TCONS_00029599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029599
Unique NameTCONS_00029599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029599 ID=TCONS_00029599|Name=TCONS_00029599|organism=Clytia hemisphaerica|type=transcript|length=1522bp
TAGGGAGAAGACGGCACAGACAATACCCCTAAAGAAAAGCAACGGAAATT
AAACCCTAATGTAAAGAGGGTATTATTCACTGGTCTTACGGGTACAACTG
TTCATCGTCTACGCCAGAATGTTGTGAAACTAAAAGGTGAATTGGCAAGA
GGAGTCAACAACTGCACTCATCTCGTTGCTCCAAAGATTACTCGTACAGT
GAAGTTCTTATCAGCGGTCAGTATTTGTAAATTTCTGGTGGCTCCTGCAT
GGGTTGATGATTCTTTTGAAGCAAAATCTTTTCTGGACGAGTCGACTTAT
ACCTTGATCGATCCTGAATCTGAAGACCTGTTTGGCTTCAAGTTAAAAAG
ATCCCTTCAAAGGGCTCAAACAAGACAAGTTTGCAAAGGATTACATTTCC
ATGTGACGCCAGCCATTTTGCCAGCACCGAACGCGATGAGAGAAATTATC
GAATGTGCTGGTGGAAAAATGACAGAAGTTAAAACAGTTGATGAATTAGT
CAACGTTTTTGTTCACAATGCACAGAATGTGAGTANGATGACAGAAGTTA
AAACAGTTGATGAATTAGTCAACGTTTTTGTTCACAATGCACAAAATGAC
CCTTCATACAACAGCTACTTAGTTTCATGTGGAGATGATAAGAATCTATG
GGCTGACATCGTTAAAGATGGCTACGATATTTACAATGTTGAATTGATTT
TATCTGGCGTTATGAAACAAGAACTTGAATGGAATCTGCATCAtttgtaa
aatacaaaataatcaTCATCCGCAAAACTTGTACTAATGGTTCCGTTTTA
TTTTcaaaccaattttcaaaaaacattgcAGTGCAGTGCAGTACCTACTT
TTCGAAAGTTGGATTACTGTATACTCGATACTTGATTTTATTACTTTGCC
TTTGCTGGTGGATTGGAGTGACATGTATTCGTCTTACTTTCAATGAACTT
TGAATTGTTCATTTGTATCATTGACTGCATTCGTTGTAAAGACTGGACAT
ACTCTCCACAGGCTCTTATAAGTTCACCAAAGCTTCTGAGGATGCAATAT
ACTGGAATACCAGTATTCTTTGTCGTAAAATACCGGAATATTGTCACCGa
tataaaaaattttgcatgGCGAAATTTGCCAAGAACCGGTCAAAGGAAGA
CTTGGTGCCGAACTTTGAAGTCTAGTACCGTCCAAGTAAAAAGGATCAAG
CATCACTGGTTTCTAGGAAGCCTCCCTCAACGAAAAAGACTGGAAAGGAG
TGTCTTAACTCCAGTCAACCAAGTCAACTGGGTTTTTTATAAGTAGGACA
ATATAAATTATTTAGAcatttttaagcctaattttCTAATCATTTCTTGt
gtatataatattttaattcatttttttgacGTCTTCTTTAGTAATGATGA
AACTGTTAAAAATTTCtagcaaaaaaaagtttcttatatagtttcttATA
GTTTCTATATCGGAAGtttatctatagaggtctgtgattcagattACTGA
ATTCCAGTCTCCTTGATGTCTG
Run BLAST on NCBI

protein sequence of TCONS_00029599-protein

>TCONS_00029599-protein ID=TCONS_00029599-protein|Name=TCONS_00029599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MREIIECAGGKMTEVKTVDELVNVFVHNAQNVSXMTEVKTVDELVNVFVH
NAQNDPSYNSYLVSCGDDKNLWADIVKDGYDIYNVELILSGVMKQELEWN
LHHL
Run BLAST on NCBI

transcript from alignment at sc0000757:21193..32889+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029599 ID=TCONS_00029599|Name=TCONS_00029599|organism=Clytia hemisphaerica|type=transcript|length=11697bp|location=Sequence derived from alignment at sc0000757:21193..32889+ (Clytia hemisphaerica)
TAGGGAGAAGACGGCACAGACAATACCCCTAAAGAAAAGCAACGGTGAGT
ATTGTAGATATGATTAAGAAAAATTCCATCCACTTTATAAACCAGCTCGA
TTACTTGAACTCTTTCAACTTTCCAGTTCTGAACTTGAGGTCTCAATGAT
TAAGGAATGAGAAAAAATNCTTGAACTCTTTTAACTTTCCAGTTCTGAAA
