TCONS_00029442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029442
Unique NameTCONS_00029442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029442 ID=TCONS_00029442|Name=TCONS_00029442|organism=Clytia hemisphaerica|type=transcript|length=789bp
cGGAAGGTGTTGACTATTAGTTTTCAGCTTCCCCTGAAACTGACTTAACG
TCGGTTTTCCCTGAAATTGACTagtatttattattattttgatgtttcaG
CTGTTTACCACTTGGCCTACATAGATGTCTGTAAACCCAAGATCGGCAAA
TTTTTAACCTGATAGCAGCTGCTCATAATTTTCTTatgtgcacggtaaac
ctctgaaagcacttgaaaattatcctcccgcagaaaattttacaacaaga
atcttgttgtgcgccagaaagtcaataaataaataataaccggtgattat
aaaaacaaaaatgatatttaaaatttctttggtggtaTTCTTGTTGTCTT
TACACAATGTTGGATGTGATGTGTTACATGAAGTCAAGCAATACGAAGAA
TTGAAAGCACTTTTAAGCTTGGATGACGCAGTTGGTGTATTTTATTATAC
TCACAATGCCGCCTCAGAATTCAAAAGCAGAACACTTCAAATTATGGGTA
AAGTACAAGACAGGATGAAGAAATCAGGCAAATATTGGATCAGGCTGGTT
AAGGTCAATTGTGCTGCTCCCACAATCCAAGATCAAAAATTGCCAGAATG
TGAAAAGAAGAGATCTTTTGTTGCTTCTAAGATGAAAGGGAAAGTGGTGC
AACCTTACTCTTTATCAGAACTGTTCAGCGTTTCCAGCTTTGAAGCACAG
GTTATCAGGTCTGTATACATATAACAGTTctgtaaaataaaatcctcatt
AGCACAGCATCAGGCCTTTCATGAGCATGTTGCTGCCTG
Run BLAST on NCBI

protein sequence of TCONS_00029442-protein

>TCONS_00029442-protein ID=TCONS_00029442-protein|Name=TCONS_00029442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MIFKISLVVFLLSLHNVGCDVLHEVKQYEELKALLSLDDAVGVFYYTHNA
ASEFKSRTLQIMGKVQDRMKKSGKYWIRLVKVNCAAPTIQDQKLPECEKK
RSFVASKMKGKVVQPYSLSELFSVSSFEAQVIRSVYI
Run BLAST on NCBI

