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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029549 ID=TCONS_00029549|Name=TCONS_00029549|organism=Clytia hemisphaerica|type=transcript|length=1687bp
TGCAGACACAGCTTAATCCGTAACAGTGACCTTTTGACGTCATATGATGA
CAGATTAGTGGTTATGAAAGACTATAAATTAGCGGATGAAAATCGATCAT
AAAACAAAACAGATAAGTTCTGAACATTTTGGACATCAAACAACTTACGA
TGaagaattttgtatttttattacTGCTGATGGTCATCAGTGTTTGTTGC
GGCGAGGACgatgcaaaagacgtaaaaTCACCGCTCGATTACTTCACCAA
CCCCAAACTTGCTGCAGCTGTCGAAGCAGCCAAGAAACTGAAAGATCTCA
TCCACTCCTCCTCTTCAAGTCACGTACAGAAACGCGAGAAAACGTCCGGC
TTCGAGTTCTTAGACATGACTTCTTACACACGTCGCGCTCGTGGCATTCC
GCGCAAAGACATTCTAAAAAGAATCATCAAGAGATATTTGAAACCTTTCG
CTGCNATAAATTAGCGGATGAAAATCGATCATAAAGCAAAACAGATAAGT
TCTGAACATTTTGGACATCAAACAACTAAAGATGaagaattttgtatttt
tattacTGTTGATGGTCATCAGTGTTTGTTGCGGCGAGGACgatgcaaaa
gacgtaaaaTCACCGCTCGATTACTTCACCAACCCCAAACTTGCTGCAGC
TGTCGAAGCAGCCAAGAAACTGAAAGATCTCATCCACTCCTCCTCTTCAA
GTCACGTACAGAAACGCGAGAAAACGTCCGGCTTCGAGTTCTTAGACATG
ACTTCTTACACACGTCGCGCTCGTGGCATTCCGCGCAAAGACATTCTAAA
AAGAATCATCAAGAGATATTTAAAACCTTTCGCTGCGAAAAGTGAGAAGC
CAGAAATTAGACAGATTGTAAAAGAGTTCGAGGAATTCTTGGATTGGGGC
GTGGAATCAGACACTCATCAACTTTTCAGCATCATTTCGCAAAAAGCTGA
CGGAAAAGTTCACGCCATTTTCATTCACTTTAATCAACGTGAGGACGGGA
AATTCGACTACAAACATGTCTTATTCAACGGCCGCTTCCGATTGGCTGCT
GACATGGTCATCGTTCGGAGCACCAAGAGCAACTTTTTCAGCTCTTCCTC
TAAAGATGTGATCCGGTATCTGCCGAGGCGAGGACTGACCGGTCAAGACA
TCCGCGATTTGATGGAGTTGATCGTTCCCAAGATCGCAAGTGTTGTCAAT
GATTTTGTACCTGCTGataattaaaagaaaactttgtgCAATCTGTCGCA
caacaatttattttttaaggCACCTCAGAATTAATTAAAGATGGGTTCTA
TAAAAGGCTTGCAAGAAATTAATATTCAAGTTGTTTCCAGCTTATACGTC
TTATGTGTTTATTTCACAGAACACATACATACCCGAAGTTTCCCCGATAA
ATACTGTAACCGTAACCGAGTTAGGGAGAATTAGCTCACAAAAGCCCCTA
ACCTTTTAAATAAATCATatgtggctgaaatttggcacagaggtTCCTTT
TGGGTTCAAGAACCACCAAAAAACAACCGCATTCGATTCGAAAAGTTTTC
GACCATTTTTAGTTCATTATAtatatgatgacgtcattttccagtgcaaa
caagattttcaaaaagttttgaagaataaattttgattgttataccgtat
tactttgaataaacggccccttcgaataaacgccccc Run BLAST on NCBI protein sequence of TCONS_00029549-protein >TCONS_00029549-protein ID=TCONS_00029549-protein|Name=TCONS_00029549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MKNFVFLLLLMVISVCCGEDDAKDVKSPLDYFTNPKLAAAVEAAKKLKDL
IHSSSSSHVQKREKTSGFEFLDMTSYTRRARGIPRKDILKRIIKRYLKPF
AAKSEKPEIRQIVKEFEEFLDWGVESDTHQLFSIISQKADGKVHAIFIHF
NQREDGKFDYKHVLFNGRFRLAADMVIVRSTKSNFFSSSSKDVIRYLPRR
GLTGQDIRDLMELIVPKIASVVNDFVPADN Run BLAST on NCBI transcript from alignment at sc0000754:23739..25795+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029549 ID=TCONS_00029549|Name=TCONS_00029549|organism=Clytia hemisphaerica|type=transcript|length=2057bp|location=Sequence derived from alignment at sc0000754:23739..25795+ (Clytia hemisphaerica)
