TCONS_00029395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029395
Unique NameTCONS_00029395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029395 ID=TCONS_00029395|Name=TCONS_00029395|organism=Clytia hemisphaerica|type=transcript|length=510bp
TGAAAGTTATGTAAAATATTATGTACTGAATAAAAAAGGGTATCCGTTAT
TTATTCGTGAGGAAACCTTGTAGGAGGATTGACGTGACTTCGAAGTCGTT
CATTTTTTGTAAGGTATGAAAAAGGATACCCTTATGGCTTGCACATACCT
CTCACCTGTTTTTCCAAAGTGCAATCCCTTCGGAGTATAATCTAGCTCGT
ACTAGACGATAATGGCTTGTTCTCCTGTACCGTTGTGTTTGTGAATTTTT
ACCTTTTTCCCCACCGGAAACCTTATAGGAGGATTGACTTGACTTTGAAA
TCATTATAGTATGAATAGGAAAGTGACGTAATTTCCATGAAAATACCATC
CCGTAAAATATCATAGACCAAAAAATagcttttcaattttcttttaatgg
TTGATGAAAACATACCGCCTTGTTTTGAAATGAGGAATATCCTTTGATGG
GTATTTGCATGATAAACGTTGACATTGTCTAATTTCTCCGTCTGTTCAAG
TGTGAAGCCA
Run BLAST on NCBI

transcript from alignment at sc0000745:81002..81511

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029395 ID=TCONS_00029395|Name=TCONS_00029395|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000745:81002..81511 (Clytia hemisphaerica)
TGGCTTCACACTTGAACAGACGGAGAAATTAGACAATGTCAACGTTTATC
ATGCAAATACCCATCAAAGGATATTCCTCATTTCAAAACAAGGCGGTATG
TTTTCATCAAccattaaaagaaaattgaaaagctATTTTTTGGTCTATGA
TATTTTACGGGATGGTATTTTCATGGAAATTACGTCACTTTCCTATTCAT
ACTATAATGATTTCAAAGTCAAGTCAATCCTCCTATAAGGTTTCCGGTGG
GGAAAAAGGTAAAAATTCACAAACACAACGGTACAGGAGAACAAGCCATT
ATCGTCTAGTACGAGCTAGATTATACTCCGAAGGGATTGCACTTTGGAAA
AACAGGTGAGAGGTATGTGCAAGCCATAAGGGTATCCTTTTTCATACCTT
ACAAAAAATGAACGACTTCGAAGTCACGTCAATCCTCCTACAAGGTTTCC
TCACGAATAAATAACGGATACCCTTTTTTATTCAGTACATAATATTTTAC
ATAACTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016769XLOC_016769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029395-exon-sc0000745-1491911889:81002..81511TCONS_00029395-exon-sc0000745-1491911889:81002..81511Clytia hemisphaericaexon
TCONS_00029395-exon-sc0000745-1510915933:81002..81511TCONS_00029395-exon-sc0000745-1510915933:81002..81511Clytia hemisphaericaexon
TCONS_00029395-exon-sc0000745-1575043694:81002..81511TCONS_00029395-exon-sc0000745-1575043694:81002..81511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000745supercontigsc0000745:81002..81511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117866	0.114938	0	0.522256	0.158949	0	0.757678	0.425598	0.297971	1.10726	0.358243	0.156997	0.862281	1.13971	0	0.143649	0	0	0	0.131112	0.11396	0.166757	0	0	1.39203	2.14588	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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