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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029444 ID=TCONS_00029444|Name=TCONS_00029444|organism=Clytia hemisphaerica|type=transcript|length=1801bp
CAATCAGATGACATAGGAAAAAGCTAAACACcagtaaaaacaaaagaaat
atagaATTAACGACCAAAGATAAATCAACACCATCTTTGGAGTGTTAAGT
GGTATGGCTAGTAACATTATCCAGTACTTTGATTATGGAACTAACATGAA
TCCAGAAAAAATGAGCTTATGTCAGATACCGTTTTCAGAACGAAGACCTG
CAAAGCTTGAAAATTACGAATTTGTTATGAACCATCGGCGAATGAATGGT
ACAGCCGGAGTTAATATACGATACAATAAAGATTCAACTGTTTATGGTAT
ATTATACACTTGTACGTATGAGAGTATAGAGAGGCTGGATCGATACATGG
GATCTACATATTCAAGACAATTAATCAATGTTATTCCTAGAAAATGTTCG
GACCCAAATACACCTATACTGGTACAAGACTATGTCGATGAGCCCGTTTC
AGCTCACATTTATATTGGACTTGAAAATAGTGCGTCTAATGATATTAGTA
ATACTGTAATTGATATTAGTAAGGAATATTTAGAACACGTTTTATGTGGA
CGGGATATGTTACCGAAAGAATATGTAGATTTTTTAACGACTTTTCAACA
ACATACTGTTACGGTATGTCCTGGTGAGGAATACTTTTTGATAGATGCAG
CTAACGAAACGGAAGAGTGATTATTCAAGACATTACGTCACTATTACAAC
TGTTGATTGGTTTGTATTAACGTATTTGGTTAGAAATAAGGAGATAATTT
ACGTAAGGAAGAGTTGGAGATTCAGGATATGCATTGCTGCAATATCTTCT
AACACTACGTCACTTttacaacagctgattggttacgTATTGACGTATTG
ACGTATTAGATAGAAATAACCAGTAGAGTTGCACTATTTTGCGAAGTCGC
CACAGTGTATATCATTGATTGATATTGGTTTGAGTACTGGAAACTGATTA
TCTACCTGGTTAAGAAACGCAAGCAAAGAGATtgaattttagcaaaaata
ttgaatgttattttattttctgttcATGCGATTAGTATCGAGGGGCCAGT
GCAATCAAAATCGAGTGACGTCGCATTGCTGACCACTGTCTGACGTGGAT
TTTGATAACAATGGgcaacaaaattcaaaacaaagcgACTTCCAGAGACC
AGCTTGCCTATTCAATTAATATTGAGTGTAAGAAGGAATgagaaatggaa
attttttctttcaaatgattGAAATAAATTATATACACTTGAATTATATT
TAGAAAGTTATCGCGTCATCTTCCTCGATAACATTTTTATACGTTAAACG
TTAATTGTGGTATTAATGCATTACTTACTTGTGTTACTTGTGTGGTGTGG
GTGTTCGAGCAAAGTGCTCAGGTAGGATTCTTGGTGCTCTCCTGCACCCA
GTATATCCATGAATTTGGGGTTCATCCGGAATCGACTTTAAGTGAGTGTC
AAgggcatttttaaatttttcagttgAAGTGTTTTTTAAGTTTCTTATAC
TCTTTGGCATTGCATTGAATAGTTTTGCACCTTGTACAGAAAGAGTGCAA
TCTCTAAGCTTGGATGTTCGATTCTTGGAGATAGACAGTTGGCACAGCCG
GCCGAGCCGGGGATTTTCGTAAGCTTTTATACTGCTATTCACGTTAGGTA
CTATCCCTTCTAACACCTTCCAAACATAGGTAATGCGATAGAGTTCCCTT
CTCCTTTGAAGGGAATAGATTTTGGATTGCTTGAGACACTCCCAATAATT
GTTTGAGGTGCCTTTTATCCTTCTTAGAAAGGATTTTTGAATGTCTTCAA
