAATCTCGATATTTTGG
TGAATCAGGCAGATTTTTGAGACGAAAATACGTCTCAATATACTTTAGAC
TTTAGaaaggaagaattttttaaCACTCCTACAAGTAGCCACAAAACAGC
TACCTTTACCATCGGAATATGTTCGATAGAAAGTGTATTTGGATGTTTCT
ATTCAGTTCAGCAATTATAGTTTGCTTCAGTGCCGAGGAAATTAATGGTT
CGAAAGTGTTTAATCTTGCTGCGTTAGACAAGAGTATCAAAGGTATCCCT
TATCACGCGACAACAGCACATTACAGACAATGCTTCAGTATTTGTTCTCT
CAATCCTAAATGTCTTTCTTTCGACCATTCCTACACATTTGAGATAGGTG
AATGTAGTTTTTACGATATTGGTTTACCTGTACTTAACCAAACAAATAAA
TTGATGGAGAAGACAGGCTTCAATTACTACACCATCCCGATCATTGCAAC
TGATTGTATTGACTGGTACAGGATGGGCCATCGCGAGGACGGTGTCTATG
AAGTCTATTTGCTGGCCAAGTACAAACGTCGCGTTTATTGTCTTATGACT
GGATCTGGAGGTGGCTGGATGGCCTTTCAGCGCAGATTCGATGGTAAGAT
TTGTTTTGGCAAGTTAACGCAACTTGCAACCTTCTATAGTTTCTAGACAT
ATTCAACCAAGCAAGGAAAtaggaaaaaagcaaagaaatacGGGAGGGAA
ATGGAGTAATGAGAATCTTCGACTTCTAATTTCTTCAGGAAGTGTACAGT
TTTTCGGTCGAAATTgggaagatttcaaaaatggtttcgGCGATTCTGAT
GGTGAATATTACCTTGGTAACGAGTTATTGCATTTATTGACAACTTCCGA
AAGTCATGACTACATGGTACAAGCACACGCCAAAGATGGGAGTCGAAAAC
GAAAAAATATCCACAACGTCCGCATTGAAAGCGAAGAGGAGAATTACAAG
ATCGAATACCGTGAAGAAGATATTGATAGCGTAAATATGAAAAGATCCTT
AATTTTACTTTCAAGTTATTAGATTCGTGGGCAAGCATACTGGCCTCTTA
TTGGTAACTCTCTTTGATGggagttttcttttgaaaggGGTATCCGCAAA
AGAAGTTAATACAATACCTACAAATTTGTCTTTCTTCAACCGGTGCAACC
TTTATATATctctggaccaagctatatccgccatctttgatcggaatttt
tttttgaattggtacccgtaaagaagccattacATTGTTCAAAATTTGTC
TAACGACAAAATGGCGCTACATCACATCACATGAGCAAGCAAAGTAGATC
TCGgtgcgggtaccactttcaagaaaactccgatcaaaatattttgcttg
gccggaaTTAATACCCCATTGAATATTGATATTGATTCCAGggtttattc
cttttttttcgaaaaaaagttttcacttgGTCTATCCTTAGTCGTAATAT
TGTTTACTATAAACTTTTACTAAGAATGTCTAGGTCTAGGAGTCGTCTCG
ATAGAACCGTTTAAGTAACGATTTATGTAACCTGTCAACTCACTGAATGC
AGTTTCAGGATTTTCCGGAAGTACAATTCAACTTAGTTTTATAGGTTTTT
CATGTCTtaaggccgctacccactcagcattttatggtcggcgaacaagg
cgcacggctcgggcgctttggtcgaaaatgctgagtgggtagcgacCTTT
ATATTACGTAACtttcgccattatggaagcaaacgttcggtTTGCGTAAA
GACCAGCCTCTCCAGATTCGAAtatttgcttccataatggcggaaattac
gtaacttaacaaaacataaaatcCTCTATGgaataaaacattaaaatttg
atttgacACGATCGCTTacgcaaatcgaatgttttcttcCACTATGTCGG
AAGTTAGTCAAATATCCTTCTGATCAAAATGTTAAAttgatcaaaataat
ttttttcaggccTCTGGTAGCGGTACCAATTATGGACTTGTTATGAGAGG
TCAAGACTTCTTAACTTTTGATCATGACCGATATGACTGTGCTCAAAGAT
ATGGGGGATGGTGGCATAAAAAGTGCCatgctgtcgctatgaatggaAAC
TATATATCGACAAATCACGCTAACGGTATTATGTGGGGTGGTTGGAAAGG
ACATGGTGAGTCACTACAAAGTTGTTTGTTGATGGTACGACGTTCTTCTT
TTCATCATTGAATACAAAATTTCCCTATTGGcagtttcatgtaaaaaagt
cacaaaaaacgTAGAGTaaaagctctgattggctaaaGGTTGCGCAATTA
AACATATGCCCAA Coding sequence (CDS) from alignment at sc0000744:89001..91463+ >TCONS_00029357 ID=TCONS_00029357|Name=TCONS_00029357|organism=Clytia hemisphaerica|type=CDS|length=2907bp|location=Sequence derived from alignment at sc0000744:89001..91463+ (Clytia hemisphaerica)
