|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029602 ID=TCONS_00029602|Name=TCONS_00029602|organism=Clytia hemisphaerica|type=transcript|length=416bp
CCACCCGCCCAGTGTTCTCCCCGATTAACGTCCCGTTTCTTCAAACCGGG
TTTTTGACTATTTTCGTGATAAATAGCACGGATCCTTAGCTGTGGAAGCA
CGTGGTGAAAACTTGAATTACGTCCTGAATTTCTCATTTCTAAAGGGGAG
AAGAGGACTGGATAAAGAAAGACATGGTGAAGAATTCTTGTTCTGGAAGT
AAAGCTTTACATACCGAGCtGTTATTTGATGGAAAAAATCAATCACTGAC
CATGGTTGAGTTTCAAGCATTGATTACTGGCTCGTTAGAATCTCTTCATG
GACAGGTTGGTGCATCAATGGGTGTTGAGTTgtcaaattataaaaacaat
tcGTGCGACTTAGTAGTGAAGAATCAAAGatgacaaaaatttactggttc
aaAGTTTGAGGATGCT Run BLAST on NCBI transcript from alignment at sc0000757:99529..106282+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029602 ID=TCONS_00029602|Name=TCONS_00029602|organism=Clytia hemisphaerica|type=transcript|length=6754bp|location=Sequence derived from alignment at sc0000757:99529..106282+ (Clytia hemisphaerica)
CCACCCGCCCAGTGTTCTCCCCGATTAACGTCCCGTTTCTTCAAACCGGG
TTTTTGACTATTTTCGTGATAAATAGCACGGATCCTTAGCTGTGGAAGCA
CGTGGTGAAAACTTGAATTACGTCCTGAATTTCTCATTTCTAAAGGGGAG
AAGAGGACTGGATAAAGAAAGACATGGTGAAGAATTCTTGTTCTGGAAGT
AAAGCTTTACATACCGAGCtgtaagtttttttaatttttcacttATTTGG
TTGCCAGTGCACTGCTCTAAAcatcaatgtttagaaaaaggggttacACG
CGCTCCAGAACGCTTAAGNGATGAGTAAGCAAACTCACTCTTatccaaaa
acaaaacctttaactcatcaatgtttagaaaaaggggttacgcgcgctcc
agaacgcttaagtacgttcctccactctgtttgcgttGCAAATACTACTG
AGGTAATCCAGGATAATCATGACGATCGGCGAAAAATTTAGGGCTATTGA
AATTACGTTAttttattggttgaaactcactagcatGTTACATTTTGGTC
GTTTTCGTGATTATGCCGATTTGCTAGTTAACCTCACAAGTATTTAGAGT
GTAGAGTCTTGAGAAGCGAAAAGAACTAGGAAACACTAGGAAAGGTGAAA
ACAACAGCTTTTTAATTGGATATTCTTTTTGCGGGTAATCTGTTAGGCAA
AACTAGAGTGCCTTTTCTGGGTAAATAtatcgggggaaagtgacgaaaat
tataAGAATTAAGGCGACGACATTTTTCCCccagttgaaaaaacttttac
tacctgGTCTTTTATCCCCGGCCAAAAATTTTGCAACAGCCTCAGGATCT
ATAAAGtccaaaatatctgaaaaacacATTGGCCAaagggaatgtaaaaa
gaaattccaaaataccaaaattctaaaaatttgaaaaaatcccgaaaata
aatttaaaagaaatcccttttaccaacctcgttccctcctgcgtattatc
agcttttttatgctttactGATAGCGCCCTTTTACTTCCGCcttgtagtt
tcgaatgtttttattcgaaaatctaattcgaacgttataGATTCGAACGA
AAATATTCGATTTTAGTGACTGCATTTTTTGACTATGACATGACAAAATA
GAGAAGCATTTTTCGATCCCAGAAGTTTTGTTTCGCAGTgagcagatttt
tcagagatgtatttgaaagtttctagattgataattgaaaatgcagatga
tgtacagtattatttcgatagagaagaaacaacccttcatcattggatta
atcaggtTGAAAGCACtgagtctttttctatgtttttgtttcgatatgca
tggaaaagaaaagcagaGGAAAAAGGAGTTCCATGATTGAAACGTATGCG
ATGGTTGTAATGGTTCGATGGTTAAAAaagacaacatttttgaaacagta
aaacaatgtgaataatttcttgattatcgtcagaCGTACCTTTGTCGTTT
GTCGCAAACGAGAGACttgggagagaacttttataaatatCGCTTGTCAT
ATGGTTTTtaaatacaagacattacattCAGTTACATTTCCCTTATTATG
TTATCAGAAATCTCGTATcatattggcaaacattcaagaatatcaaattt
tttgtaTGCAGTGAAGTGATGAAAAACTGTTTGGCATCACACGGACAATA
CAATACCTAAAGCTGGAAATATTTGGATcatgtcaagtagttttataaat
ttcttagttcatcagatttgattttagtgtattttatggaagaactccaa
attaaaagttcaactgaaaatatttttgttgcgttttcccCCTTTCCCTT
GTCTTTGACAATTCCCTACTCCGAAAGTTATCTTTTCGactgtttttgat
ttgatttttctcagATAGGCCTGTCTGTTGTTGTTGAGTActgtatgaag
attttaacttgaatatgaaactctttaccttgaaattttgtcttCACAAT
TAAACCACAGTAATGTCTATAGTTAAaaccaagaaccaacaaacaaacTG
TTTCTTACTCTTATTAAGTTCTTAGTAGGGGGAGGGCTAATTGTtggagg
ggttggaaattttaattctaaaaacccaaaaataagctaAAATCTTGCTt
tatagagcaaaataaggagccTTCCTTCCCTCtgtcagctgaaaatattt