G Run BLAST on NCBI transcript from alignment at sc0000748:29214..36695- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029444 ID=TCONS_00029444|Name=TCONS_00029444|organism=Clytia hemisphaerica|type=transcript|length=7482bp|location=Sequence derived from alignment at sc0000748:29214..36695- (Clytia hemisphaerica)
CAATCAGATGACATAGGAAAAAGGTAAACAACTGATGAATCATCTTTGTA
AAATTGTTTTTCCTAAAATTGAACTTCAGTGATTTTCAAATGGGCCATCC
CAGAAAATTTTTGTTACCCCATTGTCGGACGACATGCATTTTTTAGTTTT
TTTCTAGCCTCGGAAATAATTTTTCTTTTCCGGTAGTGGTCGGAAATTCC
GATGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTATTCGG
CGCTATTACGTCACTTTCGTTTTCGACCCCATTCATTTGCCAATGGTCGC
AAGTGAAAAATACCCCGTTCATTTGCCAGGATGTGCCTGACTGCCGGACT
TAAGGAAGTCGGATGTCCGGTGTCGAAGTAGGATATTTTTTTTCACCGGA
CAATCAAAACATGCGTCCGGTGTTTCTTAATTTTCTGTTTTATAAATGTC
GTCCGGCGTCNTGCGAGAGGAGCTGCGTAGTTGTATTTTAATGACCAGCC
AGGTCTTTCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTA
CCTAATCTCACGGTATGCAATGCACGCAAAATNGACTGACACCGGACTTA
TCGCGTCCGGTGTAGCGAAAGGATACTTTTTGCCACCGGACAAATACACC
GGACAGTCCGGTGCGTCGGCAGGGTCCTGCAAAATTAGGAGAAAAGGCAA
TTTATTTAACAGTCTAATTAGGCATTTTACTAATTTGAAAAGCCTTTCCT
AATGTCAGCTGCTGTGTGGTTCCTTGCTTTACTTGCAAATCATCAATATT
AACAAATACATTACCTTAATAATCCTATGTCTTTCGTTAAATATCTCTAA
GCTTGGAGCGTTCGCTGGGCTGTTGCGCTGGCTGACTGGGATGGTCGTCA
GGAGCTGCTTATTTCCGCTGTTTATACTTCCCGATTTAATTTGAATCCTA
CTTCTCAATAAACGCTTCTGAAGATTGGCAGAAAATCTAATATAATCTTC
GAAATCAAAAAATGAGATTTAGAGTAAGAGACTAGGTTATCTAGTTTTCC
GGCATCTTAGGTTGTGTTCCGAATAATTTTAAAGATGGCGGCAAAAAGTT
TGAAAGTCAAATGTCAAAGGAAAGGCTGGGAAGGAAGGCAAGGATCTTCC
CACATTTTAAACTGTATTGCCAGTCAGTGAGGTGTACTAAAAAATAAGGA
AGAACCAATCAGATGACATAGGAAAAAGGTAAACAACTGATGAATCATCT
TTGTAAAATTGTTTTTCCTAAAATTGAACTTCAGTGATTTTCAAATGGGC
CATCCCAGAAAATTTTTGTTACCCCATTGTCGGACGACATGCATTTTTTA
GTNAGTGATTTTCAAATGGGCCATCCCAGAAAATTTTTGTTACTCCCCAT
CGGACGACATTCATTTTTTAGTTTTTTCTAGCCTCGGAAATAATTTTTCT
TTTCCGGTAGTGGTCGGAAATTCCGATGAAAATCCATGTACTTTTGCAAA
ATGCATCGGAAATTCCACTCTTTTTTGCCTTTTTTAATTCAATTACTACC
TTGGAAATTCATACATTTTCTTCTCTCACCTTTTGGAAATTTCGAATTTT
GGTGAAAACTTTTGCCCTTGGAAATCCTGTGTAGTCCGCCCCCCTGTTAC
AGACAAATTCTGGAATGGCCCAATGTTGAAGACCTTTTTTTTCAGCAAAA
TTGTGTGAAACATTATCATTCTAATAGTCTAATGTGTGAGAATGCACGAT
TTTATTTTAACACTCAATGCATGATAAGTGGCACCTCTGTATTAACCTAT
CTGGACCCCTTCCTTCCTTTGTGTCCTTATCAGCTCAACCGATAAGAGCC
TCCCCTGCCTGCTGCGCCTGCAACAGGACCCTTTGATGCTCCGGAAACTT