ATGTTCGATAGAAAGTGTATTTGGATGTTTCTATTCAGTTCAGCAATTAT
AGTTTGCTTCAGTGCCGAGGAAATTAATGGTTCGAAAGTGTTTAATCTTG
CTGCGTTAGACAAGAGTATCAAAGGTATCCCTTATCACGCGACAACAGCA
CATTACAGACAATGCTTCAGTATTTGTTCTCTCAATCCTAAATGTCTTTC
TTTCGACCATTCCTACACATTTGAGATAGGTGAATGTAGTTTTTACGATA
TTGGTTTACCTGTACTTAACCAAACAAATAAATTGATGGAGAAGACAGGC
TTCAATTACTACACCATCCCGATCATTGCAACTGATTGTATTGACTGGTA
CAGGATGGGCCATCGCGAGGACGGTGTCTATGAAGTCTATTTGCTGGCCA
AGTACAAACGTCGCGTTTATTGTCTTATGACTGGATCTGGAGGTGGCTGG
ATGGCCTTTCAGCGCAGATTCGATGGAAGTGTACAGTTTTTCGGTCGAAA
TTgggaagatttcaaaaatggtttcgGCGATTCTGATGGTGAATATTACC
TTGGTAACGAGTTATTGCATTTATTGACAACTTCCGAAAGTCATGACTAC
ATGGTACAAGCACACGCCAAAGATGGGAGTCGAAAACGAAAAAATATCCA
CAACGTCCGCATTGAAAGCGAAGAGGAGAATTACAAGATCGAATACCGTG
AAGAAGATATTGATAGCgccTCTGGTAGCGGTACCAATTATGGACTTGTT
ATGAGAGGTCAAGACTTCTTAACTTTTGATCATGACCGATATGACTGTGC
TCAAAGATATGGGGGATGGTGGCATAAAAAGTGCCatgctgtcgctatga
atggaAACTATATATCGACAAATCACGCTAACGGTATTATGTGGGGTGGT
TGGAAAGGACATGGTGAGTCACTACAAAGTTGTTTGTTGATGGTACGACG
TTCTTCTTTTCATCATTGAATGTTCGATAGAAAGTGTATTTGGATGTTTC
TATTCAGTTCAGCAATTATAGTTTGCTTCAGTGCCGAGGAAATTAATGGT
TCGAAAGTGTTTAATCTTGCTGCGTTAGACAAGAGTATCAAAGGTATCCC
TTATCACGCGACAACAGCACATTACAGACAATGCTTCAGTATTTGTTCTC
TCAATCCTAAATGTCTTTCTTTCGACCATTCCTACACATTTGAGATAGGT
GAATGTAGTTTTTACGATATTGGTTTACCTGTACTTAACCAAACAAATAA
ATTGATGGAGAAGACAGGCTTCAATTACTACACCATCCCGATCATTGCAA
CTGATTGTATTGACTGGTACAGGATGGGCCATCGCGAGGACGGTGTCTAT
GAAGTCTATTTGCTGGCCAAGTACAAACGTCGCGTTTATTGTCTTATGAC
TGGATCTGGAGGTGGCTGGATGGCCTTTCAGCGCAGATTCGATGGAAGTG
TACAGTTTTTCGGTCGAAATTgggaagatttcaaaaatggtttcgGCGAT
TCTGATGGTGAATATTACCTTGGTAACGAGTTATTGCATTTATTGACAAC
TTCCGAAAGTCATGACTACATGGTACAAGCACACGCCAAAGATGGGAGTC
GAAAACGAAAAAATATCCACAACGTCCGCATTGAAAGCGAAGAGGAGAAT
TACAAGATCGAATACCGTGAAGAAGATATTGATAGCgccTCTGGTAGCGG
TACCAATTATGGACTTGTTATGAGAGGTCAAGACTTCTTAACTTTTGATC
ATGACCGATATGACTGTGCTCAAAGATATGGGGGATGGTGGCATAAAAAG
TGCCatgctgtcgctatgaatggaAACTATATATCGACAAATCACGCTAA
CGGTATTATGTGGGGTGGTTGGAAAGGACATGGTGAGTCACTACAAAGTT
GTTTGTTGATGGTACGACGTTCTTCTTTTCATCATTGAATGTTCGATAGA
AAGTGTATTTGGATGTTTCTATTCAGTTCAGCAATTATAGTTTGCTTCAG
TGCCGAGGAAATTAATGGTTCGAAAGTGTTTAATCTTGCTGCGTTAGACA
AGAGTATCAAAGGTATCCCTTATCACGCGACAACAGCACATTACAGACAA
TGCTTCAGTATTTGTTCTCTCAATCCTAAATGTCTTTCTTTCGACCATTC
CTACACATTTGAGATAGGTGAATGTAGTTTTTACGATATTGGTTTACCTG
TACTTAACCAAACAAATAAATTGATGGAGAAGACAGGCTTCAATTACTAC
ACCATCCCGATCATTGCAACTGATTGTATTGACTGGTACAGGATGGGCCA
TCGCGAGGACGGTGTCTATGAAGTCTATTTGCTGGCCAAGTACAAACGTC
GCGTTTATTGTCTTATGACTGGATCTGGAGGTGGCTGGATGGCCTTTCAG
CGCAGATTCGATGGAAGTGTACAGTTTTTCGGTCGAAATTgggaagattt
caaaaatggtttcgGCGATTCTGATGGTGAATATTACCTTGGTAACGAGT