transcript from alignment at sc0000748:117..3010-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029442 ID=TCONS_00029442|Name=TCONS_00029442|organism=Clytia hemisphaerica|type=transcript|length=2894bp|location=Sequence derived from alignment at sc0000748:117..3010- (Clytia hemisphaerica)
CGGAAGGTGTTGACTATTAGTTTTCAGCTTCCCCTGAAACTGACTTAACG
TCGGTTTTCCCTGAAATTGACTAGTATTTATTATTATTTTGATGTTTCAG
CTGTTTACCACTTGGCCTACATAGATGTCTGTAAACCCAAGATCGGCAAA
TTTTTAACCTGATAGCAGCTGCTCATAATTTTCTTATGTGCACGGTAAAC
CTCTGAAAGCACTTGAAAATTATCCTCCCGCAGAAAATTTTACAACAAGA
ATCTTGTTGTGCGCCAGAAAGTCAATAAATAAATAATAACCGGTGATTAT
AAAAACAAAAATGATATTTAAAATTTCTTTGGTGGTATTCTTGTTGTCTT
TACACAATGTTGGATGTGATGTGTTACATGAAGTCAAGCAATACGAAGAA
TTGAAAGCACTTTTAAGCTTGGATGACGCAGTTGGTGTATTTTATTATAC
TCACAATGCCGCCTCAGAATTCAAAAGTAAGTATTATTGATGTTTTAAAG
TCAATTTTGTCACTTTTGGACAATACAAAAGTAATAACGAATCAAGATGA
AAAGGATTGTGGGATTGGATCTCGGTCAAATGTTAAAAGTGATAATTATG
GTGCGTTTGCCATAGCGGTGTGCTATTGACACGCTAATTTTCTCTCAAAT
TAGTACGCGATAACGCTGCGAATCCTCCCGCGCGATATCCTAGAGTTTTA
TTTCCGTAATTCGGAGCAGATAATTTCTGGCCCGAACGACTGGAGTAATT
AATATGCGGAATTAAGTCAATAGGTATCGCGTTCTCCTAAACGACTATTA
TGCTCTTTTAATTCTTCCCACCAGACTCTCTGACCATCTATATTTCTCAT
CTCTGACTACTTGAATGGATAGGGCTTTCATATAATAGGAATCGTGTCCA
GTTTTAGGGCTGGCTACAATTATGAACGAAAATGGGGAGGCAAGAGCATA
ATATAAGCTCTAGTTTAGACGGCCGACTTTCTGCCCTGCCTATTCTAATT
GTTGAAGTAGACACAGAAAGTGGACACGAAGCTGGCAATTAAAATCTTTC
CTTAAAAAAGATTGAAAGAAGCCATTGCATTGATGTCAAAAGAGGTCAAT
TGATTGACTTTAGACAGTCCACTTTACAATTAAAATAGGCAGGGTGAAAA
GTGAGCCGTCTAAACTACAGCTAAGCTTCATCCCCTCCCTCCCCCAGTGG
CAAGGTTGAAGGTCGCTGGGACGGCTGTTCGCACTCAACATTGCCACTCG
TTAATTTCCAGCATTTTCCAGTGTTTTTTCTCAAACATTAAAGTCCATGA
TTGTAGTCCCGCCATCTTGTTTTCAATTTTCTATATTCTCAATGGGGTGG
AAAATCTATTGTTCCCGGGCTCAAAGTCAATATCCCACCGGGGCCGAAAT
TGTAGGGTATTTTGTCCACCGGGGACTACATTTTGGTAACATTTTTCAGT
GGGGCTTGAGTTTCAGCAGGTCTGTGACACAGGTGTGTCATCGTTTTCAA
GGAGATCATAGCCAGTTGGATCGACTATGTATTTGTGAATATTATATTTC
TAATTGCTCATCATGTCCCTATTTTTTATAGGCAGAACACTTCAAATTAT
GGGTAAAGTACAAGACAGGATGAAGAAATCAGGCAAATATTGGATCAGGC
TGGTTAAGGTAATATTGATTTTGATTAAATACACCTTTTCGACCGTAGCC
GCCAATTGCCGCGCGGGTATTTTTTTGTCCGTTTACCACCCCTATAACCG
TCCCAGTCTTTTTTTTTCGTACCAATAGACATAGAAAAAGATGTCAAAAA
GGATTAGATCGAGTTTAGGGGGATAATTAGATAATAAAGTGACGAGGGGT
GTATTAAAAATATGCTAATAATTGATTTTACCTGGCAGGTAGTGACCATT
CAAAAGTACGTACCTTTTCGGGGAAAACTTCGTCGGAGAAAATTTTTGTC
GGGGAAAATTTTTGTCGGGGAAAAATATTCGTCACTTGCTGGTAGTTTTC
CCCGATAAGGTTTTTTTTTTTAGTCAGTGAGAGGGAAGGGGCAGGAGTAC
TATGAAAACATACGTGAGCGTACAAGGGGGAGGGGTTCAGATTTTGCTTT
ATTTGAATGTACGTACTTTTTGAATGGTCCCCAACCAATTTATACATTGT
TGAAAACTGCTAGATCTACCTACATACGCCGTCGATCTTCTTTCCTTAAC
TTTGTGCCTTCTGTCGTCGTTTTGATGCATTCTCTGAAACGAAACTGCGT
CAGAAACATATTTTATGACAGAGGTCACCTAATAAACCAACGACCCTTGT
TTTTTATTTTTCAATTTTTCCCATCCTCTTTCCGAGGACCTCGTTCTTTA
TATTTGTAAATATTTTACAAATAAAACTTCCGCCCCCTTCCCATAATACT
CACTTTTCTCAATTTTATTTTAGGTCAATTGTGCTGCTCCCACAATCCAA
GATCAAAAATTGCCAGAATGTGAAAAGAAGAGATCTTTTGTTGCTTCTAA
GTAAGCCCATTCTCTTTACCTTTGTTCTGTTATATGCACGTTTTTTTTAT
AAGAACAAACTATAAGAACATACTGCTCCGATGTCCAAAATATTAAGATC
AAGTTAAGAAAAGAAGCATAAATGGATTTCTTTTTTGAAATCTCTCGTTT
TTTTATGATTTACCCACAAGTCTAAATTACCTTGTCTTTACTCATTCGTA
AACCATAACTCAAATCATCTTTTTCCTTTTCATAGGATGAAAGGGAAAGT
GGTGCAACCTTACTCTTTATCAGAACTGTTCAGCGTTTCCAGCTTTGAAG
CACAGGTTATCAGGTCTGTATACATATAACAGTTCTGTAAAATAAAATCC
TCATTAGCACAGCATCAGGCCTTTCATGAGCATGTTGCTGCCTG

