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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029578 ID=TCONS_00029578|Name=TCONS_00029578|organism=Clytia hemisphaerica|type=transcript|length=1642bp
TCATTTTGAAGAAGGAGACGGAGTTGTACGGTTGTTCAATTAGAAATCGC
AAATATGTCAATCGTCGATGATGCGGAGTATAAAAATGCTTTACGTTCTT
GTTGGAGCATAGAGACAGATTTCGCGAAGTGGTTCCCTGATGAAATTGCC
GAGTGGATCCAATATCAGTCAACAATACTTGGTGTCGCACAACCGTATTT
ATCTATTCCGTTGTTGGTGGCCGTATCGTATTGCAGTCATCAATGCTCCG
TAACGGCAGGTGCTAATCATACCGAACCCCTTATATTGTATGGACTGGTT
GTGGGACGTTCCGGAACGAACAAATCAGCAGCCCTTCATAAGATTCTGGA
TATTGTGAAATCGATCGAAGTATCTGAAAGCCATACATTTGAATCCGGCA
CCATGGAGGGCCTCATGGTGGCGATGAGAGAAAATGAAGAATCCATATTG
GCAGTGTACGACAAATTCAGTTCGTTTTACGACAGCTTAGACAAAGGAAC
TGCCGGAAAGTGTGAAAAATCTAGATTTCTAACTTTGTATAATGGAAAAC
CCTGGTCGAAGAAAACCAAGACAAACGGTACAATGGAAATTGATTCACCA
CGTTACAACATGCTTGCTTTTACACAACCCTCGTATGCTGTACAGTTCGC
AAAAACGAACACATCTGATGGGTTCTATCAGAGATTTTTATTGAGTGTAC
CGAAAGAGAAATTTGTGAAATTCAATGATAAGAGGGAATGTTTGAACAAC
AAGAAAGAACTATTGGATTTGGAATCTGTTATCAAAAGGATTTATGAGGC
ATGCCGAAACAAAATGGAGTTGGAGTTTACTGATGCGGCCAACAGGATTT
ATGAACAGTTACACGATGAAGTAATCGAATACCGCCAAAAGGACGAATTT
GAGAAGGCAAAATCAAGCATTAAGAGTAAGTCTATTGggttatttttgag
aatttctgGTCTAATCTTCTTGATGAGAAAATGTTTAAGTGATGATCCTG
GATTTGGAGAATCAAATAAAATAGAGGCAGCTGATGCTCTAATGTCTTTA
CAAATCGTAAATTATTCCGTGCAAAACGTATTCTGCTTAGTCCCACCCAA
ATTCGAACAATCAGATGTTGTGACATCTCGTAAGTCAACTATGAAAACTC
CGTTGCCAGAACCAGAAAATCTAACTGTAGAGTATCTTCAGCAGTACCAA
AAGGTGACTAAACGTTTATTGCAACACGATACTGTCCCGTTAACCAAGAT
TACCAAAGATAAAGTTTACCCGATTATCAACGACACCAGTGGTTCCCAAG
TCGCCAGCAAATTTGTACGTGGGCTTCAACAACTTGGGTTTGGCAAAATC
ACCCCAACCTCCAAACACTTCAAACGTTTTCACCCCGATGATGAAAATTG
TCCAGATCGCGAATCTCTACGCAAAAAGtataaacttttgaatttgaatt
aatCCAAATTGATTACATTGTTTAAATATTTCCATTTTTGGTCACTTTTT
CGTTTAAACAAATTTTATCTTGTTTTTGGACGTTTTGGTTTCTAAATATA
ATATAGTTGATCGACCAGATTTTATGCATTTATTGGGAATTTTTTAATCT
GCAATTTGTTGTATGGAGTGTTTCCATGCGAGTTTAGCGCCT Run BLAST on NCBI protein sequence of TCONS_00029578-protein >TCONS_00029578-protein ID=TCONS_00029578-protein|Name=TCONS_00029578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MSIVDDAEYKNALRSCWSIETDFAKWFPDEIAEWIQYQSTILGVAQPYLS
IPLLVAVSYCSHQCSVTAGANHTEPLILYGLVVGRSGTNKSAALHKILDI
VKSIEVSESHTFESGTMEGLMVAMRENEESILAVYDKFSSFYDSLDKGTA
GKCEKSRFLTLYNGKPWSKKTKTNGTMEIDSPRYNMLAFTQPSYAVQFAK
TNTSDGFYQRFLLSVPKEKFVKFNDKRECLNNKKELLDLESVIKRIYEAC
RNKMELEFTDAANRIYEQLHDEVIEYRQKDEFEKAKSSIKSKSIGLFLRI
SGLIFLMRKCLSDDPGFGESNKIEAADALMSLQIVNYSVQNVFCLVPPKF
EQSDVVTSRKSTMKTPLPEPENLTVEYLQQYQKVTKRLLQHDTVPLTKIT
KDKVYPIINDTSGSQVASKFVRGLQQLGFGKITPTSKHFKRFHPDDENCP
