TCONS_00029361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029361
Unique NameTCONS_00029361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029361 ID=TCONS_00029361|Name=TCONS_00029361|organism=Clytia hemisphaerica|type=transcript|length=3000bp
AACTAACCCCAGGTATGCAGCAGGGCCGCGAAAGGACAGAAGAAATAATC
TTCTTTCAAAATACAGCTACTCATTTTGCCTTGGAAAGGACAATAAAAGA
CATAAATCTTCCTTAGTTCAAAATACATGTCCTTGAGAAGgacaaaagaa
aataataatgtATAAATGTAAGTAGTCttcaaaaaatactttaaatgtaa
gaaaatttcgcgattttccTGAAATGTCTGCAACAATAAAAGAGAATTAA
GCGCTATACCTCTTCTTGGAACTCTTCTTCATCGTCATCGTCGTCACTTg
ctgtattattattattgtcttCATGTTCTGTGTTATTAGCATCATTTGGA
CCTGTCTCATTCTCATCTACTGTTGCTCTCTCTAGCAAGCCAAGAATGGC
TTTATGATCTTTGCGGACATGGCGGTACAATGTATCATATTTAATGAATT
TACGAAAACAATCTTCAACAGGACACAAGCAAGTAAAGTTTTTATCTATT
CCATGGATAAGATTTAAATGACTTAAAAGACCCTTCAATGAAGTGCTTAA
GAAGTGCTTGCATAGTTCACATTGCCACATCTGTATCTTGATGATGTAAA
ATAAAACCTGCTCTGAATTGAAGAGTTTTTATCTATGTCCTGCAAACATT
TTTTCATTCACATAATATACAAGTCTCTGGAAATTATAACTGGAGTTAAA
AATCTCGATACTTACACCTCGTACCAATACAGTGACACCAACATCGATTG
GAACAATAACATAATAATTTATGACAGCACAGCGGCATAAGTATTCGTTC
TGCCTGTCTGCTGGCCAGATTTTACAGTCCAAAAACGCTGCCCTGTTTGA
ATCAAAGCTCCGGCTGCCATTATGATCGAATAGTCTCCTTCCTAGAGGAT
TTTCGTATTTTCCGCAAATATCTAAACCATGTGAAATCGAAAGAACGAAG
GAGAGCGATTTCAGCGGTTTTGAATGAAATAAAGATCAAGAGACTCAGCG
GTTTGGCGCTCAAACCAAGATGGCGAAGAAAGAAGAGGAGAAAATGGAAT
ATGATCACTGAAGTTTGGTGGATTTCCTTGAATGATAATCATTTGTGTTC
TTCAAAGATaagtttaatttcttttttactcTTTGATCATCGATTCTGTA
TCATTTTCTGTAATTTTCTGACCTTGATTCTCCTAGAAAACCTCTATCTA
AGTTTTATCCATTTCTTATAAAAGTGGTCAGCAGTGGTTCAAGACagcca
aaactttatttttacctaatttatttcatgaaaatggCGGGAAAAATGCT
ATAAAACCTGCTTGTAGCCACCACATTTCCTTttccatttcatttttcaa
catAAGATTTTAAGTACAACTTAACTTCAACTagatatttgagatatttt
gataattttgttcACAAAACTCTACACGTCTCTACACATATTCATATCAT
TCAACTTTTTAACTGTCAGTGTCAAATTGGTGAGTTTTTTCTTATACTAA
TGTACCATCATCAAGCATTTTACCTTTAAATCAAGAcagttttttcttga
aaagtgatgccattttggatttttcggtctcaaaatcaaaagatgaatta
atttcaggtttttttattgtaattttttaatttttacgcGGTGGAAGCCT
GgagaatatcatgaattatttgCGTTTGCACACTTCAACGACaagggatt
tttcaaagaaagataGATTTTTCACACGCAAGACACCCAAAAATACTCAT
GTTTTGTCTTTGAGATTCCTCTAAACAAGATCCCATAAGCCAAAAGAGTT
CCTATAATATAAGGTATCTGATGGTATCTGAAAGTTTGTAACACTTATCC
