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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029474 ID=TCONS_00029474|Name=TCONS_00029474|organism=Clytia hemisphaerica|type=transcript|length=2420bpRun BLAST on NCBI transcript from alignment at sc0000749:90011..116260+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029474 ID=TCONS_00029474|Name=TCONS_00029474|organism=Clytia hemisphaerica|type=transcript|length=26250bp|location=Sequence derived from alignment at sc0000749:90011..116260+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029474 vs. Swiss-Prot (Human)
Match: EIF3C (Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1) HSP 1 Score: 446.817 bits (1148), Expect = 1.970e-142 Identity = 228/460 (49.57%), Postives = 308/460 (66.96%), Query Frame = 2
Query: 1058 LFPKDTEINHQAVLKKFHEILAVRGKKGTDRSEQIEYFSELRKISNQHELGEGIDLKLLFTIASAIMDSTSGADSALRQSLWVKLLDTIKEIFNAIQKNSEVVFEAR---EDENVEDKSRPYSLQEDPVTLLEKVDGEFNKILQHCDGHSPEYVAKLKDEIIIVQLIDQLLNLYETKMGDKVSDLCRIYLLRIEHTYYKLDVKI-LREITTQIMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIADVKLMDKLCKFVYT-NGADRIRTRAMLCQIFHHAKHDRWYEARDLMLISHLQETIQHSDILTQILFNRTMVQLGLCAFRHGMIREAHNALQDIQSTGRAKELLAQGLMMKN-QDRTPEQEKIEKRRMLPFHMHINLELIECVYLTSAMLLEIPYMAAHEFDYRRRLISKSFHYQLRMSDKQALVGPPESMREHIVAASKVMKKGDWKSC 2419
+F K TEI H V+KK +EIL RGKKGTDR+ QIE L +I+ ++ LGEG+ +K+ F I +++ D + ++ +W K LD I E+ + + N + E EN+ + +P ++ +TL+E++D EF KI+Q+ D HS EYV LKDE + +I+++ E K ++CRIYLLRI HTYYK D K R++T + E ++ E LM++LCK++Y + DRIRT A+LC I+HHA H RWY+ARDLML+SHLQ+ IQH+D QIL+NRTMVQLG+CAFR G+ ++AHNAL DIQS+GRAKELL QGL++++ Q+R EQEK+E+RR +PFH+HINLEL+ECVYL SAMLLEIPYMAAHE D RRR+ISK FH+QLR+ ++Q L+GPPESMREH+VAASK MK GDWK+C
Sbjct: 317 MFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVCAIIERVQRYLEEK--GTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPP----------------------EGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTC 752 HSP 2 Score: 138.272 bits (347), Expect = 2.279e-33 Identity = 74/128 (57.81%), Postives = 102/128 (79.69%), Query Frame = 2
Query: 311 FSDDEDDTKRVVRSAKDKRFDILQTSIKNMRNSMKINDLSKIQTEYENLTRDYEKSKTVIAKEGIPNFFIKILGDLEDYLQQQWEDTNGRXXXXXXXXXXXXXXRQKLRKYNKDFETKIKEYKENPSK 694
S+DE+DTKRVVRSAKDKRF+ L I+ +RN+MKI D++K E+E L + Y K+K+++ KEG+P F+I+IL DLEDYL + WED G+KK++K NAKAL++LRQK+RKYN+DFE+ I YK+NP +
Sbjct: 38 LSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQ 165 The following BLAST results are available for this feature:
BLAST of TCONS_00029474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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