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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029439 ID=TCONS_00029439|Name=TCONS_00029439|organism=Clytia hemisphaerica|type=transcript|length=771bp
NGACTACAGatataaaagtaaaaaagacCACTAGAATCGatttgagagaa
aaagaaactgcgTTCCCACTTCACAAGACTGTTGCACAAAGATACGGAAG
CTCTTTGGAATCGAATCCTGGTGATGATCTGGACGAACAAAGGAACAAGA
TCAAGGAAGAAAGTCTAGCCATCATTCGCTCAAGAGAAAAAGAACTGAGA
AGTTTCGGGACATCTACAGACAACAGCTGTTGTCCACAACCCAAAATCGG
AATGGCCAGAATGGCGTTACGACCAAGCATTCACTCTTCAGCCAAGTATG
AAATGACGTCTGAAGCTCGTCAACAAGCTGTAGACTGCATGCTTGCCAAA
GTGGATGAAATACGAATGAGCATCTCCGATCCTGGTTGCCAAATCGATAG
CACCGGTTTGATTACTCCAAACGGGGATGTGAAACCAGTTTACGATACCT
TCATGAATACGTCACTTCGCCCGAACGGGGAACGGGATGCGTATGATGAc
gtaatggatgacaaaatggAAATTGACGAAGAAGTAGAGTACGTTCAAAA
TTACGTCACCTTTGATCAGTCCACAGGTGAATCATCATCTCTGATGAACA
CAGAATCTCAAAACAGCGGCACAGttttagACATTGAGAAACTTGAAAGT
GAGGCGTTGGAGGAGAATCCGCATACGGTAGACACAGATACTAAAATGCA
AGTCGTTGGCTGGAATAAGTATCTGGATGTAGACAACAGCGAACAGTCAA
CTTTTAAGTGTAGTCCAGTCA Run BLAST on NCBI transcript from alignment at sc0000748:44986..47211+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029439 ID=TCONS_00029439|Name=TCONS_00029439|organism=Clytia hemisphaerica|type=transcript|length=2226bp|location=Sequence derived from alignment at sc0000748:44986..47211+ (Clytia hemisphaerica)
NGACTACAGatataaaagtaaaaaagacCACTAGAATCGatttgagagaa
aaagaaactgcggtaatttttgttttcagaGCTCGCCATACTATACATTT
TACTCCTCAGTGGATTGTGTTTGTTAAGGATTTTGTGATTCAGTCCTTGT
CCAGCATTATCGTGAGACTAATCTAGATCTTTTTTGGCTAACATTTAGTT
TTGCAGACATGGGATTGCCACTCAACATGTAGTGGACTTTCATTTGTGAA
AATTTGATCTTGTCAACTTATCATTTTAGTTCCCACTTCACAAGACTGTT
GCACAAAGATACGGAAGGTAATCCAGTATTTTGAGCCAGTTAACACTCCC
AATAGCGTAgcgaaagtgtttttttttttctccgggtaccccggtggagg
tcctttaaattaacccatgttcgttcgttcattcgtctgttaccagcttt
tcttgggattggctcattatattttctgtattttggcacaatgatgcaaa
atgacgaTTCCTAAAAAGTggcggagcccgattttcgagaaaaaaaattt
ccggccgaatatgccggaaaaactgtttttttggcattttctcgagattt
tatctttagttttttcttattttttactcaaagatgcgtattaacaatgc
ccaaaatatggctgagttcaatttttgagaaaaatttttttcccgcagaa
aatgctggaaatcgcagtttttctggattttcattggactttttacttta
taattggttgttttttcattcaaaaacattattaatagcaatgcccacca
tcaagcatgtttcaattttcaataaaataaatttttgaaaccggaactat
ttaaaaaccacctttttatatttttaaaaaccaccggaacaacctatttt
tgccggaaagacagtatttcttgaatttctcgagctgtactaaactgttt
ttttaacattttctcaaattttcatcctcagttttttgcagaaagatgcg
tattcgcaatgctcaaaacatggccgagttcgatttttgagaaaaaaaaa
tttccggttgaaaatggcggaaatcgccgtttttgcagattttcattgga
ttttttcctatATTTCTacgtttttcacacaaaaacattattgataacaa
tgctcaccatcaagcatgattcaattgtcaataaaacttatATCAACTTT
TGTTTTCTCAGCTCTTTGGAATCGAATCCTGGTGATGATCTGGACGAACA
AAGGAACAAGATCAAGGAAGAAAGTCTAGCCATCATTCGCTCAAGAGAAA
AAGAACTGAGAAGTTTCGGGACATCTACAGACAACAGCTGTTGTCCACAA
