TCONS_00029531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029531
Unique NameTCONS_00029531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029531 ID=TCONS_00029531|Name=TCONS_00029531|organism=Clytia hemisphaerica|type=transcript|length=1957bp
AATTTTCAGACAAATTTTGTTCATACCCCCGTACACACCGAGAAACACAC
CTATCTTATTTTAACGTGTAAACGGGCTTTAAGTACGAATTACGTAACTT
TCGGACTTTGAATTCACAGTTTCTTTCCGGAGCCTCCAAAGAAGGTCAAA
GTCCGCACATGGAATTTGCATAACCTACGAAAATGTGTTCACTTCGACAG
TAAAAATTCATCTTCANACAAAGATAGTTGAAAAAAACACTTTATGATTT
TGGTGCTTTACCTATTTGCTTGACACTTAAAAGTTTCACATTAAAAATCA
TATCCAGCTGAATCTCGAGCATCANCAAAGTCCGCACATGGAATTTGCAT
AACCTACGAAAATGTGTTCACTTCGACAGTAAAAATTCATCTTCAGAAAC
TTTCCAAACATTTTAGATTATCACATATTACATCTTAGACACAGAACTTT
AGACAAAATGAAACTTTGGACAAAAGAACATATATTCAGCCACCCATGGA
AAAATGTAACAGAGGCAGCCTGGAAAAAGTACCCAAATGAACACAACACC
AACGTCACTGCAATCGATGTGCTGGACAGGAAGGTTTCTGAAGATGGAAA
ACTGTCAACAACTAGGATATTTGGGTCACATTGGAACTTCCCTGCTCTCC
TAGCAACAGTTTTGGGACTGCCTGAAATGTGTTACGCAGTTGAACACTCA
GAGGTTGACCTTAAAGAACAGAAAATGACATTGAAGATGGtcaattatac
atttttgggaATCTTAGCTGTTGAGGAGACACTTGTTTatcaaaaagaca
aagaaaatccTAATACAACATGTTTAACTCAAGATGCAAAGATCAGTGTA
CAAGGAATTTCATTCTCTGGCTATTTCGAAGACCTAGTCGTTTCAAACTA
TGATGTCAATTCTGTCAAAGGACGTACCGCTATTGAACAAGTCGTTAACA
AGATCAAAATAGAGAACATACTTGATACCGTCAAAGAAGAACTTTGTGAA
TTGAAATTAGACGTTGATAGTGCTACCACTAAATTAGATAACGAATTTCA
CGTCACTGAAAAATTACAAGCTCTAACCAAGGACTTAGACAATGCTACTG
ATTTGATAAACACGGAACTCAGCAAATTTTCTAGTTATTTGAGTGAGGAA
TTTCACCAACTTGTAGAACGTTTATCAACTGAACTTGACCAGATAACTGT
ACGCGTTGGACATATTGATACTAATGCTGGTGTTGTTGAATCGCAGAGGA
AAATTAATTTAACTGATGCCGTTAAAAATGCTGGTATTGGAGTAAAATGA
TACTTTAAACACTTATATAATTAGGATATTTTGATGGTTTGAATGAGTTG
GAGAAATGGCATTGTTCCTTAGTATTCGGTGAATAAATGGATTATTTATT
AGATGTAGCTTTGATACAAAGGCTGGCTTTACCCTTGAAGAAATCtggga
aaattcaaaaatactagcaaaGTGTGAACAGATAACCTTGGCACTTGGAC
AGTTTAATATCCCACCATGGGCATTTACATACAGCTATCTGTCATAAAAT
GTTACacaatatttcaaataaaaacagaaaaatataaattgtttATCATA
AATTATGCAACATAACTCTTATTAGATCAATTGATTCGAGTTTCACAGTg
atgttttttaacttttaatacTATTTATTACATAACATTTCCAAAATTAT
TATGTTGTAGAGTAAGCACTGTGTAATAAAACCCTTAGACAcagaactaa
aaaaaaaagtaagatCAATAATCTATCATGTTTAATTTTATTACCTTATT
CATTAGTTATATTATGATTATGAGTTTATCCTTCTATGCAAAGGTTATGT
AATCAGCTCTGATTGAGTCACNGATCATATTATATTATGATTATGAGTTT
ATCCTTCTATGCAAAGGTTATATGTAATCAGCTCTGATTGAGTCACATCA
