TCONS_00029450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029450
Unique NameTCONS_00029450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029450 ID=TCONS_00029450|Name=TCONS_00029450|organism=Clytia hemisphaerica|type=transcript|length=1710bp
GGCTGGATTACATAAAGCGTTCAGACTAATTTGAGTTGCTTTTCACGTct
agaaaataaatatatctATCTTGAAGATCTTAATCACAAGACCGCAAAAT
GGCTACAGAAGCGAAAGACAAATTTTTCTCTGGCTACGAAGAGGCACGGC
AAGCGGGCAAAATAATCGATTATTACAACGATAAGGCAAGTGTGTACAAC
GAAGCACTTGAACAAGCAGGATATACAGACACTACCCTATTTTGTTCCAA
TCTCCTAAAGGAATATCTTTCTGCAGAAAGAGGTGAGAACAAGATTGCTC
AGCTGGAAATTCTCGATTTGGGTTGCGGTTCAGGATTAACAGGCGTTGCC
CTACAGAAAGTAGGGTTCAAACTGGTCGACGGTGTAGACCCAGCTGACAA
AATGTTACAGGTGGCAAGAGAGAAATCGGTGTATAGAAATCTCTCCAACG
GTATCATCACAGATACAGAAAAATTGAGTTGCTTCCAAGACGAGTTGTAT
GATGGCTTGTTATGTGGTGGATGTTTCACTGTGGGTCATATTAAGTTCAA
TAACGGTATGCCAGAAGTTCTGAGAGTTCTCAGAAAAGGTGGAGTAGCCG
TCTATACCATTTCCTCTAAAATGGATAGCGCAGTAATTTTGAATGAACAT
ATGCCGTTTTTTCTTCGCAAGCAATGCGAGATGCTCCGCGTAGAGAAGAG
ATTTTATTATTCAGGCAGCAACGATAAGAGTTATTGTGACGTGTATGTCA
TCAAGAAGTTGTAAACTGTAAAATAGAATACTtggaaattgtttttaaat
tctctttgcttttagttttaatgcttttttgtagaaaattaTACTACGGA
TATGACTTTTTTTGTGTTGCTTTTTGTAATGctaaatgaatttaaaatac
aTTCTGGGTGTTTTACCACTGACGGCTTAAGCTGACTGGGTTAATGTAAC
GTAACTTTTTCATAAAAGGATGAATAGCCCGAActattcatataattttt
ggatgaaaagagatggttgcacgttaattaaaaataatttcatctcCCAC
AGCAAATCTGTTGTATTTCCTGATCCGCATATCCTTGCTCTTTTATTCTC
TCATATATGCCCTCGACCATGTATTAATGGATTAGAAAATGtgtgaaaaa
tacaaaagattcAACGATTTTACTCCTGTGTTGCTTTGGGAaatacaata
tttttctgaaaagaaaaaattaactttcaaccatctcttttcatccaaaa
attatatgaatagTTTGGGCTATTCAGGGGGGGGgtggtttgtaggggtt
cgaaataccgttttcccgtcaaaatttttgctgaatcccgaaatcccgaa
aattgaaaaaataataacaccgtcacaccggcttgtacagggcaaaaatg
taatcccgtcacaccgtaaaagtacaaaccccccccctaTTCATCCTTTT
ATGAAAAAGTTACATTAACCCAGTTAGCTTCAATCAGCCGTCAGTGGAAA
ACACCCTCTCCTTTTAAAATGCAGTGAAATGATTGATGGTTTTGTTGATA
TTAGAACTACACGTTCTGTTTTacgagaacatccaaaatttttgaagctt
tcaaatgttcttaactttcttagcttcttaacatgttctaattttcgcaa
atttttgagaattatgtccatttttctaagaaatcgggtgttttgtagtc
ctcaaagcct
Run BLAST on NCBI

transcript from alignment at sc0000748:80825..82534-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029450 ID=TCONS_00029450|Name=TCONS_00029450|organism=Clytia hemisphaerica|type=transcript|length=1710bp|location=Sequence derived from alignment at sc0000748:80825..82534- (Clytia hemisphaerica)
GGCTGGATTACATAAAGCGTTCAGACTAATTTGAGTTGCTTTTCACGTCT
AGAAAATAAATATATCTATCTTGAAGATCTTAATCACAAGACCGCAAAAT
GGCTACAGAAGCGAAAGACAAATTTTTCTCTGGCTACGAAGAGGCACGGC
AAGCGGGCAAAATAATCGATTATTACAACGATAAGGCAAGTGTGTACAAC
