TCONS_00029534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029534
Unique NameTCONS_00029534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029534 ID=TCONS_00029534|Name=TCONS_00029534|organism=Clytia hemisphaerica|type=transcript|length=1859bp
TATCTCACAACGTTTAAAGAACGTTCTGGGCCAGCTTCAGGTATACTCTG
CTTAAAAATCCACCTTTCCTTATTGTGTTTTTATGacatttcattttcac
ttttagGACAATGCATGGCCTCACCACTTCTCTTTGGGAGGTCATCTCCT
GGAAATCAAAATCTCAATATGACACAGCTGGCGATCAATACACTCGTATC
TTCATGCCAAAACTGTTCATCATTTCGTCTCTTATAATGGCTTTCAGCTA
CTTCAATGATAAACTAAACTGCATGGTTTCATCAAGGCTCAATGGATTGA
AGGAGTTTGTTCAAGAGACCTGTTGGATTCAAGGATTTTACATTTACCAT
GAAATGCACACAAAATTGAACGAGTCTTCGTATTACGGAATTCCTGAATA
TACAGGTTATAATGGAATTACAAAAGACGGTCAATTATGCTCAACTATCA
ACCGTGCAGGAGGAGTCCATACCAAATGTGCACCAATGACTAAAAGatat
TTCTTACATTATCAATGGGTGCCTTTTTACGTGGTTAGTTTGGCTATCCT
ATACTACGTTCCATATCTAATCTTCAAGTCGGTCAACTCAGATCTCATCT
CACTGGTGGATACAGTGGAAACCGGCAATCTACGAGATGTGGATAAGATT
GCCAACAACTACTTTAACTATCGCATCAATTCTAAAGTCAAGATGAAGAT
CATTGTTTGGGTTATTTTCATTGTCGTTAACATCTCTGGCTTCTTATTGA
CCGATTACACAATGGATGGACGATTTATCGATTATGGTCTTAACTGGATC
AGTTGGAATGATGTGCCCAACCATATTGCTCATGACATTGTGAAAAGAGG
AACACCAAAACCTGGCGATCATTTCTTGCCATCTGTCGGAATGTGTGATA
TCCACGAAGCGCTGAATGACAAACGTGGTATTTACATCGATAAacacAAA
GTGATCTGTGAAATCAGCCAAAACATTCGATACCAATacaattttatcat
tctatGGTTCTTCTTTGCTTCTGGTTTGGTCATCTCATCATTTGGTCTTc
tccattcaattttcaaacttctcAAATCAATGTTTTGGGTTTACTCACCA
AAGTTGTTCGACCATGAAACATCACTATCTAATCGCGTTCATTCTCAACT
CACACTCAGAGAGATGGAATATCTTGATAAGATTCGTCAGATGGATATGA
CAATGTACGGCGAGATTCTCCGGGAATTGACAAGATATAAACCAAGTATT
GGCTCTATTAAGAAGTTTGCACCTCAAACTACATCTGAGATGATTACATT
GCTACCATCAGCACCAAAAGAAATACAAAATCATTGGGATAGACTTGTTT
GATTCCAATCTTCGTTCGGTCTTGAATGGAATCTTTGACTATTTGGTGAA
TAGAGTAGGATACAGAACGGCTACACTAAGCTTACACTAAACATCAAAGA
AATGCCCTTTAATTAATGTTACAAAACATCTATCTAGTGTTAGATAGAGG
TTGAAACATCAGCCGAACAAGTCAGTAGTCAAAACACATCCAGTCCACAA
CACTTCATCGAAATGGCAAGAACTGCCATCACGAGAATTAGTTCTCCAAA
AGGAAGGTGTTGTTGTTCCGAAACAGGAAAGAAAAATGGAATTAGGAGGC
GGTACCTGGTGTATTTCCTAACTATCTGTTGAATGTTATTTATTTATCTT
TTATCCATGAGCATTTCCGGAGTTCACAATACCTACCGTCATTTCTCTAA
TTTATCGCGTCCTCTAATTCATACGGATCAAAttggtttgaaaaatttgg
ACCAATATTTTTCCTCTAATTATTAGTTCTGGACCTTTTTTACCTATTTC
TGATTTTCC
Run BLAST on NCBI

transcript from alignment at sc0000753:35762..41211-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029534 ID=TCONS_00029534|Name=TCONS_00029534|organism=Clytia hemisphaerica|type=transcript|length=5450bp|location=Sequence derived from alignment at sc0000753:35762..41211- (Clytia hemisphaerica)
TATCTCACAACGTTTAAAGAACGTTCTGGGCCAGCTTCAGGTATACTCTG
CTTAAAAATCCACCTTTCCTTATTGTGTTTTTATGACATTTCATTTTCAC