ATCAGCT
Run BLAST on NCBI

protein sequence of TCONS_00029531-protein

>TCONS_00029531-protein ID=TCONS_00029531-protein|Name=TCONS_00029531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MKLWTKEHIFSHPWKNVTEAAWKKYPNEHNTNVTAIDVLDRKVSEDGKLS
TTRIFGSHWNFPALLATVLGLPEMCYAVEHSEVDLKEQKMTLKMVNYTFL
GILAVEETLVYQKDKENPNTTCLTQDAKISVQGISFSGYFEDLVVSNYDV
NSVKGRTAIEQVVNKIKIENILDTVKEELCELKLDVDSATTKLDNEFHVT
EKLQALTKDLDNATDLINTELSKFSSYLSEEFHQLVERLSTELDQITVRV
GHIDTNAGVVESQRKINLTDAVKNAGIGVK
Run BLAST on NCBI

transcript from alignment at sc0000753:73536..81735+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029531 ID=TCONS_00029531|Name=TCONS_00029531|organism=Clytia hemisphaerica|type=transcript|length=8200bp|location=Sequence derived from alignment at sc0000753:73536..81735+ (Clytia hemisphaerica)
AATTTTCAGACAAATTTTGTTCATACCCCCGTACACACCGAGAAACACAC
CTATCTTATTTTAACGTGTAAACGGGCTTTAAGTACGAATTACGTAACTT
TCGGACTTTGAATTCACAGTTTCTTTCCGGAGCCTCCAAAGAAGGTCAAA
GTCCGCACATGGAATTTGCATAACCTACGAAAATGTGTTCACTTCGACAG
TAAAAATTCATCTTCANACAAAGATAGTTGAAAAAAACACTTTATGATTT
TGGTGCTTTACCTATTTGCTTGACACTTAAAAGTTTCACATTAAAAATCA
TATCCAGCTGAATCTCGAGCATCANCAAAGTCCGCACATGGAATTTGCAT
AACCTACGAAAATGTGTTCACTTCGACAGTAAAAATTCATCTTCAGAAAC
TTTCCAAACATTTTAGATTATCACATATTACATCTTAGACACAGAACTTT
AGACAAAATGAAACTTTGGACAAAAGAACATATATTCAGgtaaatatttt
acattttacacAAACTCAACAGAACCCTTTCGTATTGAAAAGTTTGTTTC
TTTTGCCGTTTATTTTTGATTGGGTTAAACTCTTCTGGTCTGCAAGCTAT
AAAATAATGCTGGCTAGAATGCAAAAACGGGTAAATGGCTACCggaagtt
ggtctaatatcgacatcccttatctaattccgacacccttgacaggaata
atatggaaagcttgaatcgctgattgaaaaaggattattcctctctgacc
actaagcaaaatAAAACAGTTTCATCCTTTATCAATTTCAGatgataaaa
agggtgttggaattagaggaggggtgtcgtcaacgcgacattagaccaag
ttacggtatagGGTTGTCGGGAAACTTGCCTCAGTGCACagcagtggagg
caaacatacATAGgcttcaaatgaatgacctgtgggcaaaattattttaa
agggaacCAGAGACCACCTTGATTTCAAAAGGATATCATTAGGGAGGGga
cttagaaaaaaacaattagtggcatatgtacaaaagctgccaaattatat
aaaaagaagaaaaaaatcaaaaattttgaccgggGACCCTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGTTTAGGTATACAAGTTGAGTTTAATC
CATAGACCATGATTTATGGCACCTTTAAAGTTTACATTTGCAGGATGCAG
AATGAGGAGGCAGAATGGCAAGAGGTTGAATAATCAAGGGGGTGGGTTAT
CAAAATgggttaaaaatatattttgaaggcACCAGATCAGCTACCAGtat
ctagttctagttctagttatgtatttgcataagacaattaagcctaatct
cgcaaattctacgtaaaaattacaaaaatgaaaatatatctaTCTCAATG