CCGGAGATTTCCGGAGCAGCTAAAAAAACACTATTTTGCTTCCAGAGTAA
GTGATTCTTTACACAGTTCCGGAGTTCCGGTGCAGACCAATCGCCGAAAA
TCGTGGAAGTGCTCCGAAATTTTCTGGTGTTTCGGGGGAGCACAAAAAAA
CAGCTTTTTTTGCTCCAGAAGTTTCCAGAGCGCCAGGAGGGTCCTCCTGC
AACTCGTAACCACAGAAAATAAAACGTTCATCTTCTTTATTCATCATCAT
CAGATCATGGTCTTTAGATTAGATTATCACTCACTTTTATACTAAGCTCT
GTTTATGTGACGAAAGCATCCAGCAAGGACTTTTTTCAAACATCTGTTTC
CCCCCGTGCATGGTTACTGGAGAATAGACCTTTTTTCAAAGAGGCCACCC
AGGACGTCCTCTTTGAAAAAAGGTCTATTCGGTCTGCTAGAGCCAGAAGT
TTCAAAAAAAATTTATTTCTAGAATAAGATATGTTTCTCCTCACAAACCT
TAACCTAAAAAAAAACTTTAATCTTAAAACTGTCCTCCTTCCTTGTCTTT
TCTGATATGTTTCTACAATTTCCTGATTTTGATCAGTTTTTCCAAGGTAT
TGGATCTCCCTTCTTAGAATCCTAGAAATCTTTCTCTGTTTTACCGCGCT
TGTTTGTCAGTGTAGACCTAACTCTTCATACAAAAATTACGGTAAACACG
GACTTTGTACCCTGTGCTGCACACCAGCACTAAAGCTGAAGTCCCAGAAA
AGCGGGATAGCCACATAGAAGATCTTTCAAATTCAGTATGTGTATAGAGC
AGTAAAAAATACAACTTTTCTATATTTCCTTTTTTTGCAAAAGTTCTAGA
AATGAAAATAAAAGGGTAATGATAATTGAATACTATCCACTGATGATCCG
AGGCGCCATCGTAAAGCTAGAATCGCTTCTTGTACTCTTCGCTTGAGAAA
ATGATCGACAGATTAAATTTAGTTTTGTTTTGTTTTGACTGTGATGGTGT
AGTTGCTGGAATGTTTACAAGACTCTTGACAGAAAATCTTTTGTTTTATT
GTCAATGATGACAGTACCGTTATTAATTTTGTTAGATCTGATATATTGAT
GTTTGTAAGTGCACTTTATACTTTTGATTCCCATTGAAGAATCATATTCT
GGTTTTCATGTTATTAGATGCTGTTTTAGAGCTTTAGAGCTACACTGTTT
GTGATTGATATCTGTTTTCCCTTAGAAAATACACTTTGTTTCCAGTGCAA
TGTCACATTTTTGAGAATGCTAAGTCTTATAATGTCCGATCAGGGTTGAT
TTAGCTTGAAAATTATGATTTTTGGGTTAGACAACACATGAAGCTATTTG
GGTCGGACAATGTCCGATGTCCGACCGTTATTTTGAGCCATGTTCTTCGC
TAGAAAAGTGGCAAAGGAATCTTAGTGCGGATATAGGAATCTTATACGAA
ACGACAGTAGCATGACTTGTCTTCATTCTAGCTTAATGTACAATGCAGAT
AAGAAAAGTCTGCTGTTTGAAGGTGATGAGAGTTACCCCTCATTTATGAA
AAAAACCCTAATTGACGGTGTATCAGGATTAGAAACAAGGCTAATCTTAC
CTCTTTTTACTCTTTCCCCAACAACAATACAATGCTAACAAGTTGACACA
ATGCATTGACATAAAGACAAGTAACCCCAAGAAATTTATATCAAATTTTG
ATAAAGAGGTTTCTTCTACTGATTACTTCTTGGCGCCCCTTCACAGACTA
TTTATCAAATTTCCACCAATGAAGCTGCATTTCACAACACCCTTTTTCTT
GCTTTCAGTTTTGGCAGATGATTTTGAAAATCATACTCGTTTTGGTTGAA
AATTAATGTTGGGCTCCCTGCCATATGCATAAATTTGGCAAGAATATTCC
TAAAACAGGCAATTTAAAGTCTATTCAGATATAATTGGCAGTGGAAACAA
GAGCGCCTGTAACTTTTGATACCGTAAATCCTCGAATAAGCGCCAATTTT
TCAGGCTCTAAGGCCAGGGGGCGCTTATTCAAGCAGGGCGCTTATTTGAG
CGGGGCGCTTATTTGAACAGGGCGCTTATTTTTTTATTTCAGAAATTCGT
ATATCAACAAATTCGGAATCTGCTTAAACTTAACTGTTTCAAAGGGTTGA
