TCONS_00029529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029529
Unique NameTCONS_00029529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029529 ID=TCONS_00029529|Name=TCONS_00029529|organism=Clytia hemisphaerica|type=transcript|length=265bp
AGATTGCGGAGTCGTGAATTCTTTACAGTTGAAAGGTACAAAATGCACGC
CTTAACAGAGTCGGTATGGGAAGTTATAACATGGAAATCAAAGACGCCTT
ACGATGCCGCCAGTGATCAATACACTCGTATATTCATGCCAAAACTTTTC
ATCATCTCATCACTCGTAATGGGTTTCAGTTATTTCAACGATAAACTCAA
CTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGTACAAGAGA
CCTGTTGGATTCAAG
Run BLAST on NCBI

transcript from alignment at sc0000753:59191..60163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029529 ID=TCONS_00029529|Name=TCONS_00029529|organism=Clytia hemisphaerica|type=transcript|length=973bp|location=Sequence derived from alignment at sc0000753:59191..60163+ (Clytia hemisphaerica)
AGATTGCGGAGTCGTGAATTCTTTACAGTTGAAAGGTAAGTCATTggctt
tcaaactttttcaacctGATTTTCCTTtcttcccggggggggggcagctg
ggcaaaatgaccgacgggtatgtgcgggccctaagggtaccttttccaag
atgtttaaaatgcactgtaagggtcggaaaaaccaaagatgcactgtaag
ggtagaaatttcagaaaattcttgaaagatCGAGATATTTTgcccaaaaa
tgctagaattttgaccattttttgcacgaaaaggattgaaaatttggggg
aagatgcactctaagggtatgattttcatcgaattttgctgcactgtaag
gttgcaattttgaaagccaattttcggcccgcacataccgtcagtccgca
aagccagtgccccccccgggcctttctttaaaaatcaaaaagccGATACA
ATCCCATATCTCTAGACGATCCTATGGTCTACACAAGGTTACTTAAAAGT
GAATGATAAATTTGAGAAACATAGGTATGTCCACCCCAGTGTTTACTGTG
TTCCAAAATGTCGTTATTTCTTCCCGTATACCTCTGATAACGTGTCAACA
CTCCACCCATATATAGTTTCCCGCGTGTTTTGTACGTCATTAGCGATAAG
TAGATAATTTAATGAGATAAGGCTCGAATGGAAGATTGATCAGCAAAACA
ACTGTTAAAAGTATGAATGAATGTGAGCTTCAACTACTTTTAGGTACAAA
ATGCACGCCTTAACAGAGTCGGTATGGGAAGTTATAACATGGAAATCAAA
GACGCCTTACGATGCCGCCAGTGATCAATACACTCGTATATTCATGCCAA
AACTTTTCATCATCTCATCACTCGTAATGGGTTTCAGTTATTTCAACGAT
AAACTCAACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGT
ACAAGAGACCTGTTGGATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016852XLOC_016852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029529-exon-sc0000753-1491911889:59191..59225TCONS_00029529-exon-sc0000753-1491911889:59191..59225Clytia hemisphaericaexon
TCONS_00029529-exon-sc0000753-1510915933:59191..59225TCONS_00029529-exon-sc0000753-1510915933:59191..59225Clytia hemisphaericaexon
TCONS_00029529-exon-sc0000753-1575043694:59191..59225TCONS_00029529-exon-sc0000753-1575043694:59191..59225Clytia hemisphaericaexon
TCONS_00029529-exon-sc0000753-1491911889:59934..60163TCONS_00029529-exon-sc0000753-1491911889:59934..60163Clytia hemisphaericaexon
TCONS_00029529-exon-sc0000753-1510915933:59934..60163TCONS_00029529-exon-sc0000753-1510915933:59934..60163Clytia hemisphaericaexon
TCONS_00029529-exon-sc0000753-1575043694:59934..60163TCONS_00029529-exon-sc0000753-1575043694:59934..60163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000753supercontigsc0000753:59191..60163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.594098	0	0	0	0	0	0	0	0	0	0	5.90185	5.26299	0.345942	0	0	0.468767	13.9418	10.9831	0.58904	0.86194	0	0.635069	6.54106	4.58886	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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