TCONS_00029434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029434
Unique NameTCONS_00029434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029434 ID=TCONS_00029434|Name=TCONS_00029434|organism=Clytia hemisphaerica|type=transcript|length=1143bp
NTCTGGTTCATCTTGAAGGATCTAAACCAAAGCAAACGCAAAAGAAAACC
AAAGATTCTGCGTTAATGACTTATCAATATGTCGAGCGAGTGTCTTCAAA
TCAAGAAGACAAAAAAGATGTACCAAATCTCACCAAAGACATCGCAGAAA
TTGAGCTGGATAACGCATTGTATGATAAGCCAGTTTCCACGTCATCATCG
TCAGCTATGAGCACTGGTACACCTAGCAGCCTTGGTGATTCAGGTTCTAG
TGATTCATCATTACTTGGAAAACTTGAGgattgcgtcaaaacacttagGG
AGGACCATGAGTTGAGAGTCATTGGAGATCCTGCATTACAAGTTGAACTT
TCTCCTTCAAAGAACCATTTCACGGCAACTACAGATATAAAAATAAAGAC
CACTAGAATCGatttgagagaaaaagaaactgcgTTCCCACTTCACAAGA
CTGTTGCACAAAGATACGGAAGCTCTTTGGAATCGAATCCTGGTGATGAT
CTGGACGAACAAAGGAACAAGATCAAGGAAGAAAGTCTAGCCATCATTCG
CTCAAGAGAAAAAGAACTGAGAAGTTTCGGGACATCTACAGACAACAGCT
GTTGTCCACAACCCAAAATCGGAATGGCCAGAATGGCGTTACGACCAAGC
ATTCACTCTTCAGCCAAGTATGAAATGACGTCTGAAGCTCGTCAACAAGC
TGTAGACTGCATGCTTGCCAAAGTGGATGAAATACGAATGAGCATCTCCG
ATCCTGGTTGCCAAATCGATAGCACCGGTTTGATTACTCCAAACGGGGAT
GTGAAACCAGTTTACGATACCTTCATGAATACGTCACTTCGCCCGAACGG
GGAACGGGATGCGTATGATGAcgtaatggatgacaaaatggAAATTGACG
AAGAAGTAGAGTACGTTCAAAATTACGTCACCTTTGATCAGTCCACAGGT
GAATCATCATCTCTGATGAACACAGAATCTCAAAACAGCGGCACAGtttt
agACATTGAGAAACTTGAAAGTGAGGCGTTGGAGGAGAATCCGCATACGG
TAGACACAGATACTAAAATGCAAGTCGTTGGCTGGAATAAGTATCTGGAT
GTAGACAACAGCGAACAGTCAACTTTTAAGTGTAGTCCAGTCA
Run BLAST on NCBI

transcript from alignment at sc0000748:44001..47211+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029434 ID=TCONS_00029434|Name=TCONS_00029434|organism=Clytia hemisphaerica|type=transcript|length=3211bp|location=Sequence derived from alignment at sc0000748:44001..47211+ (Clytia hemisphaerica)
NTCTGGTTCATCTTGAAGGATCTAAACCAAAGCAAACGCAAAAGAAAACC
AAAGGTAGTGGTCAAATTTCTTCTGCCTTAATCAGATTTCTTGTCTAAGT
TAAATTGTGCatactttcaaaatttattgaaattgaaGATAAAAGCAAGA
TATCGGAGAGTTTGGTCAATTAATTCTATTTCCTTCCTTACACCTTTAGT
TAATGCATCAAAGTTTATTGGTGGGAATTTATATGCTTGCCCCCTATGCA
AGATCCCTTGTATTTTGTGGCAGTCTCTTTTACGCTTTCAAACTTCCTGA
TTATATCTATTTATATCTTTGTAACATACTAAAGGGACGAACTNTTTTCA
AACTTCCTGATTATATCTTTTTATATCTTTGTAACATACTAAAGGGAGGA
ACTTAGTACGGCAAAACTTTCATCAGAGGTGAATTTTTCATGGGGGGGCT
TGTCACTGGCCTATAAAAATTATGTCCATTTTTCCTAACTGAGCTTTCTT
CTTTAAGGGACAATTATTATCTGCTTATCTTTTAGATTCTGCGTTAATGA
CTTATCAATATGTCGAGCGAGTGTCTTCAAATCAAGAAGACAAAAAAGAT
GTACCAAATCTCACCAAAGACATCGCAGAAATTGAGCTGGATAACGCATT
GTATGATAAGCCAGTTTCCACGTCATCATCGTCAGCTATGAGCACTGGTA
CACCTAGCAGCCTTGGTGATTCAGGTTCTAGTGATTCATCATTACTTGGA