GCAAGTCTTAAGAGCATCCTCAGGGAAttggaaagttaaaaaaagagaGT
CTATCAGTGAAATTGGTACAAAACCCTTCTACTGGCATTTGTTCTTTGTT
ATTGTAAAATGTCCGGTCATTTTGCCACATTTTTACATCCAGGTTGTTTC
TTGTAGCCTTACCCTttcttttgaacttttaaattaaatttagtacCAAT
CAATGACTGTACCCTACAATGccttttcaaatgaaatgtAAACTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggtcaaaaa
ttttgatttttttcttctttttatataatttggcagcttttgtacatatg
ccactaaattctttctaattttctttttttaagtccCCTCCCTAATATCA
TGCATAAAGTGGAGATTGTcattgaatgattttaatttcagaggatgcac
aataaaaaatgctgaaaaatgagAGCTCACACAAGTCTGTTGTAGCACAA
GCGAAACTAAAGTTATGGcattttaaagctcaaaaacTGCTGATTTTTTC
CATGAAACAGAGTGTCACCCAAAATTTTGCATTGTTAAAGTGGTTAATAA
ATTGACACTGACTGATGATTATGCTATCAAAGTCATGATTTTTAGCCATA
GCAACAATAAcactttgagaaaatcaaaaagatttttggtaacactcaac
caattttttaaatttatcatgAATGCGGTACACACGATATGAAACAGAAT
CGGCTGTAAAAATCTTATTCAACTTTAGAACCCTATAGAGGGTTAATGGA
AAGGTTTTCAAGATGGATCAAATGCTTAGATTTTGATACAAAGTTACTGT
ATCagcttgaaaaatgtttgagGTGATAAGGTtaagtgaaaatttcataa
tttttatttcagtaaAGTAAGATAATTTTCCGTCATTCCGTAaccaaaaa
tgatttctcaattAAAAACCAGTCTTCCCCCAATTGCAATTAATTTATGC
CTGATTTGAAAGTACTCAGTAAGAGGTAGAaacttgccaaatattttact
ctaaaaatgtttccttaaaactttacagcatttttaatttttccgtcatt
ccgtaaccaagatttttagaaaataaaatcctCAATCGTTCAATCCAGGG
AAGGCCAAACATGCTGTAAATGAGTTTTCTTGATCAATTGTTGGCCTATG
TTGGATTTAGAATAACTAAAACTGCAGCattcattgtattttttgtgata
aggctttggctgttttttaggctaaaaagctttaatttcaaggcttttta
gcctgaaaaatggcaaaatcaaGTTTCAGAAGTGCTGTAGCTCTAAAACA
ACTGCAAATGAGTTTAGGATACTATGAGAAATGAtatatataaatttgaa
aatgtttactgaaaaaaaattttcagctctcaaatgcactttttggttcc
ctttaaaataattttgcccctgtcagtgtagacctaaagctctaaaacag
catctaataacatgaaaaccagaatatgattcttcaatgggaatcaaaac
tataaagtgcacttacaaacatcaatTTGTCAGATCTAACAAAATTTATA
ACGGCACTGTCATCATTGACAATAAAACAAACAATATTCTggcaagagcc
ttgtaaacattccaacaacttccatcgaaatgatttatcacagctcagtc
taccatttttagcgtggtccgaggattgagccgagaacactccgcgaact
cctgcgcggttgaaaacttcaatctgtcaatcattttctcaagcgaagag
tacgcgaagcgaatctagctttacgatagtgccgcaggacatcaatggat
agtattcaatcatcattatccctttattttcatttttagaacttttgcaa
aaaaaaggaaaaatagaaaagttgtattttttactgctttattcacatac
tgaatttgaaagatcttctatgtggcgtttttttgcaaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNaactgatttttgtcccgcctttgcgggac
tttggcttaagtgcttgagtgcagcatagggtacaaagtccaaacatgcg
tttcccgtaatttttgtatgaagagttaggtctatactgcctGTCTGGtc