TTGAGGTCTCAATGATTaaggaatgaaaaaaacacgaaaatgaaTCCTCG
ATTCTTTGGTAAAATCTTCAACCCGAATCTTCAACGTAGGCatgcaaaat
agaaaattaacCACTCGAAATTTTCCATAATTTCACCATCAGTTATCATT
ACTATTCGTCccagagaaaaaaaaatgcaCCAAAACTCTTTTGAAGCAAA
AAAGAtcaattttccattttcaaCATGTGTGTGATCAAATAACGTTTGAT
TACGCCTGActgttgatttttttatatttaactTTAGGAAATTAAACCCT
AATGTAAAGAGGGTATTATTCACTGGTCTTACGGGTACAACTGTTCATCG
TCTACGCCAGGTTTGTACATGTTTTTCGTATCTCATAACAAGGGCTTATA
TGTTAAGGTTTTCATGACATTAATATGCCCGGTTTTTTCCCTTAGtggta
aatttaaaaaatataagcTTGTGAAAAATTGATTACTCTAATCGGATTAA
CTCTTGCAAAATTAATAttcgcgatttcgcgaatttttgccaatttcgcg
aaattaaaactcgcgaaaacgcTTCAGATTCttaactcgcgaaattaaat
ccaccacaaaatttttaaattgttatttTCGGTGGAGAAACCAAtccaaa
aaatggctatttttcagttgttttcaggcttattcgcgaaattaaatcca
cacgaaatttttcaaaacactcGACTCGCGAAATTGAATCTCGTGaaatt
taatttgattaaaGTAAAATTTGCAACTACTGAggaaaatcatgaatttt
caataACCAACAAAAAATCTTACTTTAGACCTTACGAaaaatcgttcgta
aggctgtcttttgggaacTTCCCCGACATTAcgtagagtttttgttgatt
aagagggtcttacgtgacttttccttccgttcaaaactcTTTGAACGTAA
GTAAACTCTACTTAAGACCTTAAAACAatacgtaagcttagggaatttcc
cattctctaaggtcttaagtaaaacTTTACGTGcgtgtgaaaaaagctta
agggtacaaattttcgcggggattatatttcgcgaattttcgcgaatttc
gcctctttcgcgaaatataatccctcgcgaaaattttcaaacactcATCT
CTCgctaaattcgcgaaatttaatcctcgcgaaaattaagttttttacgC
TAAAAATTCTTTTAGCTAAGAAACTCTCTTGAATGAGTCTCCATTACTGG
Aatgtctctataattcgaataaattttcattcctcaaactaacgaaaaat
gtgaaaatatgaaaaagttcGCCAATTCGCGAAATaaaatcctcgcgaaa
atttacAGTCGAATTTAGTCGCGAAaaaataagtcccgcgaaaattaaat
tatttctcGAGGGAAGCtgtctcgcgaaaatttgttgccgcgaaaatttg
tacccTTAAGGTGCTTGATCTTCAGATAACGAGACAGCCTTTAGATGGTG
GTTACAAGACTAACATTAATAAACTTCTTTTGCAATTAACTTTCATTAAA
TCTTTGTTCTATTCTACAGAATGTTGTGAAACTAAAAGGTGAATTGGCAA
GAGGAGTCAACAACTGCACTCATCTCGTTGCTCCAAAGGTGAGTCTTATG
TTCCCTTTAAATTCGAACATTTTCTTCTAGATGGACACCTTGTCGACACA
ACGTTCAAAacacgtccatctaacgttaatTGTACGTTCAAACGACGTTG
TGAACCACCTTCTTGGTAGTAAAAATGGGTATCATTCACATATCCAAGCG
GAGGGGGGGGTATGTGTGAGCCATTAGGGCCCCTTTTCAAAACCCTCAAA
AGTCACTCACAGGGGTAAAACAGCAATCTAGTCTCTGAAAAGGTCCCAAA
TattatgaaatatcaaaaattgactTCCTCACTTCCTCCTTAATGCTCGT
AATTTggatttaaattttgaaatttgggtGAAAATGGGGAcgtgaaaatg
tcaaaaagagGCAATATCTCTGTATGCAAAGAAAACTTATTTATCAATAT
GTATCTTGCCTTGATTTTCCTTTCATGGGAAACTAAGATTTTTATATCAC
AAGCTGGTTGACGAGAATTTTTCACTACCGGTGCATTTTTATTTAGTTTG
ATATTTCGGATTCTCCTCTTCATGGATTTCCTTTATTCTATTGAATTTTC
CATGTTTAAATATTCTCTTTCAATCGATATTCAAAGGTGATAAAATGACA
CCCGCGAATGATTAaggaaaaaaaagtatacacgtttttttataagaaca
tccagaatttttgaaaccttcggatgttcttaactttttcagatttaagc
ctaaaaatgttcttaacgtgttcttattttcgccattttgtgggtatttt
tgtaccttttttctaagaaattgggtgtccccaaagccttaaattttctt
aacttgttctcaacatTGTGGCcatcttatgttcttataaagtttgttct
tataaaaaaaccgtgTAAATCACagactttcttttttcttgaattttttt