AAACTTGAGgattgcgtcaaaacacttagGGAGGACCATGAGTTGAGAGT
CATTGGAGATCCTGCATTACAAGTTGAACTTTCTCCTTCAAAGAACCATT
TCACGGCAACTACAGATATAAAAATAAAGACCACTAGAATCGatttgaga
gaaaaagaaactgcggtaatttttgttttcagaGCTCGCCATACTATACA
TTTTACTCCTCAGTGGATTGTGTTTGTTAAGGATTNGACTACAGatataa
aagtaaaaaagacCACTAGAATCGatttgagagaaaaagaaactgcggta
atttttgttttcagaGCTCGCCATACTATACATTTTACTCCTCAGTGGAT
TGTGTTTGTTAAGGATTTTGTGATTCAGTCCTTGTCCAGCATTATCGTGA
GACTAATCTAGATCTTTTTTGGCTAACATTTAGTTTTGCAGACATGGGAT
TGCCACTCAACATGTAGTGGACTTTCATTTGTGAAAATTTGATCTTGTCA
ACTTATCATTTTAGTTCCCACTTCACAAGACTGTTGCACAAAGATACGGA
AGGTAATCCAGTATTTTGAGCCAGTTAACACTCCCAATAGCGTAgcgaaa
gtgtttttttttttctccgggtaccccggtggaggtcctttaaattaacc
catgttcgttcgttcattcgtctgttaccagcttttcttgggattggctc
attatattttctgtattttggcacaatgatgcaaaatgacgaTTCCTAAA
AAGTggcggagcccgattttcgagaaaaaaaatttccggccgaatatgcc
ggaaaaactgtttttttggcattttctcgagattttatctttagtttttt
cttattttttactcaaagatgcgtattaacaatgcccaaaatatggctga
gttcaatttttgagaaaaatttttttcccgcagaaaatgctggaaatcgc
agtttttctggattttcattggactttttactttataattggttgttttt
tcattcaaaaacattattaatagcaatgcccaccatcaagcatgtttcaa
ttttcaataaaataaatttttgaaaccggaactatttaaaaaccaccttt
ttatatttttaaaaaccaccggaacaacctatttttgccggaaagacagt
atttcttgaatttctcgagctgtactaaactgtttttttaacattttctc
aaattttcatcctcagttttttgcagaaagatgcgtattcgcaatgctca
aaacatggccgagttcgatttttgagaaaaaaaaatttccggttgaaaat
ggcggaaatcgccgtttttgcagattttcattggattttttcctatATTT
CTacgtttttcacacaaaaacattattgataacaatgctcaccatcaagc
atgattcaattgtcaataaaacttatATCAACTTTTGTTTTCTCAGCTCT
TTGGAATCGAATCCTGGTGATGATCTGGACGAACAAAGGAACAAGATCAA
GGAAGAAAGTCTAGCCATCATTCGCTCAAGAGAAAAAGAACTGAGAAGTT
TCGGGACATCTACAGACAACAGCTGTTGTCCACAACCCAAAATCGGAATG
GCCAGAATGGCGTTACGACCAAGCATTCACTCTTCAGCCAAGTATGAAAT
GACGTCTGAAGCTCGTCAACAAGCTGTAGACTGCATGCTTGCCAAAGTGG
ATGAAATACGAATGAGCATCTCCGATCCTGGTTGCCAAATCGATAGCACC
GGTTTGATTACTCCAAACGGGGATGTGAAACCAGTTTACGATACCTTCAT
GAATACGTCACTTCGCCCGAACGGGGAACGGGATGCGTATGATGAcgtaa
tggatgacaaaatggAAATTGACGAAGAAGTAGAGTACGTTCAAAATTAC
GTCACCTTTGATCAGTCCACAGGTGAATCATCATCTCTGATGAACACAGA
ATCTCAAAACAGCGGCACAGGTAAACATTCCCTTTCTTTTTTCCTGCTAT
TTTATTTTAAGATTACGAAGAGATTTCTTTTCAACNCTTCctttttcttg
ctattttaTTTTAAGATTACGAAGAGATATCTTTTCTACTTTGtcttcaa
aactttatgaataATATTGGCTTAAATTTCATTGATGAGGTTTTTGTCAT
CAGCAAAAAGCATTCTCAAACTCTCCTTTTCTTTTGCCAGAATGATTTCT
GGAAGCCTCTGTTCTATcagcgaaaattgaaaaattctagGCACGGTTTC
TGTATTGGTTGTAATGTTTGAAGACAAAAAACCCACAACTagtttattct
ctttttttgtttagttttagACATTGAGAAACTTGAAAGTGAGGCGTTGG
AGGAGAATCCGCATACGGTAGACACAGATACTAAAATGCAAGTCGTTGGC
TGGAATAAGTATCTGGATGTAGACAACAGCGAACAGTCAACTTTTAAGTG
TAGTCCAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016801XLOC_016801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029434-exon-sc0000748-1491911889:44001..44054TCONS_00029434-exon-sc0000748-1491911889:44001..44054Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1510915933:44001..44054TCONS_00029434-exon-sc0000748-1510915933:44001..44054Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1575043694:44001..44054TCONS_00029434-exon-sc0000748-1575043694:44001..44054Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1491911889:44536..44915TCONS_00029434-exon-sc0000748-1491911889:44536..44915Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1510915933:44536..44915TCONS_00029434-exon-sc0000748-1510915933:44536..44915Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1575043694:44536..44915TCONS_00029434-exon-sc0000748-1575043694:44536..44915Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1491911889:45265..45302TCONS_00029434-exon-sc0000748-1491911889:45265..45302Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1510915933:45265..45302TCONS_00029434-exon-sc0000748-1510915933:45265..45302Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1575043694:45265..45302TCONS_00029434-exon-sc0000748-1575043694:45265..45302Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1491911889:46197..46720TCONS_00029434-exon-sc0000748-1491911889:46197..46720Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1510915933:46197..46720TCONS_00029434-exon-sc0000748-1510915933:46197..46720Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1575043694:46197..46720TCONS_00029434-exon-sc0000748-1575043694:46197..46720Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1491911889:47065..47211TCONS_00029434-exon-sc0000748-1491911889:47065..47211Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1510915933:47065..47211TCONS_00029434-exon-sc0000748-1510915933:47065..47211Clytia hemisphaericaexon
TCONS_00029434-exon-sc0000748-1575043694:47065..47211TCONS_00029434-exon-sc0000748-1575043694:47065..47211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000748supercontigsc0000748:44001..47211 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.00516e-07	0.00219548	0	6.72363e-09	2.72358e-08	1.86501	0.166127	2.03837	0	0	0	0	0.0580951	0.412202	0	0.000279681	0.000396993	0	1.16272	0	0	0.206026	0	0.000221952	0.889683	0.288804	0	0.283061	1.34623e-05	0.406339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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