GAAGCACTTGAACAAGCAGGATATACAGACACTACCCTATTTTGTTCCAA
TCTCCTAAAGGAATATCTTTCTGCAGAAAGAGGTGAGAACAAGATTGCTC
AGCTGGAAATTCTCGATTTGGGTTGCGGTTCAGGATTAACAGGCGTTGCC
CTACAGAAAGTAGGGTTCAAACTGGTCGACGGTGTAGACCCAGCTGACAA
AATGTTACAGGTGGCAAGAGAGAAATCGGTGTATAGAAATCTCTCCAACG
GTATCATCACAGATACAGAAAAATTGAGTTGCTTCCAAGACGAGTTGTAT
GATGGCTTGTTATGTGGTGGATGTTTCACTGTGGGTCATATTAAGTTCAA
TAACGGTATGCCAGAAGTTCTGAGAGTTCTCAGAAAAGGTGGAGTAGCCG
TCTATACCATTTCCTCTAAAATGGATAGCGCAGTAATTTTGAATGAACAT
ATGCCGTTTTTTCTTCGCAAGCAATGCGAGATGCTCCGCGTAGAGAAGAG
ATTTTATTATTCAGGCAGCAACGATAAGAGTTATTGTGACGTGTATGTCA
TCAAGAAGTTGTAAACTGTAAAATAGAATACTTGGAAATTGTTTTTAAAT
TCTCTTTGCTTTTAGTTTTAATGCTTTTTTGTAGAAAATTATACTACGGA
TATGACTTTTTTTGTGTTGCTTTTTGTAATGCTAAATGAATTTAAAATAC
ATTCTGGGTGTTTTACCACTGACGGCTTAAGCTGACTGGGTTAATGTAAC
GTAACTTTTTCATAAAAGGATGAATAGCCCGAACTATTCATATAATTTTT
GGATGAAAAGAGATGGTTGCACGTTAATTAAAAATAATTTCATCTCCCAC
AGCAAATCTGTTGTATTTCCTGATCCGCATATCCTTGCTCTTTTATTCTC
TCATATATGCCCTCGACCATGTATTAATGGATTAGAAAATGTGTGAAAAA
TACAAAAGATTCAACGATTTTACTCCTGTGTTGCTTTGGGAAATACAATA
TTTTTCTGAAAAGAAAAAATTAACTTTCAACCATCTCTTTTCATCCAAAA
ATTATATGAATAGTTTGGGCTATTCAGGGGGGGGGTGGTTTGTAGGGGTT
CGAAATACCGTTTTCCCGTCAAAATTTTTGCTGAATCCCGAAATCCCGAA
AATTGAAAAAATAATAACACCGTCACACCGGCTTGTACAGGGCAAAAATG
TAATCCCGTCACACCGTAAAAGTACAAACCCCCCCCCTATTCATCCTTTT
ATGAAAAAGTTACATTAACCCAGTTAGCTTCAATCAGCCGTCAGTGGAAA
ACACCCTCTCCTTTTAAAATGCAGTGAAATGATTGATGGTTTTGTTGATA
TTAGAACTACACGTTCTGTTTTACGAGAACATCCAAAATTTTTGAAGCTT
TCAAATGTTCTTAACTTTCTTAGCTTCTTAACATGTTCTAATTTTCGCAA
ATTTTTGAGAATTATGTCCATTTTTCTAAGAAATCGGGTGTTTTGTAGTC
CTCAAAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016805XLOC_016805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029450-exon-sc0000748-1575043694:80825..82534TCONS_00029450-exon-sc0000748-1575043694:80825..82534Clytia hemisphaericaexon
TCONS_00029450-exon-sc0000748-1510915933:80825..82534TCONS_00029450-exon-sc0000748-1510915933:80825..82534Clytia hemisphaericaexon
TCONS_00029450-exon-sc0000748-1491911889:80825..82534TCONS_00029450-exon-sc0000748-1491911889:80825..82534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000748supercontigsc0000748:80825..82534 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.600801	0.309889	0.855511	0.760699	1.10698	0.501293	7.84902	8.33776	3.90765	3.81052	4.99574	3.07428	4.65925	4.66086	8.00438	8.94084	4.04232	3.634	5.41913	3.81477	10.9153	11.4846	3.08003	2.93529	3.94011	3.96618	2.44807	2.67637	2.33651	2.07407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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