ATTTCCTTCCTCAGGATTATCTTTTATCATGGCTTCTAACAACGTCTTTG
GGTGTATCGAAAATGTCTCAAAGGACCTTAGTAAGACAATTAACGGTAAC
GAGACTCGATCAGAAAGATCTCACAAGAACAGAGAGGAAAGGaaaaagag
aaagattcgaaaggcTATCCGAAAAGCAGAGGATGAGGAAGCCAAAACTG
CAAGAATTGAGTATTTAGAAAGGGCAGCTGCTGCATATTTTGAGGTGAAG
GCTGAGAATGAGGTACTAAAGGAAGAAAACAAGAAATTGCTCAGGCAACT
GACTGTCAGGAAATTTGTTCAAACTAGAGGATTTGATACCGCAAAGTGCA
GTGAAGCTCATAAAGAATTCCTGGCTTCAAAACTACCCACCGTTATGACT
TTATCCTCAAGTTTGGTTAGTGTTAAAAGAACACAGTTTGCATCTGGCGC
CTTCGGCTCTATTCATGTTGGACAGCTTACCAATTTGAACATTGATGTAG
CAGTAAAAAAGAGCAAGGGATCCAGTCTGGAAGTGGAGGCACGTGTTTGC
CAAGCTCTTTCTGGctctaaatattttttgcatttctttGGAATTTGCGA
TAATATGATAGTGACTGAGTTGATCCAAATATTCATAAAATCTGAGCAGA
AAAAATTCAGCAGTACTCTTGAACTTTTTTTGTCTACTGCTATACCAAAT
GTCAACTGGCTCAGCATTTCTTCTGGAATAGTAACAGGTGTTCTTGAAAT
GCATAGCCAGAACATTCTCCATAACGACTTAAAACCTGATAAAGTCTTGA
TCGATGAGAACTTTGTTcccaaaatttgtgattttgggaaAGCAACGCAC
ACTAACAGGCCATTGGTTTATAACTTGACTGATAAACAGAAAAAGATATA
TAATGAGAAACATCGCCACTTAGCTTATGAGCTGAGAAATTTAGATGGTT
TTACGCAATCTTTTAAAACTGATGCTTATTCGGTTGGTAGAATATTACAG
GAGATTGCAGTCAATTTTAATAATGAGAGTGTCTCTACTGCATGGAAATT
GCTTAAAGTTAATGAACCCGATGAACGATCTTCTTTAGGAGAAATACACA
TATTTTAGATTATATGCATTGTGTTTAAATTTGAATGCATAATTTATGAA
Run BLAST on NCBI

transcript from alignment at sc0000744:41135..46452-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029361 ID=TCONS_00029361|Name=TCONS_00029361|organism=Clytia hemisphaerica|type=transcript|length=5318bp|location=Sequence derived from alignment at sc0000744:41135..46452- (Clytia hemisphaerica)
AACTAACCCCAGGTATGCAGCAGGGCCGCGAAAGGACAGAAGAAATAATC
TTCTTTCAAAATACAGCTACTCATTTTGCCTTGGAAAGGACAATAAAAGA
CATAAATCTTCCTTAGTTCAAAATACATGTCCTTGAGAAGGACAAAAGAA
AATAATAATGTATAAATGTAAGTAGTCTTCAAAAAATACTTTAAATGTAA
GAAAATTTCGCGATTTTCCTGAAATGTCTGCAACAATAAAAGAGAATTAA
GCGCTATACCTCTTCTTGGAACTCTTCTTCATCGTCATCGTCGTCACTTG
CTGTATTATTATTATTGTCTTCATGTTCTGTGTTATTAGCATCATTTGGA
CCTGTCTCATTCTCATCTACTGTTGCTCTCTCTAGCAAGCCAAGAATGGC
TTTATGATCTTTGCGGACATGGCGGTACAATGTATCATATTTAATGAATT
TACGAAAACAATCTTCAACAGGACACAAGCAAGTAAAGTTTTTATCTATT
CCATGGATAAGATTTAAATGACTTAAAAGACCCTTCAATGAAGTGCTTAA
GAAGTGCTTGCATAGTTCACATTGCCACATCTGTATCTTGATGATGTAAA
ATAAAACCTGCTCTGAATTGAAGAGTTTTTATCTATGTCCTGCAAACATT
