TCONS_00029579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029579
Unique NameTCONS_00029579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029579 ID=TCONS_00029579|Name=TCONS_00029579|organism=Clytia hemisphaerica|type=transcript|length=276bp
CAACAACCCAACCAGCCAATAAGgccaaacaaaaatgataacgACGATAG
CTCAAATGAAAACCCTTCAAACCAAAACATGAACAAACCTACAGAAACAA
CCCCAACAATTAGAGAACTTAAGATAATTTACACAAATGCTGACCAAATg
acaagtaaaaagaaaaatgagctGTTAAAAACTGTAATCGCAGAACAACC
ACATATAATTGCCATCACTGAGGTAAACACCAAACGAGTCTCCGAGAGAA
AAGATCAAGACTACTCTTTCGAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000756:35323..35598

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029579 ID=TCONS_00029579|Name=TCONS_00029579|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0000756:35323..35598 (Clytia hemisphaerica)
ATTTTCGAAAGAGTAGTCTTGATCTTTTCTCTCGGAGACTCGTTTGGTGT
TTACCTCAGTGATGGCAATTATATGTGGTTGTTCTGCGATTACAGTTTTT
AACagctcatttttctttttacttgtcATTTGGTCAGCATTTGTGTAAAT
TATCTTAAGTTCTCTAATTGTTGGGGTTGTTTCTGTAGGTTTGTTCATGT
TTTGGTTTGAAGGGTTTTCATTTGAGCTATCGTcgttatcatttttgttt
ggcCTTATTGGCTGGTTGGGTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016891XLOC_016891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029579-exon-sc0000756-1491911889:35323..35598TCONS_00029579-exon-sc0000756-1491911889:35323..35598Clytia hemisphaericaexon
TCONS_00029579-exon-sc0000756-1510915933:35323..35598TCONS_00029579-exon-sc0000756-1510915933:35323..35598Clytia hemisphaericaexon
TCONS_00029579-exon-sc0000756-1575043694:35323..35598TCONS_00029579-exon-sc0000756-1575043694:35323..35598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000756supercontigsc0000756:35323..35598 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.61873	1.84001	2.69648	0	3.33244	0.555659	0.670379	0	0.439398	1.30928	0	0	0.517088	0.360141	0.936806	1.16314	0.391435	0	0	0	0.304578	0	0	0.615927	0	0.999279	0	0.833838	0	0.921127
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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