TCONS_00029543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029543
Unique NameTCONS_00029543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029543 ID=TCONS_00029543|Name=TCONS_00029543|organism=Clytia hemisphaerica|type=transcript|length=273bp
ACCACGCCATCTACAGGACAATTTTCTTCCAAACCACCAATCAACAAGAA
CCCTGCACTAACAACCTTTGCTTTCTTGAACATACAAGGTTTATGTCCAC
AAACCTCACCATCTTGTGTTCCCTATATCAGAGATATCTTGACAActgaa
aatcatatttttattgatttaacAGAAACTTGGCTATCACCCAACCACAA
AGCTGGAGAACTAGAAATCGAAGGCTACACCTTACATAGAAAGGACCGTG
ATCGTGATAAACCCAAACAAGGA
Run BLAST on NCBI

transcript from alignment at sc0000753:103211..103483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029543 ID=TCONS_00029543|Name=TCONS_00029543|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0000753:103211..103483 (Clytia hemisphaerica)
TCCTTGTTTGGGTTTATCACGATCACGGTCCTTTCTATGTAAGGTGTAGC
CTTCGATTTCTAGTTCTCCAGCTTTGTGGTTGGGTGATAGCCAAGTTTCT
gttaaatcaataaaaatatgattttcagTTGTCAAGATATCTCTGATATA
GGGAACACAAGATGGTGAGGTTTGTGGACATAAACCTTGTATGTTCAAGA
AAGCAAAGGTTGTTAGTGCAGGGTTCTTGTTGATTGGTGGTTTGGAAGAA
AATTGTCCTGTAGATGGCGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016863XLOC_016863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029543-exon-sc0000753-1491911889:103211..103483TCONS_00029543-exon-sc0000753-1491911889:103211..103483Clytia hemisphaericaexon
TCONS_00029543-exon-sc0000753-1510915933:103211..103483TCONS_00029543-exon-sc0000753-1510915933:103211..103483Clytia hemisphaericaexon
TCONS_00029543-exon-sc0000753-1575043694:103211..103483TCONS_00029543-exon-sc0000753-1575043694:103211..103483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000753supercontigsc0000753:103211..103483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.13993	4.4568	0.799697	0	2.45697	2.32097	4.72648	0.38846	4.17636	2.10375	3.924	3.50748	0	5.56259	0	4.5943	3.5608	4.20165	13.9149	0.474914	2.08672	1.01383	0.439801	8.39293	3.63179	2.6985	3.06243	0.684362	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top