CCCAAAATCGGAATGGCCAGAATGGCGTTACGACCAAGCATTCACTCTTC
AGCCAAGTATGAAATGACGTCTGAAGCTCGTCAACAAGCTGTAGACTGCA
TGCTTGCCAAAGTGGATGAAATACGAATGAGCATCTCCGATCCTGGTTGC
CAAATCGATAGCACCGGTTTGATTACTCCAAACGGGGATGTGAAACCAGT
TTACGATACCTTCATGAATACGTCACTTCGCCCGAACGGGGAACGGGATG
CGTATGATGAcgtaatggatgacaaaatggAAATTGACGAAGAAGTAGAG
TACGTTCAAAATTACGTCACCTTTGATCAGTCCACAGGTGAATCATCATC
TCTGATGAACACAGAATCTCAAAACAGCGGCACAGGTAAACATTCCCTTT
CTTTTTTCCTGCTATTTTATTTTAAGATTACGAAGAGATTTCTTTTCAAC
NCTTCctttttcttgctattttaTTTTAAGATTACGAAGAGATATCTTTT
CTACTTTGtcttcaaaactttatgaataATATTGGCTTAAATTTCATTGA
TGAGGTTTTTGTCATCAGCAAAAAGCATTCTCAAACTCTCCTTTTCTTTT
GCCAGAATGATTTCTGGAAGCCTCTGTTCTATcagcgaaaattgaaaaat
tctagGCACGGTTTCTGTATTGGTTGTAATGTTTGAAGACAAAAAACCCA
CAACTagtttattctctttttttgtttagttttagACATTGAGAAACTTG
AAAGTGAGGCGTTGGAGGAGAATCCGCATACGGTAGACACAGATACTAAA
ATGCAAGTCGTTGGCTGGAATAAGTATCTGGATGTAGACAACAGCGAACA
GTCAACTTTTAAGTGTAGTCCAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029439-exon-sc0000748-1491911889:44986..45047 | TCONS_00029439-exon-sc0000748-1491911889:44986..45047 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1510915933:44986..45047 | TCONS_00029439-exon-sc0000748-1510915933:44986..45047 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1575043694:44986..45047 | TCONS_00029439-exon-sc0000748-1575043694:44986..45047 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1491911889:45265..45302 | TCONS_00029439-exon-sc0000748-1491911889:45265..45302 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1510915933:45265..45302 | TCONS_00029439-exon-sc0000748-1510915933:45265..45302 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1575043694:45265..45302 | TCONS_00029439-exon-sc0000748-1575043694:45265..45302 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1491911889:46197..46720 | TCONS_00029439-exon-sc0000748-1491911889:46197..46720 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1510915933:46197..46720 | TCONS_00029439-exon-sc0000748-1510915933:46197..46720 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1575043694:46197..46720 | TCONS_00029439-exon-sc0000748-1575043694:46197..46720 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1491911889:47065..47211 | TCONS_00029439-exon-sc0000748-1491911889:47065..47211 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1510915933:47065..47211 | TCONS_00029439-exon-sc0000748-1510915933:47065..47211 | Clytia hemisphaerica | exon |
| TCONS_00029439-exon-sc0000748-1575043694:47065..47211 | TCONS_00029439-exon-sc0000748-1575043694:47065..47211 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000748 | supercontig | sc0000748:44986..47211 + |
Blast
The following BLAST results are available for this feature:
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