atttaaatacaaactttaatcaaaacaaaaatgatagagtaGATCTGtcc
atttttttggaaattttgctgctttgattggcttggtcagtcatttgatg
gctatgcatgtttgcctccgctgatgcaagttacccgacttcacggtacg
cACTTGTCAAGGTCAAGATTTCTTTAGCCAAacaaggaagaatttacaaa
aatgaacttcaatgcattgggccattccagaatttgtctgttaCAGGGGG
CGGACAACACAGGATTTccaagggcaaaagttttcaccaaaattcgaaat
ttccaaggagAGAGAAGTAAATGTATGAATTTGCAAGGcagttgaattaa
aaaaggcaaaaaagagtggaatttctaATGCATTTTGCCAAAGTACATAG
ATTTTTATctgaatttccgaccaccactcgaaaaggaaaattagttccga
tgctagaaaaaattaaaaaatgaattttggtaacaaaaattttctggaat
ggcccattattACTTACCTTTGTTGATCAACCAAATCtgatcattctttt
ttttaaatcaatcagaaattttcagagaaacaggtaaaaaaaatcttttc
tttccaaaattATTGATAGGCTCCAACATCAAGGTGAAAACACAACTTAG
CGCTGAGTTACAGCACCAGAAAATTCTTGACCCACATGGAAACAAATGAC
TGCCGCTAAGGCCGATGGAATTGGATTTCAAGTTTACTGTAAGATCCACT
TTCCGAATTCGATGCGGGCGAGTTGTCATTATTCATCATTTTAAAACACA
CACCTAACTTTATGTATGGAGATTAGGCCTTTAAATGACTCCTAGACTCC
AGACCTAAGCTAAAGCTatcatcattatttttttttgatttcatatcttt
tAACACTAcagtaaaacaaaaaaagcaAGACAGGTTTTTGAACATGCGTG
CAGCTTATggtaaacataacattaaattccATCTGCCTATGAGCTGGCTC
AGGGtttgaattataaattttaggagCTCTGCAATTTTTCCAAGCAAGGC
ACAATGTTTGGGAagcatttttagtatttttttatgtttttttggtgttc
agatcaatgttttgatttgaaatttacgTCATTTCACCGCAGAAGTAATT
TATACTAAAGTAATTTGTTATCTGCATattcagaatttttctggagCTTT
GCCCTCTAAACCCCCACCAGCCCCCGCCAGAGCTTTGGTGCCCTGGACCC
ACAGGGGGTTTAAAGAAGCAGATACCCTTTCAGATATACTCAATCTAGAT
TTATGAAAATGGCCCTAGttcaaagtgcttagaaaaatccctgattTAGG
GTTGATTGTGTAAACAATCAAATTGCACACCTCTGTTGGTCCCCAAAGGC
AGTGAAGATgtagaaaacaaaatttaaaaaacttctGCAAAGTTTGGTAT
CATTTATCAGCATTTATTGTATGAATTATTTTGTTAAGCTCAAATCTCCT
TGTTTAATGTTTGTAAACTTTCTAAAAACAGGTTAactaaagttttttta
ttaatGGTTTTTATCTTAATTTATAATTATAGCCACCCATGGAAAAATGT
AACAGAGGCAGCCTGGAAAAAGTACCCAAATGAACACAACACCAACGTCA
CTGCAATCGATGTGCTGGACAGGAAGGTTTCTGAAGATGGAAAACTGTCA
ACAACTAGGATATTTGGGTCACATTGGAACTTCCCTGCTCTCCTAGCAAC
AGTTTTGGGACTGCCTGAAATGTGTTACGCAGTTGAACACTCAGAGGTTG
ACCTTAAAGAACAGAAAATGACATTGAAGATGGtcaattatacatttttg
ggaATCTTAGCTGTTGAGGAGACACTTGTTTatcaaaaagacaaagaaaa
tccTAATACgtaagtattttttattttgttaaatgcTTTATTTAACGTGC
TAGAAAGCTCTTAATTATGTAACCAGGAAATATGGGGTTCCTACTGTAAA
GCTTGCTTGACCTATTTGCAAACAGTAAAATTGAAGCTAGAAAGGAAGCG
CTAATATTGGATTGATCAGGAGTCATGTTTTTTTTATCCCTTATCTCTTA
ACTTTTTAGAACATGTTTAACTCAAGATGCAAAGATCAGTGTACAAGGAA
TTTCATTCTCTGGCTATTTCGAAGACCTAGTCGTTTCAAACTATGATGTC
