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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029550 ID=TCONS_00029550|Name=TCONS_00029550|organism=Clytia hemisphaerica|type=transcript|length=1192bp
TAAGTTCTGAACATTTTGGACATCAAACAACTAAAGATGaagaattttgt
atttttattacTGTTGATGGTCATCAGTGTTTGTTGCGGCGAGGACgatg
caaaagacgtaaaaTCACCGCTCGATTACTTCACCAACCCCAAACTTGCT
GCAGCTGTCGAAGCAGCCAAGAAACTGAAAGATCTCATCCACTCCTCCTC
TTCAAGTCACGTACAGAAACGCGAGAAAACGTCCGGCTTCGAGTTCTTAG
ACATGACTTCTTACACACGTCGCGCTCGTGGCATTCCGCGCAAAGACATT
CTAAAAAGAATCATCAAGAGATATTTAAAACCTTTCGCTGCGAAAAGTGA
GAAGCCAGAAATTAGACAGATTGTAAAAGAGTTCGAGGAATTCTTGGATT
GGGGCGTGGAATCAGACACTCATCAACTTTTCAGCATCATTTCGCAAAAA
GCTGACGGAAAAGTTCACGCCATTTTCATTCACTTTAATCAACGTGAGGA
CGGGAAATTCGACTACAAACATGTCTTATTCAACGGCCGCTTCCGATTGG
CTGCTGACATGGTCATCGTTCGGAGCACCAAGAGCAACTTTTTCAGCTCT
TCCTCTAAAGATGTGATCCGGTATCTGCCGAGGCGAGGACTGACCGGTCA
AGACATCCGCGATTTGATGGAGTTGATCGTTCCCAAGATCGCAAGTGTTG
TCAATGATTTTGTACCTGCTGataattaaaagaaaactttgtgCAATCTG
TCGCAcaacaatttattttttaaggCACCTCAGAATTAATTAAAGATGGG
TTCTATAAAAGGCTTGCAAGAAATTAATATTCAAGTTGTTTCCAGCTTAT
ACGTCTTATGTGTTTATTTCACAGAACACATACATACCCGAAGTTTCCCC
GATAAATACTGTAACCGTAACCGAGTTAGGGAGAATTAGCTCACAAAAGC
CCCTAACCTTTTAAATAAATCATatgtggctgaaatttggcacagaggtT
CCTTTTGGGTTCAAGAACCACCAAAAAACAACCGCATTCGATTCGAAAAG
TTTTCGACCATTTTTAGTTCATTATAtatatgatgacgtcattttccagt
gcaaacaagattttcaaaaagttttgaagaataaattttgattgttatac
cgtattactttgaataaacggccccttcgaataaacgccccc Run BLAST on NCBI transcript from alignment at sc0000754:23852..25795+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029550 ID=TCONS_00029550|Name=TCONS_00029550|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at sc0000754:23852..25795+ (Clytia hemisphaerica)
TAAGTTCTGAACATTTTGGACATCAAACAACTTACGATGaagaattttgt
atttttattacTGCTGATGGTAAGTTGACTTAATTCCTTTGTCATGGTTA
TAACTCTGATAATTGTTGTGTAGTTGACATTTCTATTGAACCAACTCTTC
CCCTCTCCAAAAGCATTCTCCTTGCTCCATCTTCATTTAGTCCTTCTTGA
TATTTCTGATTGATGGATAGATATTCATAACTTTCTTAATGTTTATTGGC
GAAGGTCATCAGTGTTTGTTGCGGCGAGGACgatgcaaaagacgtaaaaT
CACCGCTCGATTACTTCACCAACCCCAAACTTGCTGCAGCTGTCGAAGCA
GCCAAGAAACTGAAAGATCTCATCCACTCCTCCTCTTCAAGTCACGTACA
GAAACGCGAGAAAACGTCCGGCTTCGAGTTCTTAGACATGACTTCTTACA
CACGTCGCGCTCGTGGCATTCCGCGCAAAGACATTCTAAAAAGAATCATC
AAGAGATATTTGAAACCTTTCGCTGCNATAAATTAGCGGATGAAAATCGA
TCATAAAGCAAAACAGATAAGTTCTGAACATTTTGGACATCAAACAACTA
AAGATGaagaattttgtatttttattacTGTTGATGGTAAGTTGACTTAA
TTCCTTTGTCATGGTTATAACTCTGATAACTGTTGTGTAGTTGACATTTC
TATTGAACCAACTCTTCCCCTCTCCAAAAGCATTCTCCTTGCTCCATCTT
CATTTAGTCCTTCTTGATATTTCTGATTGATGGATAGATATTCATAACTT
TCTTAATGTTTATTGGCGAAGGTCATCAGTGTTTGTTGCGGCGAGGACga