ttccaggcTGACCAGTGGTTTATTCTTATAATTTTTCTCTAAACATATGA
GATGCCTGCTTTTGGATCACTCTGAGTCTGTTGTTTAATGTTGAATTCGT
TCAACATTCGTTCAAGGTAATTTGAATGACCTTTGACGCTAACATTTCTT
ACGTGGAAATGTCGAGAAATCCTGTTTTGATAaacaattattttcttttc
gaaaCCTTCAAAGATTTTCTCGATTACATTATATATAAGCTTCGATAGTG
CCTACTATGGGATCATGGGATGAGTTGAATATCAGATAAGCTAACAAAAG
ATTCTCAGCATGGAATTGATTCTAAAAAGGCGTGGCTGAAAACTGTTAAA
GAGTGGCTcaattgagttttaagcctagaaTTTAAACTTTTTGGTGGGGG
AATGAAACCCCTTATTTCCCATCTGAAATGTTTACACGTctggttttcac
acaaatacAAATTGAAATTGGAATCGCcagattttggaaaatatgtcgcg
tgaaaacaaagaaagcactagattcaatccgtcattcttAAAGCAGCGCA
AATCTTAAAGCTTTAatacttttctttctttcaaaaggtTGAAGGTTCTT
CTCTAACCCtccgggctttaaactcaatgggctcAACTGTAGAGTTTCCA
CATCCAGCACCAACGCTGTACTAAAAAGTAACTTTTTAGTCTCTGGAAAA
GTCTATGTTATGTATTTTTTGGAGGGGGATgaataaaaactattttttgc
atAGAGTGCAGAGGGGTTGAAGCCCCCCTGAAGGTTCAGCCCCCCCCAGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TATGTTTTCTTCTTTGATTTCTAGTTATTAACCATTTTTTTTCACATGCC
TGAAAAAAATGTCCCGTTACACATTGCATACGTAAACAGTAAGATAAAGC
GATAAAGAGGGATAGGTTTCTccttgtttacagaaagaaaattaaaagta
attttctctTTCTCGTTTCTCCCTCACCACCACCTCCCTTACTTTAGTAG
ATAAATATCTTAAAGTGAAGaaagactttgtgaaaaaattagaaaaataa
agaaaatgaagaggaTTTATAAACGAATTTTTATTGGATACGGAGAGGag
gtttttttctttctttttgacagctggatttcatcaaaattcaaattgtc
TTGCGTCAATAAAATTAACAGCCCCAGGAAGAATCTTAGTTGTCACCAAA
ACGACGTTTCTTTCGGTGGATAGAAGAATCGAGTTATAAAATTATTAGCT
CTACTCCTCATACATTGATATTTATCCGAAAGTAGATTTTCCAATggttt
ttccgtacaatattggTGATTAAATACTCAGGGAATACGTTATTGCGTTT
GATATCCACGTACAATACTACTGATAATTTCAAACACTTCCTCATCAGGA
AATAATCGAATACGGTAAAAGGGCTAATTTACCAACGACCTCATTCAGTC
AGGAtctaaagaaatcaaaactaaCCGTCTCCGTCGTAGGAAGAACTCAT
CCAAAAGACATACAAGTCAATTTAGATTTACAGTTGAACATTAAAAACCG
TTGTGTTCGACGCCTAGACGTTTGTCTTTATCAAGTTACACTCATACATA
ATCTGAACCAATGGAGCGccgttttatcaaaatatttgccATTGTTATCG
GTACAATAATAGCACTCTTAATTATCGCTGCAGCATTCTTTATAAAGAGG
TGGAAAGACTCGAGAGCCAAAGATTTCGATTTGGAAGATGGCGGCGCCAA
GATTGTGAATGTGCATCGAATAAAATCGGACAGTTTTGATTACTTTGATG
ACGTCAATGAAAATCTTATCGATCATCGGAAACTTGGCAGAAACTTTTCG
CTCTGATGGTCTTTCGTTTTGGTTTTTTTGGTGTTTGAAGttaatcttaa
aatcttaaGATCTTAAAAacgaattcaaaaaatattaagaGACGGAAATA
GGCAAACCCTAGATTTATTCAAATCATGACAAGCGAGTTGACTGAAGCCT
TTTGGAACGACCCGCAGTTTTGACTAACAAAATCGAGGTCGGTGAAAGtg
ttgatttaccgtcgtcctcaacAATCCAGATCTAGACAAATCAAAAGCTA
TAACCGTCTCCGGCGCTGAAAACATAATCTTGAACTTGCTACACGCTTTT
TGGTGTATCATGATGGtgttattcttagcatattcttaattttttttgac
aatttcatcataatattcttaaagaaaaaaattaaattacctTTGATAAC
GGCGACAAATTTTTGTGATTAGATagtgatgttttttttataagaacatc
caaaatttttgaagcgttctgatacttttacctttttgagttgtaagctt
aaaattgtttttaacatgttcttattttcgccattttgtgagcatttttg
gccattttcttaagaaatcaggtATTTTACAgcctacaaagccttaaaat
gttcttaacttgttcttaatgttctggccatcgaagccttatgttcttgt