TATTGCATTTATTGACAACTTCCGAAAGTCATGACTACATGGTACAAGCA
CACGCCAAAGATGGGAGTCGAAAACGAAAAAATATCCACAACGTCCGCAT
TGAAAGCGAAGAGGAGAATTACAAGATCGAATACCGTGAAGAAGATATTG
ATAGCgccTCTGGTAGCGGTACCAATTATGGACTTGTTATGAGAGGTCAA
GACTTCTTAACTTTTGATCATGACCGATATGACTGTGCTCAAAGATATGG
GGGATGGTGGCATAAAAAGTGCCatgctgtcgctatgaatggaAACTATA
TATCGACAAATCACGCTAACGGTATTATGTGGGGTGGTTGGAAAGGACAT
GGTGAGTCACTACAAAGTTGTTTGTTGATGGTACGACGTTCTTCTTTTCA
TCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029357-exon-sc0000744-1491911889:89001..89743 | TCONS_00029357-exon-sc0000744-1491911889:89001..89743 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1510915933:89001..89743 | TCONS_00029357-exon-sc0000744-1510915933:89001..89743 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1575043694:89001..89743 | TCONS_00029357-exon-sc0000744-1575043694:89001..89743 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1491911889:89889..90130 | TCONS_00029357-exon-sc0000744-1491911889:89889..90130 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1510915933:89889..90130 | TCONS_00029357-exon-sc0000744-1510915933:89889..90130 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1575043694:89889..90130 | TCONS_00029357-exon-sc0000744-1575043694:89889..90130 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1491911889:91110..91463 | TCONS_00029357-exon-sc0000744-1491911889:91110..91463 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1510915933:91110..91463 | TCONS_00029357-exon-sc0000744-1510915933:91110..91463 | Clytia hemisphaerica | exon |
| TCONS_00029357-exon-sc0000744-1575043694:91110..91463 | TCONS_00029357-exon-sc0000744-1575043694:91110..91463 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:89001..91463 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00029357 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.267e-29 Identity = 77/220 (35.00%), Postives = 111/220 (50.45%), Query Frame = 2
Query: 602 DCIDWYRMGHREDGVYEVYLLAK-YKRRVYCLMTGSGGGWMAFQRRFDGSVQFFGRNWEDFKNGFGDSDGEYYLGNELLHLLTTSESHDYMVQAHAKDGSRKRKNIHNVXXXXXXXXXXXXXXXXDI----DSASGSGTNYGLVMRGQDFLTFDHDR----YDCAQ-RYGGWWHKKCHAVAMNGNYISTNH---ANGIMWGGWKGHGESLQSCLLMVRRS 1222
DC D Y G++ DGVY +Y V+C MT GG W FQ+RF+GSV FF R W D+K GFG +DGEY+LG + +HLLT + ++ V + + + I + + + + D +G +Y GQ F TFD D+ +CA G +W + CH +NG Y+ +H ANGI W WKG SL+ + +RR+
Sbjct: 40 DCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFF-RGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGAGDSLSY---HSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIRRA 255
The following BLAST results are available for this feature:
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