TTTTAGGACAATGCATGGCCTCACCACTTCTCTTTGGGAGGTCATCTCCT
GGAAATCAAAATCTCAATATGACACAGCTGGCGATCAATACACTCGTATC
TTCATGCCAAAACTGTTCATCATTTCGTCTCTTATAATGGCTTTCAGCTA
CTTCAATGATAAACTAAACTGCATGGTTTCATCAAGGCTCAATGGATTGA
AGGAGTTTGTTCAAGAGACCTGTTGGATTCAAGGATTTTACATTTACCAT
GAAATGCACACAAAATTGAACGAGTCTTCGTATTACGGAATTCCTGAATA
TACAGGTTATAATGGAATTACAAAAGACGGTAAGGAACGACAAATACACT
TTAGTGTTCACAGGTTCTAAAGAGCATTTGAAATTTCTTCCAGAAAACCC
CCCTCCCCTTTAGAATAAAGTCACTCGTTGAGAAAAAAAACCATCTTCTC
GGTAACCAAAGATTATATTTGTAATTTGAGCTAAGATATGATAGATATTA
ACATTTGTAATAATGGTAGATGCTCTAAGTAAATCCATTCACACATAAAT
ATTACGTTTAAGGCACTGAAAAGGCTAGAGAGAAATCATCAGCCTCTCAA
TCAAGAAAAAGTAAGAAAAATGCGTCACATTTAGGATGACCTTTCTTTGT
TTTTAAGCGACATATTTTTGAAATCTCCTATGGATTTACTTTCAATCTGT
CGTTTGTGTGAAAGCGAAGTGGGTCAACAAGTAGCCAGTGCCTTACCGCA
AACCAATTGTTTTCTTTGTTTTATGGTCAGTTACACTTTGAAGAATTTGT
CGAAAGTTATCGCACTGCGGTGGAGGCCGTCGTCGGTTCAGTGGTAAGGC
ACTGACTACTTGTTGGCCCGCTTGGCTTTCACACAAACACGGAAAACATG
AAACTCGGAAATAAAAGGGGGGGTTTCATGGTTGGCGGAGGAGCGGAATC
GGCCCTTTTTTCGGACGGAGTGGCGGAATTTGGCGAAAATTTAGACGGAA
TTACGGAAATTGGATTCTCTGACGGAGGCGGAAAATTAGACAATTTTAGT
GCGGAAAAACGGAATTTAGCAAAAAAAATTGCGGAATTTCAGAATCGGTA
AAAAATATTCAAAATTTGCGGAATTTTCGACAAAAATATTGAATTTCAAA
GGAATTTACGGTGACGGAATTTTGGTTCAATTTAAGACGGTATGACGGAA
ATTGGAGAAAAAATTGGCGGAATTGCGGAATCGGGTACCCCCTGAACCCC
CCCATAAAAGACTGGAATGGACAATCGNGCTTGGCTTTCACACAAACACG
GAAAACATGAAACTCGGAAATAAAAGACTGGAATGGACAATCGAATAGGA
TTTTTTCTAAAAGGCTGGCCAACAAGTGGCTTCATTTCCCATCCAGTAGT
TACACACCTATCAAAAACGCTCAAAGCGTGAGGAGACTGGGTTAGAATTT
ACCAGGGGGAGGATTGACATCAAACTGATTGTTGCGGTGATTTTAATACA
AACAAAGAGTTTCGTCATCTCTTCTATCATTAAACTCAAACCCAGTTTTC
GCGCGCTTCAGAGGGTTTATACACAGATATTTAAGCCCGAAGGGCTAGAT
AGGCAACTTTAAGCTTTCTCCAGCAAAAAAAAGTGAAGCAAAAATTTGAC
TTTTTAAATTTCGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
TTTTAGTCACGTGACTCTGGTAGGAAATCCTTCCAAAGATGAGCTTCACT
TTTTGATAAAAGCTGCAAATCTAGCCCTTCGGGCTTTACAGATATCTGTG
GGTTTATAGTGGTCTTGCAGACTAGAATCGGTTTAATACGGTAATATGGG
TGTTATATAATAATACGATAGTTGTTACGGGATAATAGCACCAGTTTGTC
TAAAATACAATTTGTCCCTTCCATTATTCTTTGTTTGTTTGTTTTGCAGC
GAACGTTCTCGTTTCCTCAAACAGGTCAATTATGCTCAACTATCAACCGT
GCAGGAGGAGTCCATACCAAATGTGCACCAATGACTAAAAGGTATCAACA
TATTGTGGTGGATAATTTGAGACATTCTACAATCAAATAAATATCAAACC
GTGAAGACAAGGTCTTTTTTTAATACAAGATCTTGTATCAAAACGCTCGC
AAAGTAGATATATTTCAGCGTTTGGCTTAGATGGGGTTTCGGATTATGTC
TGATTTGCTTTTTCGGATCAACTCTTTATTTCCGTTACAACAATTCTTAT
TTGAAATAGAACGTCAGAACGTTTCCATTGAACTGTCGAAAATTTGACGC
GATTCGTGTAGAAAGAGTCTTTGTAGACTAGAACTCAAAATTCAGCGGTC
GTTGAAGGCTTACAAACGAAGAAAACAATATCTCGAAAAGGAAGAGCCTA
TAAAGTAACGAGTAATCACAAGAAATTTTCTTCACTTTTTTCTTTAGATA
TTTCTTACATTATCAATGGGTGCCTTTTTACGTGGTTAGTTTGGCTATCC