ttgttcttataaaaaaaaacgccaTATCATAACGTTCCACGCCATAAAAT
CCAaacagttaagaacatccgaaggcttcaaaaagtttggatgttcttaa
aaaaacatgtatatacATAACGTACCTGATTCTCCACACTAACGCCATAG
CTCTAAAAGACGGGCAGTGTTTCTTACAGGAGAAGACTGGAACTAGTCGC
CCATCAATTTACTGACATCCAGGGGGGGGAGCGGTGCTTATATCTCAGAC
TTATATTTGTACTACGAGCTAGAATAATTTTCTGCAAACCACCACCTCAA
TTTAGAGAAGTAGTATTTTAGTACACTAATTTTTTCTGGACATTTTAACA
TAGTGGCCAACCCCTAATTTGGTCTTCTCGGGACCATTTAAATTGTGTGA
GATTTTAAATACTGACTCCCCTTCCCTGAAGGGACCCTGACCCCTAAGAT
GTGGCCTTATGCATCAAGTTGGGGTATCCACACAATTTCATGaatcattt
ttttgtttgataaaaattttttatccgggGGGGAGAGAAAAAATCGAATA
GAAATTAACAAGAAGGGGGCATTTATTAGGGACCTTAGAGTCATGGATAT
TGAACAAATAAGTTCAAtgattttgtgtctttttattgcCAAATTATGGG
TACTGGTtattgaaatacgcattattagtgcttctttgatgccagttaac
aattataaaagttatttcaaacttttagagttctgttcaaaaaaatttcg
cggataagacctttccaaatttccattagGACTTAAGTACTTTCTCGTTA
ATTTCAGATTACTCGTACAGTGAAGTTCTTATCAGCGGTCAGTATTTGTA
AATTTCTGGTGGCTCCTGCATGGGTTGATGATTCTTTTGAAGCAAAATCT
TTTCTGGGTAAGCGATTTCATTGTTAATTTATCTCTTCAGGAGTTGGACA
TTGATTTCCAGCGTATTGAGCAAATGTGGATATTTATTAGTTTAGTGGAT
ACTATACTATCTAATTTACATTGTAACTCTCCCTATTtttattaccttaa
gggaagaaattttcgcaggaACAAATTTTCCCAGAATTTAATTTTAGCGG
CTTTTcgacaaatccgcgaaattaaattccgcgaaacacaaatattctca
tgatttaaaaaatcacctataaaattggtctttttagggaaTAATAGGCC
AtactttaaacaaaaaatcctcTCAACTGCGAAactaaattccgcgaaaa
tttcttcctttaaggtattccATTTCGTTTTAGACGAGTCGACTTATACC
TTGATCGATCCTGAATCTGAAGACCTGTTTGGCTTCAAGTTAAAAAGATC
CCTTCAAAGGGCTCAAACAAGACAAGTTTGCAAAGTAAGGTCAAAGAAGG
GTCGTACCCACAGATTTTTAAAgtccaaagggctagatgtcgtgctttaa
gccatcgcagaaaaaaaattgaatataggaaaaaatattgttgtttttgt
tttcgaaaatccgcaaagcttctgattgttcaagcgctgaaattctattg
taatgtcacgttacctaggtaggatttcctacctaaccgtTGCACACTTT
TAAGccgaagcacgacatctagcctttcgggctttataaatctacgGTCG
TACCATGGGGTCCAAAACTTAACCCTTAAAGGAGAGGAAATACCagtgat
ttttctaagcactttttaaTCTAAGATGANCCCTTAAAGGAGAGGAAATA
CCagtgatttttctaagcactttttaaCCTAAGATGtgtttttgaaactc
aatcccAATTCAAAAAGctattttctagcaaaactgAACTTGTTGGTTGT
TTACAAGCAAAAATAACTTAAATTATCTAcatattcaagattttttcgGG
AGTTTCGCCCTCTGAACACCCAGCAGACCCCCAGCTATATCAATGTACAG
CTTCGCTGAGCGAATTCCCTTTCAGGCTTATAAGAAACTCAATCTACATT
TACAAAAACGGCCTCTGCTCAAAGTCTTGGAAAACTCCCTGAATAGCCAT
AAATTATCCTAAGAATACAGATTTATAAACTTCACTGAGTTCTATTAGAC
CACGTCCACACGCTACGGCCCGGTTCCGTCTCGCTCCGATACGAAATGAA
GCcatcacttctaaccaatagaatggcttcgaTTCGTCTTGAAGCGAAAT
GGAACCGTTACGTGCGAACAAATCTTAATCGTGTTTTGTAACTTGAATGG
GATTTAGGAAGGTTGGAATACTATTACTTCATAGGTAGAAAATTCTtcgt
caaaaaatatttcttggcaaaaaatttcttcactttctattatttttttc
tgttctATTTTCCACTTTTTACAGACAAACAGTTTTTGCCGACGAATTTT
CGATAGATGAGATACTTTTCAGTCCTTTTTCTGCAGAGGTTCTTAGAGGT
ACCCCAGCCCAACAACCCAATATCTTTCTTCCTTATTATGTATACAATAC
CATGAAAATCTTTCTCATCTTTCATGTTTTCAAATAGGGATTACATTTCC