TGCAGACACAGCTTAATCCGTAACAGTGACCTTTTGACGTCATATGATGA
CAGATTAGTGGTTATGAAAGACTATAAATTAGCGGATGAAAATCGATCAT
AAAACAAAACAGATAAGTTCTGAACATTTTGGACATCAAACAACTTACGA
TGaagaattttgtatttttattacTGCTGATGGTAAGTTGACTTAATTCC
TTTGTCATGGTTATAACTCTGATAATTGTTGTGTAGTTGACATTTCTATT
GAACCAACTCTTCCCCTCTCCAAAAGCATTCTCCTTGCTCCATCTTCATT
TAGTCCTTCTTGATATTTCTGATTGATGGATAGATATTCATAACTTTCTT
AATGTTTATTGGCGAAGGTCATCAGTGTTTGTTGCGGCGAGGACgatgca
aaagacgtaaaaTCACCGCTCGATTACTTCACCAACCCCAAACTTGCTGC
AGCTGTCGAAGCAGCCAAGAAACTGAAAGATCTCATCCACTCCTCCTCTT
CAAGTCACGTACAGAAACGCGAGAAAACGTCCGGCTTCGAGTTCTTAGAC
ATGACTTCTTACACACGTCGCGCTCGTGGCATTCCGCGCAAAGACATTCT
AAAAAGAATCATCAAGAGATATTTGAAACCTTTCGCTGCNATAAATTAGC
GGATGAAAATCGATCATAAAGCAAAACAGATAAGTTCTGAACATTTTGGA
CATCAAACAACTAAAGATGaagaattttgtatttttattacTGTTGATGG
TAAGTTGACTTAATTCCTTTGTCATGGTTATAACTCTGATAACTGTTGTG
TAGTTGACATTTCTATTGAACCAACTCTTCCCCTCTCCAAAAGCATTCTC
CTTGCTCCATCTTCATTTAGTCCTTCTTGATATTTCTGATTGATGGATAG
ATATTCATAACTTTCTTAATGTTTATTGGCGAAGGTCATCAGTGTTTGTT
GCGGCGAGGACgatgcaaaagacgtaaaaTCACCGCTCGATTACTTCACC
AACCCCAAACTTGCTGCAGCTGTCGAAGCAGCCAAGAAACTGAAAGATCT
CATCCACTCCTCCTCTTCAAGTCACGTACAGAAACGCGAGAAAACGTCCG
GCTTCGAGTTCTTAGACATGACTTCTTACACACGTCGCGCTCGTGGCATT
CCGCGCAAAGACATTCTAAAAAGAATCATCAAGAGATATTTAAAACCTTT
CGCTGCGAAAAGTGAGAAGCCAGAAATTAGACAGATTGTAAAAGAGTTCG
AGGAATTCTTGGATTGGGGCGTGGAATCAGACACTCATCAACTTTTCAGC
ATCATTTCGCAAAAAGCTGACGGAAAAGTTCACGCCATTTTCATTCACTT
TAATCAACGTGAGGACGGGAAATTCGACTACAAACATGTCTTATTCAACG
GCCGCTTCCGATTGGCTGCTGACATGGTCATCGTTCGGAGCACCAAGAGC
AACTTTTTCAGCTCTTCCTCTAAAGATGTGATCCGGTATCTGCCGAGGCG
AGGACTGACCGGTCAAGACATCCGCGATTTGATGGAGTTGATCGTTCCCA
AGATCGCAAGTGTTGTCAATGATTTTGTACCTGCTGataattaaaagaaa
actttgtgCAATCTGTCGCAcaacaatttattttttaaggCACCTCAGAA
TTAATTAAAGATGGGTTCTATAAAAGGCTTGCAAGAAATTAATATTCAAG
TTGTTTCCAGCTTATACGTCTTATGTGTTTATTTCACAGAACACATACAT
ACCCGAAGTTTCCCCGATAAATACTGTAACCGTAACCGAGTTAGGGAGAA
TTAGCTCACAAAAGCCCCTAACCTTTTAAATAAATCATatgtggctgaaa
tttggcacagaggtTCCTTTTGGGTTCAAGAACCACCAAAAAACAACCGC
ATTCGATTCGAAAAGTTTTCGACCATTTTTAGTTCATTATAtatatgatg
acgtcattttccagtgcaaacaagattttcaaaaagttttgaagaataaa
ttttgattgttataccgtattactttgaataaacggccccttcgaataaa
cgccccc Coding sequence (CDS) from alignment at sc0000754:23739..25795+ >TCONS_00029549 ID=TCONS_00029549|Name=TCONS_00029549|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000754:23739..25795+ (Clytia hemisphaerica)
ATGaagaattttgtatttttattacTGTTGATGGTCATCAGTGTTTGTTG
CGGCGAGGACgatgcaaaagacgtaaaaTCACCGCTCGATTACTTCACCA
ACCCCAAACTTGCTGCAGCTGTCGAAGCAGCCAAGAAACTGAAAGATCTC
ATCCACTCCTCCTCTTCAAGTCACGTACAGAAACGCGAGAAAACGTCCGG
CTTCGAGTTCTTAGACATGACTTCTTACACACGTCGCGCTCGTGGCATTC