TTTTCATTCACATAATATACAAGTCTCTGGAAATTATAACTGGAGTTAAA
AATCTCGATACTTACACCTCGTACCAATACAGTGACACCAACATCGATTG
GAACAATAACATAATAATTTATGACAGCACAGCGGCATAAGTATTCGTTC
TGCCTGTCTGCTGGCCAGATTTTACAGTCCAAAAACGCTGCCCTGTTTGA
ATCAAAGCTCCGGCTGCCATTATGATCGAATAGTCTCCTTCCTAGAGGAT
TTTCGTATTTTCCGCAAATATCTAAACCATGTGAAATCGAAAGAACGAAG
GAGAGCGATTTCAGCGGTTTTGAATGAAATAAAGATCAAGAGACTCAGCG
GTTTGGCGCTCAAACCAAGATGGCGAAGAAAGAAGAGGAGAAAATGGAAT
ATGATCACTGAAGTTTGGTGGATTTCCTTGAATGATAATCATTTGTGTTC
TTCAAAGATAAGTTTAATTTCTTTTTTACTCTTTGATCATCGATTCTGTA
TCATTTTCTGTAATTTTCTGACCTTGATTCTCCTAGAAAACCTCTATCTA
AGTTTTATCCATTTCTTATAAAAGTGGTCAGCAGTGGTTCAAGACAGCCA
AAACTTTATTTTTACCTAATTTATTTCATGAAAATGGCGGGAAAAATGCT
ATAAAACCTGCTTGTAGCCACCACATTTCCTTTTCCATTTCATTTTTCAA
CATAAGATTTTAAGTACAACTTAACTTCAACTAGATATTTGAGATATTTT
GATAATTTTGTTCACAAAACTCTACACGTCTCTACACATATTCATATCAT
TCAACTTTTTAACTGTCAGTGTCAAATTGGTGAGTTTTTTCTTATACTAA
TGTACCATCATCAAGCATTTTACCTTTAAATCAAGACAGTTTTTTCTTGA
AAAGTGATGCCATTTTGGATTTTTCGGTCTCAAAATCAAAAGATGAATTA
ATTTCAGGTTTTTTTATTGTAANTGCCATTTTGGATTTTCGGTCTCAAAA
TCAAAATATGAATTTTTCAGGTTTTTTTATTGTAATTTTTTAATTTTTAC
GCGGTGGAAGCCTGGAGAATATCATGAATTATTTGCGTTTGCACACTTCA
ACGACAAGGGATTTTTCAAAGAAAGATAGATTTTTCACACGCAAGACACC
CAAAAATACTCATGTTTTGTCTTTGAGATTCCTCTAAACAAGATCCCATA
AGCCAAAAGAGTTCCTATAATATAAGGTATCTGATGGTATCTGAAAGTTT
GTAACACTTATCCATTTCCTTCCTCAGGATTATCTTTTATCATGGCTTCT
AACAACGTCTTTGGGTGTATCGAAAATGTCTCAAAGGACCTTAGTAAGAC
AATTAACGGTAAGTTTAGATACGTTTATTTTTGTTTCATAGTTTCATCCT
ATCTTTTTAGGGGGGATAAGAGGGGATAATTTATGAAGGCTCGGCTCTCA
GGAAAATTTTTTAGCTGGACAGATGATTTTTCTAGGCACTTTTTTTCTGT
CTTGTATATTGTATACTGGCCAAAATACTCATTTTACAGTACTGGATTGA
GTTATATAATTCATTCAAAAAAAAAAAATCTTTTTTCTAAAAGATTTCAC
TTGAATTTATCCAGCAATAGTGTCAGCCTGTCACCCAATAGTGTTTATTC
CCCCCCTGAGTTTTCAATTTTCATGAATTTTTTGGTAGCCCCCAGGACTT
TCAACCCTCGACACTTTCCAAAAATTGTTTCCAGGAAAAAAGGGTTATTC
AAATGTAAATTGTGTTGCAGTTCCAAGCTTCAGATAAAATATTTTTCAGC
TTTATGAGCTTTTAATTTAAATATTTGAAGCCAAATTCATGCTAAGTGTA
AGTGTGAGATTTCTATAAAAAACAATGAAGTAATCAGACTTGTTACATGT
TACTTTGATTGGATTAAATTTTGTAAGCAAAAAAATAGCAAAATTTTCTG
GATTTAATTTCGCGAGTCAGTGTTTTGAAGTGTTGGAAGCTGTTGTTTGT
NCAGCACGTCAATCTATTGGTTGTTTCACAGGAGGTTCAGTTTTCTGTTT
TGGCGATTGTTTGTGTTGGAAGCTGTCGTTTGTTTTTTATGTTCAATTGT
