TCONS_00029538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029538
Unique NameTCONS_00029538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029538 ID=TCONS_00029538|Name=TCONS_00029538|organism=Clytia hemisphaerica|type=transcript|length=531bp
CAAAGGTTAACCATGGCGAAAGTGCTGTCAGATCACCCAAACCGAGATTA
AGGTTCTTAAAAGTAGATTCATTTCACTTGGAATGAAATACACAAAAACA
GACTCCAAAAATAAAAGTGATTAATAGCGTTATTATTGGATGCTTCTGCC
CCAGGGATCAGGAGCATGTATCCTGGGAGGAGCTTGCGTCCTGGGATGAA
GAGCATGCATGGGAGCGCCGTTCTCTCTTGGTGCAGATGGAAGCAAAGTG
ACTGCTTCTGATGTAGCTTGAGGTGCGAACTTCCTAATGGTGCCAATATT
AGGTTTGTAACGAATCAACTCTCGGAGAATTTCGCCATACATTGTCATAT
CCATTTGGCGAATCTTGTCAAGATATTCCATTTCCCTGAGTGTGAGTTGA
GAGTTGACTTTGTCTGATAATTGGTCATCTTCAATGTAANtgctccacat
ttttctttattcattacaaaagattctatttatttcaatctgctgaatca
acatacattataactatgtaaaaggtcaatg
Run BLAST on NCBI

protein sequence of TCONS_00029538-protein

>TCONS_00029538-protein ID=TCONS_00029538-protein|Name=TCONS_00029538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MWSXYIEDDQLSDKVNSQLTLREMEYLDKIRQMDMTMYGEILRELIRYKP
NIGTIRKFAPQATSEAVTLLPSAPRENGAPMHALHPRTQAPPRIHAPDPW
GRSIQ
Run BLAST on NCBI

transcript from alignment at sc0000753:56649..57179

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029538 ID=TCONS_00029538|Name=TCONS_00029538|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0000753:56649..57179 (Clytia hemisphaerica)
cattgaccttttacatagttataatgtatgttgattcagcagattgaaat
aaatagaatcttttgtaatgaataaagaaaaatgtggagcaNTTACATTG
AAGATGACCAATTATCAGACAAAGTCAACTCTCAACTCACACTCAGGGAA
ATGGAATATCTTGACAAGATTCGCCAAATGGATATGACAATGTATGGCGA
AATTCTCCGAGAGTTGATTCGTTACAAACCTAATATTGGCACCATTAGGA
AGTTCGCACCTCAAGCTACATCAGAAGCAGTCACTTTGCTTCCATCTGCA
CCAAGAGAGAACGGCGCTCCCATGCATGCTCTTCATCCCAGGACGCAAGC
TCCTCCCAGGATACATGCTCCTGATCCCTGGGGCAGAAGCATCCAATAAT
AACGCTATTAATCACTTTTATTTTTGGAGTCTGTTTTTGTGTATTTCATT
CCAAGTGAAATGAATCTACTTTTAAGAACCTTAATCTCGGTTTGGGTGAT
CTGACAGCACTTTCGCCATGGTTAACCTTTG

Coding sequence (CDS) from alignment at sc0000753:56649..57179

>TCONS_00029538 ID=TCONS_00029538|Name=TCONS_00029538|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000753:56649..57179 (Clytia hemisphaerica)
atgtggagcaNTTACATTGAAGATGACCAATTATCAGACAAAGTCAACTC
TCAACTCACACTCAGGGAAATGGAATATCTTGACAAGATTCGCCAAATGG
ATATGACAATGTATGGCGAAATTCTCCGAGAGTTGATTCGTTACAAACCT
AATATTGGCACCATTAGGAAGTTCGCACCTCAAGCTACATCAGAAGCAGT
CACTTTGCTTCCATCTGCACCAAGAGAGAACGGCGCTCCCATGCATGCTC
TTCATCCCAGGACGCAAGCTCCTCCCAGGATACATGCTCCTGATCCCTGG
GGCAGAAGCATCCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016858XLOC_016858Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029538-proteinTCONS_00029538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029538-exon-sc0000753-1491911889:56649..57179TCONS_00029538-exon-sc0000753-1491911889:56649..57179Clytia hemisphaericaexon
TCONS_00029538-exon-sc0000753-1510915933:56649..57179TCONS_00029538-exon-sc0000753-1510915933:56649..57179Clytia hemisphaericaexon
TCONS_00029538-exon-sc0000753-1575043694:56649..57179TCONS_00029538-exon-sc0000753-1575043694:56649..57179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000753supercontigsc0000753:56649..57179 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.320764	0.745099	1.83994	1.80375	0.302497	0.14038	0.657379	0.164587	0.119222	0	0.111782	0.477671	10.7389	14.848	4.63212	2.0125	1.32207	1.22266	36.3398	33.0363	2.78097	1.19719	0.960276	1.92209	1.19298	1.12157	0.57009	0.226959	0.176031	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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