CGCGCAAAGACATTCTAAAAAGAATCATCAAGAGATATTTAAAACCTTTC
GCTGCGAAAAGTGAGAAGCCAGAAATTAGACAGATTGTAAAAGAGTTCGA
GGAATTCTTGGATTGGGGCGTGGAATCAGACACTCATCAACTTTTCAGCA
TCATTTCGCAAAAAGCTGACGGAAAAGTTCACGCCATTTTCATTCACTTT
AATCAACGTGAGGACGGGAAATTCGACTACAAACATGTCTTATTCAACGG
CCGCTTCCGATTGGCTGCTGACATGGTCATCGTTCGGAGCACCAAGAGCA
ACTTTTTCAGCTCTTCCTCTAAAGATGTGATCCGGTATCTGCCGAGGCGA
GGACTGACCGGTCAAGACATCCGCGATTTGATGGAGTTGATCGTTCCCAA
GATCGCAAGTGTTGTCAATGATTTTGTACCTGCTGataattaaATGaaga
attttgtatttttattacTGTTGATGGTCATCAGTGTTTGTTGCGGCGAG
GACgatgcaaaagacgtaaaaTCACCGCTCGATTACTTCACCAACCCCAA
ACTTGCTGCAGCTGTCGAAGCAGCCAAGAAACTGAAAGATCTCATCCACT
CCTCCTCTTCAAGTCACGTACAGAAACGCGAGAAAACGTCCGGCTTCGAG
TTCTTAGACATGACTTCTTACACACGTCGCGCTCGTGGCATTCCGCGCAA
AGACATTCTAAAAAGAATCATCAAGAGATATTTAAAACCTTTCGCTGCGA
AAAGTGAGAAGCCAGAAATTAGACAGATTGTAAAAGAGTTCGAGGAATTC
TTGGATTGGGGCGTGGAATCAGACACTCATCAACTTTTCAGCATCATTTC
GCAAAAAGCTGACGGAAAAGTTCACGCCATTTTCATTCACTTTAATCAAC
GTGAGGACGGGAAATTCGACTACAAACATGTCTTATTCAACGGCCGCTTC
CGATTGGCTGCTGACATGGTCATCGTTCGGAGCACCAAGAGCAACTTTTT
CAGCTCTTCCTCTAAAGATGTGATCCGGTATCTGCCGAGGCGAGGACTGA
CCGGTCAAGACATCCGCGATTTGATGGAGTTGATCGTTCCCAAGATCGCA
AGTGTTGTCAATGATTTTGTACCTGCTGataattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029549-exon-sc0000754-1491911889:23739..23920 | TCONS_00029549-exon-sc0000754-1491911889:23739..23920 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1510915933:23739..23920 | TCONS_00029549-exon-sc0000754-1510915933:23739..23920 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1575043694:23739..23920 | TCONS_00029549-exon-sc0000754-1575043694:23739..23920 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1491911889:24106..24487 | TCONS_00029549-exon-sc0000754-1491911889:24106..24487 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1510915933:24106..24487 | TCONS_00029549-exon-sc0000754-1510915933:24106..24487 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1575043694:24106..24487 | TCONS_00029549-exon-sc0000754-1575043694:24106..24487 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1491911889:24673..25795 | TCONS_00029549-exon-sc0000754-1491911889:24673..25795 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1510915933:24673..25795 | TCONS_00029549-exon-sc0000754-1510915933:24673..25795 | Clytia hemisphaerica | exon |
| TCONS_00029549-exon-sc0000754-1575043694:24673..25795 | TCONS_00029549-exon-sc0000754-1575043694:24673..25795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000754 | supercontig | sc0000754:23739..25795 + |
Blast
The following BLAST results are available for this feature:
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