AATTCTGTCAAAGGACGTACCGCTATTGAACAAGTCGTTAACAAGATCAA
AATAGAGAACATACTTGATACCGTCAAAGAAGAACTTTGTGAATTGAAAT
TAGACGTTGATAGTGCTACCACTAAATTAGATAACGAATTTCACGTCACT
GAAAAATTACAAGCTCTAACCAAGGACTTAGACAATGCTACTGATTTGAT
AAACACGGAACTCAGCAAATTTTCTAGTTATTTGAGTGAGGAATTTCACC
AACTTGTAGAACGTTTATCAACTGAACTTGACCAGATAACTGTACGCGTT
GGACATATTGATACTAATGCTGGTGTTGTTGAATCGCAGAGGAAAATTAA
TTTAACTGATGCCGTTAAAAATGCTGGTATTGGAGTAAAATGATACTTTA
AACACTTATATAATTAGGATATTTTGATGGTTTGAATGAGTTGGAGAAAT
GGCATTGTTCCTTAGTATTCGGTGAATAAATGGATTATTTATTAGATGTA
GCTTTGATACAAAGGCTGGCTTTACCCTTGAAGAAATCtgggaaaattca
aaaatactagcaaaGTGTGAACAGATAACCTTGGCACTTGGACAGTTTAA
TATCCCACCATGGGCATTTACATACAGCTATCTGTCATAAAATGTTACac
aatatttcaaataaaaacagaaaaatataaattgtttATCATAAATTATG
CAACATAACTCTTATTAGATCAATTGATTCGAGTTTCACAGTgatgtttt
ttaacttttaatacTATTTATTACATAACATTTCCAAAATTATTATGTTG
TAGAGTAAGCACTGTGTAATAAAACCCTTAGACAcagaactaaaaaaaaa
agtaagatCAATAATCTATCATGTTTAATTTTATTACCTTATTCATTAGT
TATATTATGATTATGAGTTTATCCTTCTATGCAAAGGTTATGTAATCAGC
TCTGATTGAGTCACNGATCATATTATATTATGATTATGAGTTTATCCTTC
TATGCAAAGGTTATATGTAATCAGCTCTGATTGAGTCACATCAATCAGCT

Coding sequence (CDS) from alignment at sc0000753:73536..81735+

>TCONS_00029531 ID=TCONS_00029531|Name=TCONS_00029531|organism=Clytia hemisphaerica|type=CDS|length=2529bp|location=Sequence derived from alignment at sc0000753:73536..81735+ (Clytia hemisphaerica)
ATGAAACTTTGGACAAAAGAACATATATTCAGCCACCCATGGAAAAATGT
AACAGAGGCAGCCTGGAAAAAGTACCCAAATGAACACAACACCAACGTCA
CTGCAATCGATGTGCTGGACAGGAAGGTTTCTGAAGATGGAAAACTGTCA
ACAACTAGGATATTTGGGTCACATTGGAACTTCCCTGCTCTCCTAGCAAC
AGTTTTGGGACTGCCTGAAATGTGTTACGCAGTTGAACACTCAGAGGTTG
ACCTTAAAGAACAGAAAATGACATTGAAGATGGtcaattatacatttttg
ggaATCTTAGCTGTTGAGGAGACACTTGTTTatcaaaaagacaaagaaaa
tccTAATACAACATGTTTAACTCAAGATGCAAAGATCAGTGTACAAGGAA
TTTCATTCTCTGGCTATTTCGAAGACCTAGTCGTTTCAAACTATGATGTC
AATTCTGTCAAAGGACGTACCGCTATTGAACAAGTCGTTAACAAGATCAA
AATAGAGAACATACTTGATACCGTCAAAGAAGAACTTTGTGAATTGAAAT
TAGACGTTGATAGTGCTACCACTAAATTAGATAACGAATTTCACGTCACT
GAAAAATTACAAGCTCTAACCAAGGACTTAGACAATGCTACTGATTTGAT
AAACACGGAACTCAGCAAATTTTCTAGTTATTTGAGTGAGGAATTTCACC
AACTTGTAGAACGTTTATCAACTGAACTTGACCAGATAACTGTACGCGTT
GGACATATTGATACTAATGCTGGTGTTGTTGAATCGCAGAGGAAAATTAA
TTTAACTGATGCCGTTAAAAATGCTGGTATTGGAGTAAAATGAATGAAAC
TTTGGACAAAAGAACATATATTCAGCCACCCATGGAAAAATGTAACAGAG