ATGTGACGCCAGCCATTTTGCCAGCACCGAACGCGATGAGAGAAATTATC
GAATGTGCTGGTGGAAAAGTATGACCCatattcaacaaaattttatttGC
ATTTCCCGGTGTTAAAcgatttttcttctttggatttttttaagcttGCA
TAAAATGCATGAATTttacaaattcaaatttacagaattgcacgtttttt
ataagaacatctaatatttttgaagccttcggatgttcttaacttgagtt
tttttaggctttttgagcctaaaaatgttttgtaacatgctcttattttc
accattttgtgggtatttttgtccattttcttaaagaatcgggtgtttta
gtcgtatagccttaaaatattcttaacttgtacTCAATATTTGGGTCATC
GATGCCttacgttcttatatagtttgttctaataaaaaacgtgtaaagaa
tttttttctcatgCTCTAACTCGATGTACTTTGTTTATTAGATGACAGAA
GTTAAAACAGTTGATGAATTAGTCAACGTTTTTGTTCACAATGCACAGAA
TGTGAGTANGATGACAGAAGTTAAAACAGTTGATGAATTAGTCAACGTTT
TTGTTCACAATGCACAAAATGTGAgtatatataaaaacaaattcaatctt
tttttactCCCAAAATAATTTCAAGTCTCTTTCAAGGACTTTTACGGTTA
ATTTATATTCGTGAagatgttatattttttttcacgcGAAATCTGTTatc
caaaacaaaacattttttttaaatttaccaaCTATTTGGTATGTCTTACC
CTTTAATAGACTCGCATTGCTGCATCATCACAAATATTTaaggaaaagtt
ttttatagCACTCTTGATGCATTTACCCCACTGTTGAGTAGTgttaccat
tagggtaccactgcGATCAAAGATTTGTTTCACTATTTGACCTTAACCCT
TTGAGCATCTTcctaatattttcaaaagggGAAGCATTTTTACCAAACAT
ATCGTTTCAGTATAATTTGATACACCCTTAGAAAAAAAGCCAATTAGATT
ATCAAATTTCACTGGAATTGAGAAACTGCCTCCAGTGTTTCTATAAAGCT
TATTGATTTATCTCCAATTGGGCTGTTCCATGAAATTTCCATACTGTGTC
ATACAGAGGGGTGGACAAACTTCTTCAAGGCAAAACAAAAGACTCTTACA
AATGTGtaaataccccctggaaaatgacaaaagtaccctttgaaaaatta
ttttcataccttaaatgTGAgggttgtctgtacacaaacccaatatctac
ggctaatttcaaaattcattgccgtagaactacgctacgataatcgtgag
atacactctggtacagagtaatgtgagggtggacgaactaaaatctgTCT
TTTGCCccctgaaaattttagaataaccttTTACCCtcttgaaagatgaa
aaaatgctTCTTTACAGCCCCTGAAGAATCTTCTCCGATCACCCCCTGGA
GAATCTTTTCCGATtaccctggaaatgttcgtccaccccctggatggata
taaaatggaatgaacCATCTTAAGCAAACTTTACCTCATTACTTCTACGT
AGGACCCTTCATACAACAGCTACTTAGTTTCATGTGGAGATGATAAGAAT
CTATGGGCTGACATCGTTAAAGATGGCTACGGTAAGTTTCATAATTAAGG
GAGTGGGTTCATATTCCTTTATTGGGGGTTGAATCCCTTGTTGGGGCATA
CCAAAGGCTTTGTACCTCTTACAAAAAAAGTACTTAATGCCTGTCTGCTT
AATTCTTAGTAATTAAAGAGAAGGATCTAGGACAATCGGTGAAATCCAGG
AGGGAGAGTGGTGCCCTCCCCCACATTCGGGtaaatagctatcgaaagaa
gaatctttgggtcgcctccgactgtggtCGTGAACTTACTTACTTAATGC
ATCAAACCATTTGCTTTTAGATATTTACAATGTTGAATTGATTTTATCTG
GCGTTATGAAACAAGAACTTGAATGGAATCTATATCCTTTTCATGTTGGT
AGTGTTTTACTTCTATACAAAGTCCTTTAATGACCTCTCTCTAGGGCCAT
GGGAAGATGGGAAAACAAGGAATTATGGTCGTTATCCACTTAGCTTGGTT
ATTGCATGAATTAGATAAATTAAGGCTTGTCGCTTTGCACGCCGTGAGCT
AATTTTAAAGTGGACCTTTAAATGTTTAGATAATAGGGGCTtgagtgata
ttttttttcaatatagaTTTAATGGCTTGATTAACAGTTAGCTAGCTTTA
CTCTGTTAGAAGCATTGTTTACCTTAACAGTTATGTTCACGCATCATTTG
TAAAATACAGAATAATAATCATCCGCAAAATTTGTACTAATGGTTCCGTT
TTATTTTcaaaccaattttcaaaaaacattgcAGTGCAGTGCAGTACCTA
CTTTTCGAAAGTTGGATAACTGTAAACTCAATACATATGTGATTTGTATT
ANTTATGTTCACGCATCAtttgtaaaatacaaaataatcaTCATCCGCAA