Coding sequence (CDS) from alignment at sc0000748:117..3010-

>TCONS_00029442 ID=TCONS_00029442|Name=TCONS_00029442|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0000748:117..3010- (Clytia hemisphaerica)
GATGAAAGGGAAAGTGGTGCAACCTTACTCTTTATCAGAACTGTTCAGCG
TTTCCAGCTTTGAAGCACAGGTTATCAGGTCTGTATACATATAAGTCAAT
TGTGCTGCTCCCACAATCCAAGATCAAAAATTGCCAGAATGTGAAAAGAA
GAGATCTTTTGTTGCTTCTAAGCAGAACACTTCAAATTATGGGTAAAGTA
CAAGACAGGATGAAGAAATCAGGCAAATATTGGATCAGGCTGGTTAAGAT
GATATTTAAAATTTCTTTGGTGGTATTCTTGTTGTCTTTACACAATGTTG
GATGTGATGTGTTACATGAAGTCAAGCAATACGAAGAATTGAAAGCACTT
TTAAGCTTGGATGACGCAGTTGGTGTATTTTATTATACTCACAATGCCGC
CTCAGAATTCAAAAGATGAAAGGGAAAGTGGTGCAACCTTACTCTTTATC
AGAACTGTTCAGCGTTTCCAGCTTTGAAGCACAGGTTATCAGGTCTGTAT
ACATATAAGTCAATTGTGCTGCTCCCACAATCCAAGATCAAAAATTGCCA
GAATGTGAAAAGAAGAGATCTTTTGTTGCTTCTAAGCAGAACACTTCAAA
TTATGGGTAAAGTACAAGACAGGATGAAGAAATCAGGCAAATATTGGATC
AGGCTGGTTAAGATGATATTTAAAATTTCTTTGGTGGTATTCTTGTTGTC
TTTACACAATGTTGGATGTGATGTGTTACATGAAGTCAAGCAATACGAAG
AATTGAAAGCACTTTTAAGCTTGGATGACGCAGTTGGTGTATTTTATTAT
ACTCACAATGCCGCCTCAGAATTCAAAAGATGAAAGGGAAAGTGGTGCAA
CCTTACTCTTTATCAGAACTGTTCAGCGTTTCCAGCTTTGAAGCACAGGT
TATCAGGTCTGTATACATATAAGTCAATTGTGCTGCTCCCACAATCCAAG
ATCAAAAATTGCCAGAATGTGAAAAGAAGAGATCTTTTGTTGCTTCTAAG
CAGAACACTTCAAATTATGGGTAAAGTACAAGACAGGATGAAGAAATCAG
GCAAATATTGGATCAGGCTGGTTAAGATGATATTTAAAATTTCTTTGGTG
GTATTCTTGTTGTCTTTACACAATGTTGGATGTGATGTGTTACATGAAGT
CAAGCAATACGAAGAATTGAAAGCACTTTTAAGCTTGGATGACGCAGTTG
GTGTATTTTATTATACTCACAATGCCGCCTCAGAATTCAAAAGATGAAAG
GGAAAGTGGTGCAACCTTACTCTTTATCAGAACTGTTCAGCGTTTCCAGC
TTTGAAGCACAGGTTATCAGGTCTGTATACATATAAGTCAATTGTGCTGC
TCCCACAATCCAAGATCAAAAATTGCCAGAATGTGAAAAGAAGAGATCTT
TTGTTGCTTCTAAGCAGAACACTTCAAATTATGGGTAAAGTACAAGACAG
GATGAAGAAATCAGGCAAATATTGGATCAGGCTGGTTAAGATGATATTTA
AAATTTCTTTGGTGGTATTCTTGTTGTCTTTACACAATGTTGGATGTGAT
GTGTTACATGAAGTCAAGCAATACGAAGAATTGAAAGCACTTTTAAGCTT
GGATGACGCAGTTGGTGTATTTTATTATACTCACAATGCCGCCTCAGAAT
TCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016802XLOC_016802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029442-exon-sc0000748-1575043694:2535..3010TCONS_00029442-exon-sc0000748-1575043694:2535..3010Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1575043694:1353..1429TCONS_00029442-exon-sc0000748-1575043694:1353..1429Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1575043694:511..587TCONS_00029442-exon-sc0000748-1575043694:511..587Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1575043694:117..275TCONS_00029442-exon-sc0000748-1575043694:117..275Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1510915933:2535..3010TCONS_00029442-exon-sc0000748-1510915933:2535..3010Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1510915933:1353..1429TCONS_00029442-exon-sc0000748-1510915933:1353..1429Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1510915933:511..587TCONS_00029442-exon-sc0000748-1510915933:511..587Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1510915933:117..275TCONS_00029442-exon-sc0000748-1510915933:117..275Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1491911889:2535..3010TCONS_00029442-exon-sc0000748-1491911889:2535..3010Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1491911889:1353..1429TCONS_00029442-exon-sc0000748-1491911889:1353..1429Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1491911889:511..587TCONS_00029442-exon-sc0000748-1491911889:511..587Clytia hemisphaericaexon
TCONS_00029442-exon-sc0000748-1491911889:117..275TCONS_00029442-exon-sc0000748-1491911889:117..275Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029442-proteinTCONS_00029442-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000748supercontigsc0000748:117..3010 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.59134	7.70696	2.65054	2.83188	4.1689	2.92705	9.26544	10.6161	11.7584	12.4222	10.9502	13.4812	16.0456	15.6642	14.2698	15.516	13.8265	12.7034	20.0755	18.5359	14.3864	12.9287	7.89987	10.0849	7.3438	7.7131	7.80382	8.70879	8.42845	5.80703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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