TTTTTCAGAAAAGGATGAATAAAAGAAAAATTGGAAAAATCCAATTGACT
CTTTCTTTTTAAGACACAAGTATCTACTTAACATCTTATTCAATCAATAA
CAATAGTCAAATAAGCGCCCCTCCCTGGAGAGGGCGCTAATGCAAAGGGG
GCGCTTATTCGAGCGGGGCGCTTATAATATTATTTTAACTAAAAGGNCAT
CTTATTCAATCAATAACAATAGTCAAATAAGCGCCCCTCCCTGGAGAGGG
CGCTAATTCAAAGGGGGCGCTTATTCGAGCGGGGCGCTTATAATATTATT
TTAACTAAAAGGGGGGCGCTTATTCGAGCGGGGCACTTATTCAAGCAGGG
TGCTTATTCAAGGATTTACGTTAGTCAAATATAATTGTGGAAACCTTTTT
TGCATGTTTTAGAGAATCAAAAGCGCTATATTTGAATGTATTTTTGGTTA
AAAAATTCGTGATTTTAGCGGTTAAATTGAGCTTTTTTTCTATTTATGTT
ACAATGTTCACACCAGTGGTATTTCAACCTTAGGTAAAGTAGGTTGTCAA
ATTTCAAGGCAAACGGAAAAGTCCTTAGGAAGATATGAGACCCGAAATAC
ATTATTGTAGCACTTTTCTGTGAAATATCGTAACATCTCCAACTTTTACT
AAATGGGGGTTATGTTATCTTTTTTGAACAGTGCAATTAATAAAAGTTGG
AAAGTGTTAAGTGTTGATGCATTGGTATTATTGGTATCATTGATCGTTTC
GAAACAAAGTGAAATCACAATTTGATTGTTTTTATTGAGACGATAAGCAT
ATTGAACTTATATTGTCTGTGTTATTTTGAAATCATCAAAGAACTTTCTA
ATTCCCAAAACACTAAGCACAGTCTGGTCATTAAAAAGAGATGGTAAAAT
GTGTTACNAATCATCAAAGAACTTTGCTAATTCCCAAAACACTAAGCACA
GTCTGGTCATTAAAGAGATAGTAAAATGTGTTATGATCGAAAAACTGTTT
TATCATCACTACCCCCTTTTTTATTAAAAATTTGGAGATTTGAAGTTTTA
TAGAAAAGTGCTACCAAGAGGTATTTCGGGTCCCATATCTTCCGAAGGAC
TTTTCTGTTTGCCCTAAAATTTGACAACCTTCTTAGCCTAAGGTTGAACT
ACCACTGGGTTAAAATGAACGTTGCAGCATAAATAGAAAAATAGCTCAGT
TTTTGCAATCGCATATTTAAGTTAACCGCCAAAAATACATTCAAATATTG
CGCTTTTGATTCTCTAAAATAAGTAAACAAAATTTGCACTATTATATTTG
ACTATCAAAAGTTACAGGCATTCTTGTTTCCACTGCCAATTATGTCTGGA
TACACTTTTAATGTTGTGTTTCTATTGTCTTTTAATTCAATATTTACTTT
TAAGCTAAACACCAGTAAAAACAAAAGAAATATAGAATTAACGACCAAAG
ATAAATCAACACCATCTTTGGAGTGTTAAGTGGTATGGCTAGTAACATTA
TCCAGTACTTTGATTATGGAACTAACATGAATCCAGAAAAAATGAGCTTA
TGTCAGATACCGTTTTCAGAACGAAGACCTGCAAAGCTTGAAAATTACGA
ATTTGTTATGAACCATCGGCGAATGAATGGTACAGCCGGAGTTAATATAC
GATACAATAAAGATTCAACTGTTTATGGTATATTATACACTTGTACGTAT
GAGAGTATAGAGAGGCTGGATCGATACATGGGATCTACATATTCAAGACA
ATTAATCAATGTTATTCCTAGAAAATGTTCGGACCCAAATACACCTATAC
TGGTACAAGACTATGTCGATGAGCCCGTTTCAGCTCACATTTATATTGGA
CTTGAAAATAGTGCGTCTAATGATATTAGTAATACTGTAATTGATATTAG
TAAGGAATATTTAGAACACGTTTTATGTGGACGGGATATGTTACCGAAAG
AATATGTAGATTTTTTAACGACTTTTCAACAACATACTGTTACGGTATGT
CCTGGTGAGGAATACTTTTTGATAGATGCAGCTAACGAAACGGAAGAGTG
ATTATTCAAGACATTACGTCACTATTACAACTGTTGATTGGTTTGTATTA