AACTTGTACTAATGGTTCCGTTTTATTTTcaaaccaattttcaaaaaaca
ttgcAGTGCAGTGCAGTACCTACTTTTCGAAAGTTGGATTACTGTATACT
CGATACTTGATTTTATTACTTTGCCTTTGCTGGTGGATTGGAGTGACATG
TATTCGTCTTACTTTCAATGAACTTTGAATTGTTCATTTGTATCATTGAC
TGCATTCGTTGTAAAGACTGGACATACTCTCCACAGGCTCTTATAAGTTC
ACCAAAGCTTCTGAGGATGCAATATACTGGAATACCAGTATTCTTTGTCG
TAAAATACCGGAATATTGTCACCGatataaaaaattttgcatgGCGAAAT
TTGCCAAGAACCGGTCAAAGGAAGACTTGGTGCCGAACTTTGAAGTCTAG
TACCGTCCAAGTAAAAAGGATCAAGCATCACTGGTTTCTAGGAAGCCTCC
CTCAACGAAAAAGACTGGAAAGGAGTGTCTTAACTCCAGTCAACCAAGTC
AACTGGGTTTTTTATAAGTAGGACAATATAAATTATTTAGAcatttttaa
gcctaattttCTAATCATTTCTTGtgtatataatattttaattcattttt
ttgacGTCTTCTTTAGTAATGATGAAACTGTTAAAAATTTCtagcaaaaa
aaagtttcttatatagtttcttATAGTTTCTATATCGGAAGtttatctat
agaggtctgtgattcagattACTGAATTCCAGTCTCCTTGATGTCTG

Coding sequence (CDS) from alignment at sc0000757:21193..32889+

>TCONS_00029599 ID=TCONS_00029599|Name=TCONS_00029599|organism=Clytia hemisphaerica|type=CDS|length=1575bp|location=Sequence derived from alignment at sc0000757:21193..32889+ (Clytia hemisphaerica)
ATGAGAGAAATTATCGAATGTGCTGGTGGAAAAATGACAGAAGTTAAAAC
AGTTGATGAATTAGTCAACGTTTTTGTTCACAATGCACAGAATGTGAGTA
NGATGACAGAAGTTAAAACAGTTGATGAATTAGTCAACGTTTTTGTTCAC
AATGCACAAAATGACCCTTCATACAACAGCTACTTAGTTTCATGTGGAGA
TGATAAGAATCTATGGGCTGACATCGTTAAAGATGGCTACGATATTTACA
ATGTTGAATTGATTTTATCTGGCGTTATGAAACAAGAACTTGAATGGAAT
CTGCATCAtttgtaaATGAGAGAAATTATCGAATGTGCTGGTGGAAAAAT
GACAGAAGTTAAAACAGTTGATGAATTAGTCAACGTTTTTGTTCACAATG
CACAGAATGTGAGTANGATGACAGAAGTTAAAACAGTTGATGAATTAGTC
AACGTTTTTGTTCACAATGCACAAAATGACCCTTCATACAACAGCTACTT
AGTTTCATGTGGAGATGATAAGAATCTATGGGCTGACATCGTTAAAGATG
GCTACGATATTTACAATGTTGAATTGATTTTATCTGGCGTTATGAAACAA
GAACTTGAATGGAATCTGCATCAtttgtaaATGAGAGAAATTATCGAATG
TGCTGGTGGAAAAATGACAGAAGTTAAAACAGTTGATGAATTAGTCAACG
TTTTTGTTCACAATGCACAGAATGTGAGTANGATGACAGAAGTTAAAACA
GTTGATGAATTAGTCAACGTTTTTGTTCACAATGCACAAAATGACCCTTC
ATACAACAGCTACTTAGTTTCATGTGGAGATGATAAGAATCTATGGGCTG
ACATCGTTAAAGATGGCTACGATATTTACAATGTTGAATTGATTTTATCT
GGCGTTATGAAACAAGAACTTGAATGGAATCTGCATCAtttgtaaATGAG
AGAAATTATCGAATGTGCTGGTGGAAAAATGACAGAAGTTAAAACAGTTG
ATGAATTAGTCAACGTTTTTGTTCACAATGCACAGAATGTGAGTANGATG
ACAGAAGTTAAAACAGTTGATGAATTAGTCAACGTTTTTGTTCACAATGC
ACAAAATGACCCTTCATACAACAGCTACTTAGTTTCATGTGGAGATGATA
AGAATCTATGGGCTGACATCGTTAAAGATGGCTACGATATTTACAATGTT
GAATTGATTTTATCTGGCGTTATGAAACAAGAACTTGAATGGAATCTGCA
TCAtttgtaaATGAGAGAAATTATCGAATGTGCTGGTGGAAAAATGACAG
AAGTTAAAACAGTTGATGAATTAGTCAACGTTTTTGTTCACAATGCACAG
AATGTGAGTANGATGACAGAAGTTAAAACAGTTGATGAATTAGTCAACGT
TTTTGTTCACAATGCACAAAATGACCCTTCATACAACAGCTACTTAGTTT
CATGTGGAGATGATAAGAATCTATGGGCTGACATCGTTAAAGATGGCTAC
GATATTTACAATGTTGAATTGATTTTATCTGGCGTTATGAAACAAGAACT
TGAATGGAATCTGCATCAtttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016907XLOC_016907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029599-exon-sc0000757-1491911889:21193..21236TCONS_00029599-exon-sc0000757-1491911889:21193..21236Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:21193..21236TCONS_00029599-exon-sc0000757-1510915933:21193..21236Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:21193..21236TCONS_00029599-exon-sc0000757-1575043694:21193..21236Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:21680..21752TCONS_00029599-exon-sc0000757-1491911889:21680..21752Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:21680..21752TCONS_00029599-exon-sc0000757-1510915933:21680..21752Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:21680..21752TCONS_00029599-exon-sc0000757-1575043694:21680..21752Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:22962..23030TCONS_00029599-exon-sc0000757-1491911889:22962..23030Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:22962..23030TCONS_00029599-exon-sc0000757-1510915933:22962..23030Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:22962..23030TCONS_00029599-exon-sc0000757-1575043694:22962..23030Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:27850..27949TCONS_00029599-exon-sc0000757-1491911889:27850..27949Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:27850..27949TCONS_00029599-exon-sc0000757-1510915933:27850..27949Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:27850..27949TCONS_00029599-exon-sc0000757-1575043694:27850..27949Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:28326..28426TCONS_00029599-exon-sc0000757-1491911889:28326..28426Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:28326..28426TCONS_00029599-exon-sc0000757-1510915933:28326..28426Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:28326..28426TCONS_00029599-exon-sc0000757-1575043694:28326..28426Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:29580..29660TCONS_00029599-exon-sc0000757-1491911889:29580..29660Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:29580..29660TCONS_00029599-exon-sc0000757-1510915933:29580..29660Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:29580..29660TCONS_00029599-exon-sc0000757-1575043694:29580..29660Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:30084..30212TCONS_00029599-exon-sc0000757-1491911889:30084..30212Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:30084..30212TCONS_00029599-exon-sc0000757-1510915933:30084..30212Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:30084..30212TCONS_00029599-exon-sc0000757-1575043694:30084..30212Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:31195..31273TCONS_00029599-exon-sc0000757-1491911889:31195..31273Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:31195..31273TCONS_00029599-exon-sc0000757-1510915933:31195..31273Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:31195..31273TCONS_00029599-exon-sc0000757-1575043694:31195..31273Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:31563..31623TCONS_00029599-exon-sc0000757-1491911889:31563..31623Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:31563..31623TCONS_00029599-exon-sc0000757-1510915933:31563..31623Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:31563..31623TCONS_00029599-exon-sc0000757-1575043694:31563..31623Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1491911889:32105..32889TCONS_00029599-exon-sc0000757-1491911889:32105..32889Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1510915933:32105..32889TCONS_00029599-exon-sc0000757-1510915933:32105..32889Clytia hemisphaericaexon
TCONS_00029599-exon-sc0000757-1575043694:32105..32889TCONS_00029599-exon-sc0000757-1575043694:32105..32889Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029599-proteinTCONS_00029599-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000757supercontigsc0000757:21193..32889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.346929	0	0	0	0	0	0	0	0	0	0.702771	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
Blast
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BLAST of TCONS_00029599 vs. Swiss-Prot (Human)
Match: PAXI1 (PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.573e-38
Identity = 82/231 (35.50%), Postives = 127/231 (54.98%), Query Frame = 1 
Query:   43 RKLNPNVKR-VLFTGLTGTTVHRLRQNVVKLKGELARGVNNCTHLVAPKITRTVKFLSAVSICKFLVAPAWVDDSFEAKSFLDESTYTLIDPESEDLFGFKLKRSLQRAQTRQVCKGLHFHVTPAILPAPNAMREIIECAGGKMTEVKTVDELVNVFVHNAQNVSXMTEVKTVDELVNVFVHNAQNDPSYNSYLVSCGDDKNLWADIVKDGYDIYNVELILSGVMKQELEW 732
            +KL P +   VLFTG     V +  + +  L GE+A     CTHL+A K+TRTVKFL+A+S+ K +V P W+++ F  + F+DE  Y L D E+E LF F L+ SL+RA    + K  +F++TP I P+ + M+ I+ECAGGK   V +        + + QN S ++E+                       L+SC +D +L  +    G D++N E +L+GV+ Q L++
Sbjct:  859 KKLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGK---VLSKQPSFRKLMEHKQN-SSLSEI----------------------ILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTLDY 1063
The following BLAST results are available for this feature:
BLAST of TCONS_00029599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAXI12.573e-3835.50PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP... [more]
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