tgcaaaagacgtaaaaTCACCGCTCGATTACTTCACCAACCCCAAACTTG
CTGCAGCTGTCGAAGCAGCCAAGAAACTGAAAGATCTCATCCACTCCTCC
TCTTCAAGTCACGTACAGAAACGCGAGAAAACGTCCGGCTTCGAGTTCTT
AGACATGACTTCTTACACACGTCGCGCTCGTGGCATTCCGCGCAAAGACA
TTCTAAAAAGAATCATCAAGAGATATTTAAAACCTTTCGCTGCGAAAAGT
GAGAAGCCAGAAATTAGACAGATTGTAAAAGAGTTCGAGGAATTCTTGGA
TTGGGGCGTGGAATCAGACACTCATCAACTTTTCAGCATCATTTCGCAAA
AAGCTGACGGAAAAGTTCACGCCATTTTCATTCACTTTAATCAACGTGAG
GACGGGAAATTCGACTACAAACATGTCTTATTCAACGGCCGCTTCCGATT
GGCTGCTGACATGGTCATCGTTCGGAGCACCAAGAGCAACTTTTTCAGCT
CTTCCTCTAAAGATGTGATCCGGTATCTGCCGAGGCGAGGACTGACCGGT
CAAGACATCCGCGATTTGATGGAGTTGATCGTTCCCAAGATCGCAAGTGT
TGTCAATGATTTTGTACCTGCTGataattaaaagaaaactttgtgCAATC
TGTCGCAcaacaatttattttttaaggCACCTCAGAATTAATTAAAGATG
GGTTCTATAAAAGGCTTGCAAGAAATTAATATTCAAGTTGTTTCCAGCTT
ATACGTCTTATGTGTTTATTTCACAGAACACATACATACCCGAAGTTTCC
CCGATAAATACTGTAACCGTAACCGAGTTAGGGAGAATTAGCTCACAAAA
GCCCCTAACCTTTTAAATAAATCATatgtggctgaaatttggcacagagg
tTCCTTTTGGGTTCAAGAACCACCAAAAAACAACCGCATTCGATTCGAAA
AGTTTTCGACCATTTTTAGTTCATTATAtatatgatgacgtcattttcca
gtgcaaacaagattttcaaaaagttttgaagaataaattttgattgttat
accgtattactttgaataaacggccccttcgaataaacgccccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029550-exon-sc0000754-1491911889:23852..23872 | TCONS_00029550-exon-sc0000754-1491911889:23852..23872 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1510915933:23852..23872 | TCONS_00029550-exon-sc0000754-1510915933:23852..23872 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1575043694:23852..23872 | TCONS_00029550-exon-sc0000754-1575043694:23852..23872 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1491911889:24440..24487 | TCONS_00029550-exon-sc0000754-1491911889:24440..24487 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1510915933:24440..24487 | TCONS_00029550-exon-sc0000754-1510915933:24440..24487 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1575043694:24440..24487 | TCONS_00029550-exon-sc0000754-1575043694:24440..24487 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1491911889:24673..25795 | TCONS_00029550-exon-sc0000754-1491911889:24673..25795 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1510915933:24673..25795 | TCONS_00029550-exon-sc0000754-1510915933:24673..25795 | Clytia hemisphaerica | exon |
| TCONS_00029550-exon-sc0000754-1575043694:24673..25795 | TCONS_00029550-exon-sc0000754-1575043694:24673..25795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000754 | supercontig | sc0000754:23852..25795 + |
Blast
The following BLAST results are available for this feature:
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