TATACTACGTTCCATATCTAATCTTCAAGTCGGTCAACTCAGATCTCATC
TCACTGGTGGATACAGTGGAAACCGGCAATCTACGAGATGTGGATAAGAT
TGCCAACAACTACTTTAACTATCGCATCAATTCTAAAGTCAAGATGAAGA
TCATTGTTTGGGTAAACCTTATGATTAAGGTATTGTTTACGAAAAGCCTC
ACTTTGTCTTAGTGTATCCTAGGTTTTGTTACGTTACTGATAGTCGCATG
AGGGTATCTATGGTACCCCAGTAAACATCAATGGTACGAGGTTGCTTTTG
ATAACATGAAAATTGAGTTTTATTTCCTTTATTAACTGGAGCACACTTAA
TCACAGTAACCAAAACTTATGCCTGGTTTGAAAATGATTTTACTTCATCA
CGCAGCAAGGGCAGCGATTTCATGATATTACTAAGACAGTTACTGGGCAG
TTACAACGGAGGCCAGAAAGGAATTTACGAGGAAAAGTTTTATTATTATC
TTATAGAAAGATGGTCCCTAGAGCCTCCTCGACGTGTAAAAATGGGTATG
GTACATGGCTCATTAGTGATTGTCACATGCAAGCCCATAGGATGCATTTT
CATTTTGAGGGGGCAAAGTGAGAAATATAAGCCGAGGGCGATGCCATGGT
TTGGCCCGAGAGAGAAAATTTCGCAATTTAAGGTTGCTGGGAAACGCATC
TAATTAAAGGATTATGTTCAAANGGGGCAAAGTGAGAAATATAAACCGAG
GGCCATGCCATGGCTTGGCCCGAGGGAGAAAAATTTCGCAATTTAAGGTG
TCTAGATTGCTGGGAAACGCATCGAATTAAAGGATTATATTCAAAATAAA
GCCATTGATACAAGATTTATCAAATGGAAAAACTTTTTAGGGGGAAATGC
CCCTGTGCCCCCTCCCCCGGTTACTACGGGCCTGACATGTAATCTTATTG
TTCAGGTTATTTTCATTGTCGTTAACATCTCTGGCTTCTTATTGACCGAT
TACACAATGGATGGACGATTTATCGATTATGGTCTTAACTGGATCAGTTG
GAATGATGTGCCCAACCATATTGCTCATGACATTGTGAAAAGAGGAACAC
CAAAACCTGGCGATCATTTCTTGCCATCTGTCGGAATGTGTGATATCCAC
GAAGCGCTGAATGACAAACGTGGTATTTACATCGATAAGTAAGTGCCCTT
AGAAAATTCTCATCATGAAATGTTGAAGTTTTATGCTAATTTGACAATAA
GCTTTGTTTCTTATACAAAATAAAGATCATCATTGGATGTACAAACTTTT
GCGAGCAGAAACTTTCGCGAGGTCAAAAAATCGCGAAATTCACGACATTT
ACTTTCGCGAATTTGAGGAAAAAATGTTTTTCGCGACCATAAAATTTTGC
AAATCGTTGGATAAAAATGAGAATTTTCGAATGAAAATTACCTTAACAGT
GAAAATATTCCTTAAATCCGATAAGGACAGTTGCTCTTGGACATAGGATT
AAAGAAAGACATTAAAGGTTAATAATGTACCGAAAATTTGATATTTATTA
CGATTTCGTGGTTTTATAGATTTCAAACGTTTTTGAGAATTTTTCGCGAG
CATAAACTTTCACGAATTGCCCTGTCAAGAATTTTCAAAGACATTTACTT
TTGCGAGAAAGGCGAAAATTCGCAAAAAGCGAAAGTTTCTGCTCGCGAAA
GTTTGTACGCCTAAAGTATCTTTTTTTATTTCAGACACAAAGTGATCTGT
GAAATCAGCCAAAACATTCGATACCAATACAATTTTATCATTCTATGGTT
CTTCTTTGCTTCTGGTTTGGTCATCTCATCATTTGGTCTTCTCCATTCAA
TTTTCAAACTTCTCAAATCAATGTTTTGGGTTTACTCACCAAAGTTGTTC
GACCATGAAACATCACTATCTAATCGCGTTCATTCTCAACTCACACTCAG
AGAGATGGAATATCTTGATAAGATTCGTCAGATGGATATGACAATGTACG
GCGAGATTCTCCGGGAATTGACAAGATATAAACCAAGTATTGGCTCTATT
AAGAAGTTTGCACCTCAAACTACATCTGAGATGATTACATTGCTACCATC
AGCACCAAAAGAAATACAAAATCATTGGGATAGACTTGTTTGATTCCAAT
CTTCGTTCGGTCTTGAATGGAATCTTTGACTATTTGGTGAATAGAGTAGG
ATACAGAACGGCTACACTAAGCTTACACTAAACATCAAAGAAATGCCCTT
TAATTAATGTTACAAAACATCTATCTAGTGTTAGATAGAGGTTGAAACAT
CAGCCGAACAAGTCAGTAGTCAAAACACATCCAGTCCACAACACTTCATC
GAAATGGCAAGAACTGCCATCACGAGAATTAGTTCTCCAAAAGGAAGGTG
TTGTTGTTCCGAAACAGGAAAGAAAAATGGAATTAGGAGGCGGTACCTGG
TGTATTTCCTAACTATCTGTTGAATGTTATTTATTTATCTTTTATCCATG
