TCONS_00029372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029372
Unique NameTCONS_00029372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029372 ID=TCONS_00029372|Name=TCONS_00029372|organism=Clytia hemisphaerica|type=transcript|length=488bp
CTCTAAGTTAAGTTGGCAGAAAGCACTCAattttctaaaagtttttgttt
cgcAGAGTTTGAATTATAAATTTCAGGAGCTTCACAATTCCTCCGAGGGA
AGCGAGGTTGGAAAGGAGTGCCACAGGCGaaatttttttcactgtttgtg
aagtatttttaatatttcgcGATGTTGTtaagaagaaaataagaaagtAT
CTTCTTTGCTACCTAGAAAAGCGAGGAATTGAAGACTTTTGTGTATAGAT
TGTAGATTAAACTAAATAAAGCAGTTGATAAACTAGGGAATAAAGTAAAG
CAAGTTTATTACTCAAttgataaacgagtgaataaagtagcgagtttata
aatcattagataaacgaatgaatgaacAGATGAATGAAGTAGCTGACTGT
CTTGTTGTCGGACTAGTGCCCATTGAATTTACCTAAATCCCAAAATAACT
TAAACTTGAACTAACTTTACTTTAATCTAAACTGTATA
Run BLAST on NCBI

transcript from alignment at sc0000744:15438..15925

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029372 ID=TCONS_00029372|Name=TCONS_00029372|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0000744:15438..15925 (Clytia hemisphaerica)
TATACAGTTTAGATTAAAGTAAAGTTAGTTCAAGTTTAAGTTATTTTGGG
ATTTAGGTAAATTCAATGGGCACTAGTCCGACAACAAGACAGTCAGCTAC
TTCATTCATCTgttcattcattcgtttatctaatgatttataaactcgct
actttattcactcgtttatcaaTTGAGTAATAAACTTGCTTTACTTTATT
CCCTAGTTTATCAACTGCTTTATTTAGTTTAATCTACAATCTATACACAA
AAGTCTTCAATTCCTCGCTTTTCTAGGTAGCAAAGAAGATactttcttat
tttcttcttaACAACATCgcgaaatattaaaaatacttcacaaacagtga
aaaaaatttCGCCTGTGGCACTCCTTTCCAACCTCGCTTCCCTCGGAGGA
ATTGTGAAGCTCCTGAAATTTATAATTCAAACTCTgcgaaacaaaaactt
ttagaaaatTGAGTGCTTTCTGCCAACTTAACTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016748XLOC_016748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029372-exon-sc0000744-1491911889:15438..15925TCONS_00029372-exon-sc0000744-1491911889:15438..15925Clytia hemisphaericaexon
TCONS_00029372-exon-sc0000744-1510915933:15438..15925TCONS_00029372-exon-sc0000744-1510915933:15438..15925Clytia hemisphaericaexon
TCONS_00029372-exon-sc0000744-1575043694:15438..15925TCONS_00029372-exon-sc0000744-1575043694:15438..15925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:15438..15925 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381481	0.430755	1.97605	1.24099	0.514449	0.135508	0	0.181118	0.140092	0	0	0.235544	0	0	0	0.20452	0	0.195684	0.135174	0	0.614729	0.415672	0.1458	0.132553	0.136526	0.289318	0	0.186084	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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