GAAATGCAGCTAGATGCTAAGATCATTGCGTCAGCTGCCGTGCTACCATT
ATGGAGCAGCACGTCAATCTATTGGTTGTTTCACAGGAGGTTCAGTTTTC
TGTTTTGGCGATTGTTTGTGTTGGAAGCTGTCGTTTGTTTTTTATGTTCA
ATTGTGAAATGCAGCTAGATGCTAAGATCATTGCGTCAGCTGCCGTGCTA
CCATTATGGAGCAGCACGTCAATCTATTGGTTGTTTCACAGGAGGTTCAG
TTTTCTGTTTTGGCGATTGTTTGTGTTGGAAGCTGTCGTTTGTTTTTTAT
GTTCAATTGTGAAATGCAGCTAGATGCTAAGATCATTGCGTCAGCTGCCG
TGCTACCATTATGGAGCAGCACGTCAATCTATTGGTTGTTTCACAGGAGG
TTCAGTTTTCTGTTTTGGCGATTGTTTGTGTTGGAAGCTGTCGTTTGTTT
TTTATGTTCAATTGTGAAATGCAGCTAGATGCTAAGATCATTGCGTCAGC
TGCCGTGCTACCATTATGGAGCAGCACGTCAATCTATTGGTTGTTTCACA
GGAGGTTCAGTTTTCTGTTTTGGCGATTGTTTGTGTTGGAAGCTGTCGTT
TGTTTTTTATGTTCAATTGTGAAATGCAGCTAGATGCTAAGATCATTGCG
TCAGCTGCCGTGCTACCATTATGGAGCAGCACGTCAATCTATTGGTTGTT
TCACAGGAGGTTCAGTTTTCTGTTTTGGCGATTGTTTGTGTTGGAAGCTG
TCGTTTGTTTTTTATGTTCAATTGTGAAATGCAGCTAGATGCTAAGATCA
TTGCGTCAGCTGCCGTGCTACCATTATGGAGCAGCACGTCAATCTATTGG
TTGTTTCACAGAAGGTTCAGTTTTCTGATTTGTTATTGTTAGACTAGTAG
TGTTGGGAGCTTTTGTTTGTTTTAGTTCGATTGTCAAATCCATCTATATG
CTATATGCATTTTGTTAGCTGCCATGCATTCATTGCTGCTTCCAATCTCA
AGTTTTGAATAGACTTTACATGTTTTCAGAATACCCTCATTTGATTATAA
AACTGTTTGTTTTCTGGTCAAGATTTAGGTTAACTTAGGAATGGGTTAAG
GTATGGATGTGAATATTTTTCAGACCAAAGTCATTTAGTCCTCTGTATTG
TGAATGTACATGGACTAGTCACATGGGCATTTTAATTGAGTACACTTTAT
TTATTAACAACTCCAATTTTCAGGGCAGGTCTGGAGTTGCTAAGCATTTT
TCTAAATCAAGGCCCAAAGTTGTTTAAGGTGGCTTAATATTTTTCAAGCT
TAAAATGAGCAAAAACACATAGCATTTTTCAATAGTTTTTTAAATTTTAC
ATAGACAGTGTAGGCATCTTTTGAGGATTTACAAGGTTTTCTTGTAGTTG
TGTCAAAGTTGAATAAAGAGTTGCTAACTTGGATTTGAGGCCTCAGGGTT
GCTAAGCAAGTTGCTTATTTTTTGTTGCTTATATTTTTCAGTTTCTTAAA
TTATGTTTTGTAGGTAACGAGACTCGATCAGAAAGATCTCACAAGAACAG
AGAGGAAAGGAAAAAGAGAAAGATTCGAAAGGCTATCCGAAAAGCAGAGG
ATGAGGAAGCCAAAACTGCAAGAATTGAGTATTTAGAAAGGGCAGCTGCT
GCATATTTTGAGGTGAAGGCTGAGAATGAGGTACTAAAGGAAGAAAACAA
GAAATTGCTCAGGCAACTGACTGTCAGGAAATTTGTTCAAACTAGAGGAT
TTGATACCGCAAAGTGCAGTGAAGCTCATAAAGAATTCCTGGCTTCAAAA
CTACCCACCGTTATGACTTTATCCTCAAGTTTGGTTAGTGTTAAAAGAAC
ACAGTTTGCATCTGGCGCCTTCGGCTCTATTCATGTTGGACAGCTTACCA
ATTTGAACATTGATGTAGCAGTAAAAAAGAGCAAGGGATCCAGTCTGGAA
GTGGAGGCACGTGTTTGCCAAGCTCTTTCTGGCTCTAAATATTTTTTGCA
TTTCTTTGGAATTTGCGATAATATGATAGTGACTGAGTTGATCCAAATAT
TCATAAAATCTGAGCAGAAAAAATTCAGCAGTACTCTTGAACTTTTTTTG