ACGTATTTGGTTAGAAATAAGGAGATAATTTACGTAAGGAAGAGTTGGAG
ATTCAGGATATGCATTGCTGCAATATCTTCTAACACTACGTCACTTTTAC
AACAGCTGATTGGTTACGTATTGACGTATTGACGTATTAGATAGAAATAA
CCAGTAGAGTTGCACTATTTTGCGAAGTCGCCACAGTGTATATCATTGAT
TGATATTGGTTTGAGTACTGGAAACTGATTATCTACCTGGTTAAGAAACG
CAAGCAAAGAGATTGAATTTTAGCAAAAATATTGAATGTTATTTTATTTT
CTGTTCATGCGATTAGTATCGAGGGGCCAGTGCAATCAAAATCGAGTGAC
GTCGCATTGCTGACCACTGTCTGACGTGGATTTTGATAACAATGGGCAAC
AAAATTCAAAACAAAGCGACTTCCAGAGACCAGCTTGCCTATTCAATTAA
TATTGAGTGTAAGAAGGAATGAGAAATGGAAATTTTTTCTTTCAAATGAT
TGAAATAAATTATATACACTTGAATTATATTTAGAAAGTTATCGCGTCAT
CTTCCTCGATAACATTTTTATACGTTAAACGTTAATTGTGGTATTAATGC
ATTACTTACTTGTGTTACTTGTGTGGTGTGGGTGTTCGAGCAAAGTGCTC
AGGTAGGATTCTTGGTGCTCTCCTGCACCCAGTATATCCATGAATTTGGG
GTTCATCCGGAATCGACTTTAAGTGAGTGTCAAGGGCATTTTTAAATTTT
TCAGTTGAAGTGTTTTTTAAGTTTCTTATACTCTTTGGCATTGCATTGAA
TAGTTTTGCACCTTGTACAGAAAGAGTGCAATCTCTAAGCTTGGATGTTC
GATTCTTGGAGATAGACAGTTGGCACAGCCGGCCGAGCCGGGGATTTTCG
TAAGCTTTTATACTGCTATTCACGTTAGGTACTATCCCTTCTAACACCTT
CCAAACATAGGTAATGCGATAGAGTTCCCTTCTCCTTTGAAGGGAATAGA
TTTTGGATTGCTTGAGACACTCCCAATAATTGTTTGAGGTGCCTTTTATC
CTTCTTAGAAAGGATTTTTGAATGTCTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029444-exon-sc0000748-1575043694:36673..36695 | TCONS_00029444-exon-sc0000748-1575043694:36673..36695 | Clytia hemisphaerica | exon |
| TCONS_00029444-exon-sc0000748-1575043694:29214..30991 | TCONS_00029444-exon-sc0000748-1575043694:29214..30991 | Clytia hemisphaerica | exon |
| TCONS_00029444-exon-sc0000748-1510915933:36673..36695 | TCONS_00029444-exon-sc0000748-1510915933:36673..36695 | Clytia hemisphaerica | exon |
| TCONS_00029444-exon-sc0000748-1510915933:29214..30991 | TCONS_00029444-exon-sc0000748-1510915933:29214..30991 | Clytia hemisphaerica | exon |
| TCONS_00029444-exon-sc0000748-1491911889:36673..36695 | TCONS_00029444-exon-sc0000748-1491911889:36673..36695 | Clytia hemisphaerica | exon |
| TCONS_00029444-exon-sc0000748-1491911889:29214..30991 | TCONS_00029444-exon-sc0000748-1491911889:29214..30991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000748 | supercontig | sc0000748:29214..36695 - |
Blast
The following BLAST results are available for this feature:
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