TCONS_00029399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029399
Unique NameTCONS_00029399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029399 ID=TCONS_00029399|Name=TCONS_00029399|organism=Clytia hemisphaerica|type=transcript|length=802bp
CTTCGAACCACTTGGTCAGGACGTACTCAACTTCAATTCAACATTAGCTT
ACTCGTCGTTCATTAGCTGTAGTGACACTCATAGAGCTTGGgaaacattt
gaaatttttttgcatgGTACAGTACTTGAGCTTATTCGTTTGTATGCCGA
TAAAAAAGACATGGAAGAATTGTCTCCTGCAGGATTTGTTCATTGGCAGT
CAGAACAATCTTCTGCTACACTAAAGTTTATATTTCATTTGTTGGACTTT
GCGCTTGGGGTATACATTCAACGAGTGGGTGACCGCAATAACGATGCCAA
TGTTAGCAATGCTGGAAGGTATGCCTTCAATgattggttttatggcttta
atcATCCTTATTATCGTGAAATTGAATATAGAGATTTGTTAATGAAATCT
ACAATGCCTGAAGAAGTAGAGCAGCAAACAAGAGAAAATTTGACATTCTC
TTCTCACAATGTAAATAGCAGAAACCAGGGTGGGGATTTCATGCTGGAGC
AAAAAGTCCAACGGCAAAAGTTAATGGCTCCGAAAGGTATTGTTAACAAA
TCTACCTGGCAACGTATATCTAGATCAGTCGATACTCTAGATAGCATCTA
TTCCAATGCGTCCAAATTGTTACATTTGGAAACTGATACTTACCCAAGAG
TTGTACTGTTAAGCGACGAAATTAATGAATGGAGAGCTATTTTAAGACAG
TCTCAATTTCTTGAATACACAAGTAAAGATACAGTGTACAACATTTATGG
TGATATTTTGAGTGATGACTTAGTAAATCTCACATCAAATCTTAAATCAA
AA
Run BLAST on NCBI

protein sequence of TCONS_00029399-protein

>TCONS_00029399-protein ID=TCONS_00029399-protein|Name=TCONS_00029399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
FEPLGQDVLNFNSTLAYSSFISCSDTHRAWETFEIFLHGTVLELIRLYAD
KKDMEELSPAGFVHWQSEQSSATLKFIFHLLDFALGVYIQRVGDRNNDAN
VSNAGRYAFNDWFYGFNHPYYREIEYRDLLMKSTMPEEVEQQTRENLTFS
SHNVNSRNQGGDFMLEQKVQRQKLMAPKGIVNKSTWQRISRSVDTLDSIY
SNASKLLHLETDTYPRVVLLSDEINEWRAILRQSQFLEYTSKDTVYNIYG
DILSDDLVNLTSNLKSK
Run BLAST on NCBI

transcript from alignment at sc0000745:142928..143729

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029399 ID=TCONS_00029399|Name=TCONS_00029399|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0000745:142928..143729 (Clytia hemisphaerica)
TTTTGATTTAAGATTTGATGTGAGATTTACTAAGTCATCACTCAAAATAT
CACCATAAATGTTGTACACTGTATCTTTACTTGTGTATTCAAGAAATTGA
GACTGTCTTAAAATAGCTCTCCATTCATTAATTTCGTCGCTTAACAGTAC
AACTCTTGGGTAAGTATCAGTTTCCAAATGTAACAATTTGGACGCATTGG
AATAGATGCTATCTAGAGTATCGACTGATCTAGATATACGTTGCCAGGTA
GATTTGTTAACAATACCTTTCGGAGCCATTAACTTTTGCCGTTGGACTTT
TTGCTCCAGCATGAAATCCCCACCCTGGTTTCTGCTATTTACATTGTGAG
AAGAGAATGTCAAATTTTCTCTTGTTTGCTGCTCTACTTCTTCAGGCATT
GTAGATTTCATTAACAAATCTCTATATTCAATTTCACGATAATAAGGATg
attaaagccataaaaccaatcATTGAAGGCATACCTTCCAGCATTGCTAA
CATTGGCATCGTTATTGCGGTCACCCACTCGTTGAATGTATACCCCAAGC
GCAAAGTCCAACAAATGAAATATAAACTTTAGTGTAGCAGAAGATTGTTC
TGACTGCCAATGAACAAATCCTGCAGGAGACAATTCTTCCATGTCTTTTT
TATCGGCATACAAACGAATAAGCTCAAGTACTGTACcatgcaaaaaaatt
tcaaatgtttcCCAAGCTCTATGAGTGTCACTACAGCTAATGAACGACGA
GTAAGCTAATGTTGAATTGAAGTTGAGTACGTCCTGACCAAGTGGTTCGA
AG

Coding sequence (CDS) from alignment at sc0000745:142928..143729

>TCONS_00029399 ID=TCONS_00029399|Name=TCONS_00029399|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0000745:142928..143729 (Clytia hemisphaerica)
TTTTGATTTAAGATTTGATGTGAGATTTACTAAGTCATCACTCAAAATAT
CACCATAAATGTTGTACACTGTATCTTTACTTGTGTATTCAAGAAATTGA
GACTGTCTTAAAATAGCTCTCCATTCATTAATTTCGTCGCTTAACAGTAC
AACTCTTGGGTAAGTATCAGTTTCCAAATGTAACAATTTGGACGCATTGG
AATAGATGCTATCTAGAGTATCGACTGATCTAGATATACGTTGCCAGGTA
GATTTGTTAACAATACCTTTCGGAGCCATTAACTTTTGCCGTTGGACTTT
TTGCTCCAGCATGAAATCCCCACCCTGGTTTCTGCTATTTACATTGTGAG
AAGAGAATGTCAAATTTTCTCTTGTTTGCTGCTCTACTTCTTCAGGCATT
GTAGATTTCATTAACAAATCTCTATATTCAATTTCACGATAATAAGGATg
attaaagccataaaaccaatcATTGAAGGCATACCTTCCAGCATTGCTAA
CATTGGCATCGTTATTGCGGTCACCCACTCGTTGAATGTATACCCCAAGC
GCAAAGTCCAACAAATGAAATATAAACTTTAGTGTAGCAGAAGATTGTTC
TGACTGCCAATGAACAAATCCTGCAGGAGACAATTCTTCCATGTCTTTTT
TATCGGCATACAAACGAATAAGCTCAAGTACTGTACcatgcaaaaaaatt
tcaaatgtttcCCAAGCTCTATGAGTGTCACTACAGCTAATGAACGACGA
GTAAGCTAATGTTGAATTGAAGTTGAGTACGTCCTGACCAAGTGGTTCGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016773XLOC_016773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029399-exon-sc0000745-1491911889:142928..143729TCONS_00029399-exon-sc0000745-1491911889:142928..143729Clytia hemisphaericaexon
TCONS_00029399-exon-sc0000745-1510915933:142928..143729TCONS_00029399-exon-sc0000745-1510915933:142928..143729Clytia hemisphaericaexon
TCONS_00029399-exon-sc0000745-1575043694:142928..143729TCONS_00029399-exon-sc0000745-1575043694:142928..143729Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029399-proteinTCONS_00029399-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000745supercontigsc0000745:142928..143729 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.161362	0	0.461507	0.360047	0.504155	0.312239	0.242453	0.836741	0.397894	0.619826	0.271777	0.328115	0.224562	0.736539	0.127196	0.133101	0.289223	0.338575	0.274388	0.249459	0	0.68793	0	0	0.199212	0.202965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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