TCONS_00029518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029518
Unique NameTCONS_00029518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029518 ID=TCONS_00029518|Name=TCONS_00029518|organism=Clytia hemisphaerica|type=transcript|length=237bp
aaattgaattcacCGGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAA
CCAGATAGTATTTACACCAGGTTTTGAgaatcaattattattattttgga
gacattattttcgattttgcaataagtttttgaaaaatgaaaacaaccat
tcaaaaattgaatttacgGGCGTTAGAACGAGTAAAGCGGAAAGGTAGAT
GAACACATGGTATTTACGCCAGGTTTTCGAGAATTAA
Run BLAST on NCBI

transcript from alignment at sc0000752:132679..132915

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029518 ID=TCONS_00029518|Name=TCONS_00029518|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at sc0000752:132679..132915 (Clytia hemisphaerica)
TTAATTCTCGAAAACCTGGCGTAAATACCATGTGTTCATCTACCTTTCCG
CTTTACTCGTTCTAACGCCcgtaaattcaatttttgaatggttgttttca
tttttcaaaaacttattgcaaaatcgaaaataatgtctccaaaataataa
taattgattcTCAAAACCTGGTGTAAATACTATCTGGTTCATATTCGCTT
TCCGCTTTATTCGTTCTAACGCCGgtgaattcaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016848XLOC_016848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029518-exon-sc0000752-1491911889:132679..132915TCONS_00029518-exon-sc0000752-1491911889:132679..132915Clytia hemisphaericaexon
TCONS_00029518-exon-sc0000752-1510915933:132679..132915TCONS_00029518-exon-sc0000752-1510915933:132679..132915Clytia hemisphaericaexon
TCONS_00029518-exon-sc0000752-1575043694:132679..132915TCONS_00029518-exon-sc0000752-1575043694:132679..132915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000752supercontigsc0000752:132679..132915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.0436	15.2994	3.98096	5.37294	0	0.589786	1.00507	5.06894	5.08923	2.86196	1.59574	2.15088	2.10508	6.47569	0	0	1.92134	2.49192	0	0	5.65654	5.14739	8.92325	8.53903	3.19222	2.90097	0	1.5426	5.38421	2.69371
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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