DRESLRKKYKLLNLN Run BLAST on NCBI transcript from alignment at sc0000756:134104..135951- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029578 ID=TCONS_00029578|Name=TCONS_00029578|organism=Clytia hemisphaerica|type=transcript|length=1848bp|location=Sequence derived from alignment at sc0000756:134104..135951- (Clytia hemisphaerica)
TCATTTTGAAGAAGGAGACGGAGTTGTACGGTTGTTCAATTAGAAATCGG
TGAGTTGCTTTGTTGTTTGTTGAAGCTTTCACATTTCAAGTGATACAGAC
TAATTCTTTTTAAACTACGGTATAAGCAGACACATATCTAAATATTTGAA
ATTGATATCCATGATTGACGCAAAGATTCACTAGAATTAATAATAATCGT
CTGATCCTGTAATTACTTCGTTCATTTAAACTTTTTATTGTACTTTCGTT
CTTAGCAAATATGTCAATCGTCGATGATGCGGAGTATAAAAATGCTTTAC
GTTCTTGTTGGAGCATAGAGACAGATTTCGCGAAGTGGTTCCCTGATGAA
ATTGCCGAGTGGATCCAATATCAGTCAACAATACTTGGTGTCGCACAACC
GTATTTATCTATTCCGTTGTTGGTGGCCGTATCGTATTGCAGTCATCAAT
GCTCCGTAACGGCAGGTGCTAATCATACCGAACCCCTTATATTGTATGGA
CTGGTTGTGGGACGTTCCGGAACGAACAAATCAGCAGCCCTTCATAAGAT
TCTGGATATTGTGAAATCGATCGAAGTATCTGAAAGCCATACATTTGAAT
CCGGCACCATGGAGGGCCTCATGGTGGCGATGAGAGAAAATGAAGAATCC
ATATTGGCAGTGTACGACAAATTCAGTTCGTTTTACGACAGCTTAGACAA
AGGAACTGCCGGAAAGTGTGAAAAATCTAGATTTCTAACTTTGTATAATG
GAAAACCCTGGTCGAAGAAAACCAAGACAAACGGTACAATGGAAATTGAT
TCACCACGTTACAACATGCTTGCTTTTACACAACCCTCGTATGCTGTACA
GTTCGCAAAAACGAACACATCTGATGGGTTCTATCAGAGATTTTTATTGA
GTGTACCGAAAGAGAAATTTGTGAAATTCAATGATAAGAGGGAATGTTTG
AACAACAAGAAAGAACTATTGGATTTGGAATCTGTTATCAAAAGGATTTA
TGAGGCATGCCGAAACAAAATGGAGTTGGAGTTTACTGATGCGGCCAACA
GGATTTATGAACAGTTACACGATGAAGTAATCGAATACCGCCAAAAGGAC
GAATTTGAGAAGGCAAAATCAAGCATTAAGAGTAAGTCTATTGGGTTATT
TTTGAGAATTTCTGGTCTAATCTTCTTGATGAGAAAATGTTTAAGTGATG
ATCCTGGATTTGGAGAATCAAATAAAATAGAGGCAGCTGATGCTCTAATG
TCTTTACAAATCGTAAATTATTCCGTGCAAAACGTATTCTGCTTAGTCCC
ACCCAAATTCGAACAATCAGATGTTGTGACATCTCGTAAGTCAACTATGA
AAACTCCGTTGCCAGAACCAGAAAATCTAACTGTAGAGTATCTTCAGCAG
TACCAAAAGGTGACTAAACGTTTATTGCAACACGATACTGTCCCGTTAAC
CAAGATTACCAAAGATAAAGTTTACCCGATTATCAACGACACCAGTGGTT
CCCAAGTCGCCAGCAAATTTGTACGTGGGCTTCAACAACTTGGGTTTGGC
AAAATCACCCCAACCTCCAAACACTTCAAACGTTTTCACCCCGATGATGA
AAATTGTCCAGATCGCGAATCTCTACGCAAAAAGTATAAACTTTTGAATT
TGAATTAATCCAAATTGATTACATTGTTTAAATATTTCCATTTTTGGTCA
CTTTTTCGTTTAAACAAATTTTATCTTGTTTTTGGACGTTTTGGTTTCTA
AATATAATATAGTTGATCGACCAGATTTTATGCATTTATTGGGAATTTTT
TAATCTGCAATTTGTTGTATGGAGTGTTTCCATGCGAGTTTAGCGCCT Coding sequence (CDS) from alignment at sc0000756:134104..135951- >TCONS_00029578 ID=TCONS_00029578|Name=TCONS_00029578|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000756:134104..135951- (Clytia hemisphaerica)
ATGTCAATCGTCGATGATGCGGAGTATAAAAATGCTTTACGTTCTTGTTG
GAGCATAGAGACAGATTTCGCGAAGTGGTTCCCTGATGAAATTGCCGAGT