GCAGCCTGGAAAAAGTACCCAAATGAACACAACACCAACGTCACTGCAAT
CGATGTGCTGGACAGGAAGGTTTCTGAAGATGGAAAACTGTCAACAACTA
GGATATTTGGGTCACATTGGAACTTCCCTGCTCTCCTAGCAACAGTTTTG
GGACTGCCTGAAATGTGTTACGCAGTTGAACACTCAGAGGTTGACCTTAA
AGAACAGAAAATGACATTGAAGATGGtcaattatacatttttgggaATCT
TAGCTGTTGAGGAGACACTTGTTTatcaaaaagacaaagaaaatccTAAT
ACAACATGTTTAACTCAAGATGCAAAGATCAGTGTACAAGGAATTTCATT
CTCTGGCTATTTCGAAGACCTAGTCGTTTCAAACTATGATGTCAATTCTG
TCAAAGGACGTACCGCTATTGAACAAGTCGTTAACAAGATCAAAATAGAG
AACATACTTGATACCGTCAAAGAAGAACTTTGTGAATTGAAATTAGACGT
TGATAGTGCTACCACTAAATTAGATAACGAATTTCACGTCACTGAAAAAT
TACAAGCTCTAACCAAGGACTTAGACAATGCTACTGATTTGATAAACACG
GAACTCAGCAAATTTTCTAGTTATTTGAGTGAGGAATTTCACCAACTTGT
AGAACGTTTATCAACTGAACTTGACCAGATAACTGTACGCGTTGGACATA
TTGATACTAATGCTGGTGTTGTTGAATCGCAGAGGAAAATTAATTTAACT
GATGCCGTTAAAAATGCTGGTATTGGAGTAAAATGAATGAAACTTTGGAC
AAAAGAACATATATTCAGCCACCCATGGAAAAATGTAACAGAGGCAGCCT
GGAAAAAGTACCCAAATGAACACAACACCAACGTCACTGCAATCGATGTG
CTGGACAGGAAGGTTTCTGAAGATGGAAAACTGTCAACAACTAGGATATT
TGGGTCACATTGGAACTTCCCTGCTCTCCTAGCAACAGTTTTGGGACTGC
CTGAAATGTGTTACGCAGTTGAACACTCAGAGGTTGACCTTAAAGAACAG
AAAATGACATTGAAGATGGtcaattatacatttttgggaATCTTAGCTGT
TGAGGAGACACTTGTTTatcaaaaagacaaagaaaatccTAATACAACAT
GTTTAACTCAAGATGCAAAGATCAGTGTACAAGGAATTTCATTCTCTGGC
TATTTCGAAGACCTAGTCGTTTCAAACTATGATGTCAATTCTGTCAAAGG
ACGTACCGCTATTGAACAAGTCGTTAACAAGATCAAAATAGAGAACATAC
TTGATACCGTCAAAGAAGAACTTTGTGAATTGAAATTAGACGTTGATAGT
GCTACCACTAAATTAGATAACGAATTTCACGTCACTGAAAAATTACAAGC
TCTAACCAAGGACTTAGACAATGCTACTGATTTGATAAACACGGAACTCA
GCAAATTTTCTAGTTATTTGAGTGAGGAATTTCACCAACTTGTAGAACGT
TTATCAACTGAACTTGACCAGATAACTGTACGCGTTGGACATATTGATAC
TAATGCTGGTGTTGTTGAATCGCAGAGGAAAATTAATTTAACTGATGCCG
TTAAAAATGCTGGTATTGGAGTAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016854XLOC_016854Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029531-proteinTCONS_00029531-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029531-exon-sc0000753-1491911889:73536..74024TCONS_00029531-exon-sc0000753-1491911889:73536..74024Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1510915933:73536..74024TCONS_00029531-exon-sc0000753-1510915933:73536..74024Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1575043694:73536..74024TCONS_00029531-exon-sc0000753-1575043694:73536..74024Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1491911889:80068..80394TCONS_00029531-exon-sc0000753-1491911889:80068..80394Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1510915933:80068..80394TCONS_00029531-exon-sc0000753-1510915933:80068..80394Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1575043694:80068..80394TCONS_00029531-exon-sc0000753-1575043694:80068..80394Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1491911889:80595..81735TCONS_00029531-exon-sc0000753-1491911889:80595..81735Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1510915933:80595..81735TCONS_00029531-exon-sc0000753-1510915933:80595..81735Clytia hemisphaericaexon
TCONS_00029531-exon-sc0000753-1575043694:80595..81735TCONS_00029531-exon-sc0000753-1575043694:80595..81735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000753supercontigsc0000753:73536..81735 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
180.21	186.104	125.54	125.003	79.4144	61.2089	74.2603	79.8302	77.9387	60.0805	203.612	168.005	121.822	130.93	75.6256	76.7419	83.8755	115.111	64.7679	66.2626	154.216	154.537	134.368	141.306	209.195	211.692	104.663	116.811	82.4224	76.1932
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006797PRELI/MSF1_dom
Blast
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BLAST of TCONS_00029531 vs. Swiss-Prot (Human)
Match: PLD3B (PRELI domain containing protein 3B OS=Homo sapiens GN=PRELID3B PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.943e-44
Identity = 72/170 (42.35%), Postives = 108/170 (63.53%), Query Frame = 2 
Query:  458 MKLWTKEHIFSHPWKNVTEAAWKKYPNEHNTNVTAIDVLDRKVSEDGKLSTTRIFGSHWNFPALLATVLGLPEM-CYAVEHSEVDLKEQKMTLKMVNYTFLGILAVEETLVYQKDKENPNTTCLTQDAKISVQGISFSGYFEDLVVSNYDVNSVKGRTAIEQVVNKIKIE 964
            MK+WT EH+F HPW+ VT AA +KYPN  N +V  +DVLDR +   GKL + R+  + W  P+++ +++G      Y  EHS VD  E+ M LK  N +F  +++V+E L+Y+   ++P  T LTQ+A I+V+G+S S Y E L+ S    N+ KGR A+E V++K+  E
Sbjct:    1 MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170
The following BLAST results are available for this feature:
BLAST of TCONS_00029531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLD3B1.943e-4442.35PRELI domain containing protein 3B OS=Homo sapiens... [more]
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