AGCATTTCCGGAGTTCACAATACCTACCGTCATTTCTCTAATTTATCGCG
TCCTCTAATTCATACGGATCAAATTGGTTTGAAAAATTTGGACCAATATT
TTTCCTCTAATTATTAGTTCTGGACCTTTTTTACCTATTTCTGATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016856XLOC_016856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029534-exon-sc0000753-1575043694:40783..41211TCONS_00029534-exon-sc0000753-1575043694:40783..41211Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1575043694:38871..38937TCONS_00029534-exon-sc0000753-1575043694:38871..38937Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1575043694:38251..38464TCONS_00029534-exon-sc0000753-1575043694:38251..38464Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1575043694:37224..37456TCONS_00029534-exon-sc0000753-1575043694:37224..37456Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1575043694:35762..36677TCONS_00029534-exon-sc0000753-1575043694:35762..36677Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1510915933:40783..41211TCONS_00029534-exon-sc0000753-1510915933:40783..41211Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1510915933:38871..38937TCONS_00029534-exon-sc0000753-1510915933:38871..38937Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1510915933:38251..38464TCONS_00029534-exon-sc0000753-1510915933:38251..38464Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1510915933:37224..37456TCONS_00029534-exon-sc0000753-1510915933:37224..37456Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1510915933:35762..36677TCONS_00029534-exon-sc0000753-1510915933:35762..36677Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1491911889:40783..41211TCONS_00029534-exon-sc0000753-1491911889:40783..41211Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1491911889:38871..38937TCONS_00029534-exon-sc0000753-1491911889:38871..38937Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1491911889:38251..38464TCONS_00029534-exon-sc0000753-1491911889:38251..38464Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1491911889:37224..37456TCONS_00029534-exon-sc0000753-1491911889:37224..37456Clytia hemisphaericaexon
TCONS_00029534-exon-sc0000753-1491911889:35762..36677TCONS_00029534-exon-sc0000753-1491911889:35762..36677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000753supercontigsc0000753:35762..41211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.45976e-05	2.33186e-05	1.62637e-05	5.60412e-05	3.83777e-05	9.64844e-06	1.00446e-05	2.08306e-05	0	0	0	0	1.16641	0.62412	3.32236e-05	2.08714e-05	0	0	1.10034	1.88487	0	0.530578	0	0	0	0	0	2.0261e-05	1.73452e-05	3.15374e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top