GGATCCAATATCAGTCAACAATACTTGGTGTCGCACAACCGTATTTATCT
ATTCCGTTGTTGGTGGCCGTATCGTATTGCAGTCATCAATGCTCCGTAAC
GGCAGGTGCTAATCATACCGAACCCCTTATATTGTATGGACTGGTTGTGG
GACGTTCCGGAACGAACAAATCAGCAGCCCTTCATAAGATTCTGGATATT
GTGAAATCGATCGAAGTATCTGAAAGCCATACATTTGAATCCGGCACCAT
GGAGGGCCTCATGGTGGCGATGAGAGAAAATGAAGAATCCATATTGGCAG
TGTACGACAAATTCAGTTCGTTTTACGACAGCTTAGACAAAGGAACTGCC
GGAAAGTGTGAAAAATCTAGATTTCTAACTTTGTATAATGGAAAACCCTG
GTCGAAGAAAACCAAGACAAACGGTACAATGGAAATTGATTCACCACGTT
ACAACATGCTTGCTTTTACACAACCCTCGTATGCTGTACAGTTCGCAAAA
ACGAACACATCTGATGGGTTCTATCAGAGATTTTTATTGAGTGTACCGAA
AGAGAAATTTGTGAAATTCAATGATAAGAGGGAATGTTTGAACAACAAGA
AAGAACTATTGGATTTGGAATCTGTTATCAAAAGGATTTATGAGGCATGC
CGAAACAAAATGGAGTTGGAGTTTACTGATGCGGCCAACAGGATTTATGA
ACAGTTACACGATGAAGTAATCGAATACCGCCAAAAGGACGAATTTGAGA
AGGCAAAATCAAGCATTAAGAGTAAGTCTATTGGGTTATTTTTGAGAATT
TCTGGTCTAATCTTCTTGATGAGAAAATGTTTAAGTGATGATCCTGGATT
TGGAGAATCAAATAAAATAGAGGCAGCTGATGCTCTAATGTCTTTACAAA
TCGTAAATTATTCCGTGCAAAACGTATTCTGCTTAGTCCCACCCAAATTC
GAACAATCAGATGTTGTGACATCTCGTAAGTCAACTATGAAAACTCCGTT
GCCAGAACCAGAAAATCTAACTGTAGAGTATCTTCAGCAGTACCAAAAGG
TGACTAAACGTTTATTGCAACACGATACTGTCCCGTTAACCAAGATTACC
AAAGATAAAGTTTACCCGATTATCAACGACACCAGTGGTTCCCAAGTCGC
CAGCAAATTTGTACGTGGGCTTCAACAACTTGGGTTTGGCAAAATCACCC
CAACCTCCAAACACTTCAAACGTTTTCACCCCGATGATGAAAATTGTCCA
GATCGCGAATCTCTACGCAAAAAGTATAAACTTTTGAATTTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029578-exon-sc0000756-1575043694:135903..135951 | TCONS_00029578-exon-sc0000756-1575043694:135903..135951 | Clytia hemisphaerica | exon |
| TCONS_00029578-exon-sc0000756-1575043694:134104..135696 | TCONS_00029578-exon-sc0000756-1575043694:134104..135696 | Clytia hemisphaerica | exon |
| TCONS_00029578-exon-sc0000756-1510915933:135903..135951 | TCONS_00029578-exon-sc0000756-1510915933:135903..135951 | Clytia hemisphaerica | exon |
| TCONS_00029578-exon-sc0000756-1510915933:134104..135696 | TCONS_00029578-exon-sc0000756-1510915933:134104..135696 | Clytia hemisphaerica | exon |
| TCONS_00029578-exon-sc0000756-1491911889:135903..135951 | TCONS_00029578-exon-sc0000756-1491911889:135903..135951 | Clytia hemisphaerica | exon |
| TCONS_00029578-exon-sc0000756-1491911889:134104..135696 | TCONS_00029578-exon-sc0000756-1491911889:134104..135696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000756 | supercontig | sc0000756:134104..135951 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR025048 | DUF3987 |
Blast
The following BLAST results are available for this feature:
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