TCONS_00029542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029542
Unique NameTCONS_00029542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029542 ID=TCONS_00029542|Name=TCONS_00029542|organism=Clytia hemisphaerica|type=transcript|length=317bp
NNGACATCTCTCCATTGTTCAAACCCCTACTCGAATTCTCAAATGGTGTA
AATGAAGGACTTCTACTTTACTCTGAAGATCTTAACATTATCATTGGAAT
TCCATACAGACAGCCAACAAACCCAAATCACAAATCAGATGCACCAGAAT
TCGCAGAGCTTATATCATCAATAGTATCAAAGATTGAAACTCTCTATAGC
TGCTGTCCTGATCTTTACATTTGTGGTGATTTTTAACATTCCACATACAC
TCTCAAACCAACAATGTATACCTACAGTGAACTGTGACAGATCActctta
aaaattttagatgaatt
Run BLAST on NCBI

transcript from alignment at sc0000753:102785..103101

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029542 ID=TCONS_00029542|Name=TCONS_00029542|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at sc0000753:102785..103101 (Clytia hemisphaerica)
aattcatctaaaatttttaagagTGATCTGTCACAGTTCACTGTAGGTAT
ACATTGTTGGTTTGAGAGTGTATGTGGAATGTTAAAAATCACCACAAATG
TAAAGATCAGGACAGCAGCTATAGAGAGTTTCAATCTTTGATACTATTGA
TGATATAAGCTCTGCGAATTCTGGTGCATCTGATTTGTGATTTGGGTTTG
TTGGCTGTCTGTATGGAATTCCAATGATAATGTTAAGATCTTCAGAGTAA
AGTAGAAGTCCTTCATTTACACCATTTGAGAATTCGAGTAGGGGTTTGAA
CAATGGAGAGATGTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016862XLOC_016862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029542-exon-sc0000753-1491911889:102785..103101TCONS_00029542-exon-sc0000753-1491911889:102785..103101Clytia hemisphaericaexon
TCONS_00029542-exon-sc0000753-1510915933:102785..103101TCONS_00029542-exon-sc0000753-1510915933:102785..103101Clytia hemisphaericaexon
TCONS_00029542-exon-sc0000753-1575043694:102785..103101TCONS_00029542-exon-sc0000753-1575043694:102785..103101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000753supercontigsc0000753:102785..103101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.328438	0.370868	1.11562	1.28139	0	0	0	0.395314	1.10707	0.342823	0.998256	0.507809	1.44763	0.954978	0.992475	1.20085	1.23279	1.51628	2.7931	4.88428	2.24706	2.95441	0.376581	1.50844	0.35263	0.629427	4.41091	1.55044	0	0.742819
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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