TCTACTGCTATACCAAATGTCAACTGGCTCAGCATTTCTTCTGGAATAGT
AACAGGTGTTCTTGAAATGCATAGCCAGAACATTCTCCATAACGACTTAA
AACCTGATAAAGTCTTGATCGATGAGAACTTTGTTCCCAAAATTTGTGAT
TTTGGGAAAGCAACGCACACTAACAGGCCATTGGTTTATAACTTGACTGA
TAAACAGAAAAAGATATATAATGAGAAACATCGCCACTTAGCTTATGAGC
TGAGAAATTTAGATGGTTTTACGCAATCTTTTAAAACTGATGCTTATTCG
GTTGGTAGAATATTACAGGAGATTGCAGTCAATTTTAATAATGAGAGTGT
CTCTACTGCATGGAAATTGCTTAAAGTTAATGAACCCGATGAACGATCTT
CTTTAGGAGAAATACACATATTTTAGATTATATGCATTGTGTTTAAATTT
GAATGCATAATTTATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016744XLOC_016744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029361-exon-sc0000744-1575043694:44846..46452TCONS_00029361-exon-sc0000744-1575043694:44846..46452Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1575043694:44445..44782TCONS_00029361-exon-sc0000744-1575043694:44445..44782Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1575043694:41135..42189TCONS_00029361-exon-sc0000744-1575043694:41135..42189Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1510915933:44846..46452TCONS_00029361-exon-sc0000744-1510915933:44846..46452Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1510915933:44445..44782TCONS_00029361-exon-sc0000744-1510915933:44445..44782Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1510915933:41135..42189TCONS_00029361-exon-sc0000744-1510915933:41135..42189Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1491911889:44846..46452TCONS_00029361-exon-sc0000744-1491911889:44846..46452Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1491911889:44445..44782TCONS_00029361-exon-sc0000744-1491911889:44445..44782Clytia hemisphaericaexon
TCONS_00029361-exon-sc0000744-1491911889:41135..42189TCONS_00029361-exon-sc0000744-1491911889:41135..42189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:41135..46452 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0974159	0.0999657	0.144722	0.328277	1.62914	1.58879	0.611081	1.16435	0.726521	0.48695	0.197108	0.429184	0.425717	0.503256	0.042437	0.0527102	0.0475515	0.0105147	0.0351436	0.0403658	0.0824417	0.0685476	0	0.0504118	2.47499	1.5831	0.022116	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top