ttacaaattaataaacgatggggggtcctaataaggtccgggggctNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcctaataaggtccgggggttggaa
GATTTTCGTTTTGGAGCAATCtcattatttaaaatataaagcactgagga
tccttcacttgcgatcggagtgatttgaggatttaaaaattgatacgaaa
attgatgtcatgtagtcatacacgaagtctgaattttgaaagtggttgag
cgatatataggaacttagtcgaccgcgcgcacattataccaAAGGAGACG
CGCTGCGCGCGTAATAACTTGGAACTGTTCTGTTGGTCGAAACAtgatgg
gactgttgatatctggcctgtattttcactaatgttaaatttctttgaca
acaaatttgttttgataaatccaccaagtttatcaatcatactttctgtc
ataacatgtcacaataactttcactgatatcTAGTGCGCcctttttagct
tttttgttttcattcaaaaaatgaaCGGACGCCAATTAATTGGAGAATTT
GAGAACACCCGTctgcctatcgcccgatgggattaacaaaaaTAATGAGT
CTTTAACTTGCCGTTTGAGTGACGTCAAACACTCAATTGTTTTGCTACTA
AtcaccagacgatctcaatcgacgATTGAAcaagtcaaaccaaatcgaac
gcaatcaaccgattgaaaatcgattgtcgaacgcaattaaatctcaatcg
aatattaccgcaattttcagatttgattgatattcgatagaccttttttc
aaagaggccaccctgttgaataattatgtagtccagcggaaaaacaatga
aaaaaccatgcataattattacaatatgcatgatacagtaattatgcatg
gctctatcattgtttttatggctggactacataattattcaacaagacgt
tctctttgaaaaaaggtctattgcgttcgattgatgttcgattgcgttcg
attgtgttcgatcgtcgattcattgacccccggattgttcatcgcataat
ttttacaggaaatcgaaagtaatttcattcggcttgtgatgtttgagagc
ttggatgttggaaagctgcaagaataaagccagacgatctcaatcgaacg
gaatcaacgatcaaaccagtcgaacaacaattgaaccaatcgaatattac
ccagaattttgacgttcgatttggtttgactggttcgatcgtcgattccg
ttcgattgagatcgtctggtaatCAGCACTtaatatggtcttcttcgttc
tAGACATTcccgtgtgttccactacagatttttttcatatcgatttaaaa
gcctactcggtgagaaagagaaattgtgtatttttttatatgtcgttcat
taactcaaatcaattgactttggaggttcggtgaaatggtggctgaattg
ccatCTCATGTTTTGtatcagatagtcccaagttagaggtttggcagacg
atatcatccaccaggatgcaagtgaaatttttcaatctgcggacctAGAT
GGGGGCTCGGTTattcatagctgtcaactctcccgcattgaGCGAGAGAC
TCCCGCATGTCAACGATTTCTCCCGCGTGaagaattttctgattttggaa
aaaccaaacggcaaaatttctggattttgaaagatcggaacgaaaaattc
cccaatttcctgaaaaaaatttccaataaaatcggattttacgagaaaat
ttccccgatttcccgattttccgattttgaaaaatcggattatcggggaa
aatctttccgacttggagctctcccgcatttttgtgaGGCGAAGTTTACA
GCTATGGGTTATTATCAGAcatatcagttagggttagggttggagctcga
gagtcacaatataaggccgaaggccttcttaggggcatccgTACCCTGTG
ACCTAACTTAGGATCCCATAGGGATctttgtaggggcaccggtagggtct
agagctttcttaataaaggtctgtaaattacacgctataagtatttgtga
atgacagctttCTGTGGTGTCTCGTTGACGcaagcggttaggcattgggt
ttgtaaaccaaggttgcttgtaGTATTTGGTGGTTTGTGCCGGGGCTGGA
GACCCatttcaccggtacgggcaaattttcagaaaaatacttagaaaaca
gttagaaacactagagaaagtcagaaaatcaggatagaagataggaaaat
agaaaataggggaaaaataagagaggatgcatcctggtggatgatatcgt
ttgccaaccaagttagagcagttgccGGTAGTGtgtatatttatgttttt
tcatCTCAAATTATACTTTAAAGGGGAGAAATTTGCGCGAAgttaaaaag
tcacaaaatttaGTGAAGTTAAGCTTTGCAAATTATAGTTTTAGCCAAAA
TTTCACAGATAGAACTTTTGtgaattcataaaaaatttaccttttttggt
aacaaaaactcataaaacaccgaaaacacgcaaaaatttagcaaacagtg
cgtgagtaggaaagtttattttttgcaaaaaaaactttcgtgtttttagg
tttaatttcttacctggcagaaactttcgcgaagcaggattaaaattgaa
aaaaatgccaAAGTTTCTGCCTGCGCGAGAAAATTTCTGCCCACGAAAGT
AATGGAATGGCAACTCCGTGTCTGTCTGGATCACTGGACGCGTGACGATG
ATTGGAGTAGAAGCTTCGAACTCAAAAGTAGTGCCATGGAGGGGGTTCTA
AAAATTTCTGTTCCATAGGTATTGCCCAGGTCTAAATTGTGATTTGCTct
tagaaaaaagggaaattcaggGAAAGTCTACCTAGAAAATGTCGATATGT
TCTTCATAAGGTAAACATCAATCAAGGGTCACATCGCTCTCAACTCTCTT
TCACATTGAGCGCGCCTGAGCGCGCAGCAGGAGACTTCCCCGTAGTTGTT
TAGGAGAATGTGACGGTCTAAATTGAATAACAAATCACTCCACATACATT
TTCCCTCAGCCAGTACTCAAACATTCTCCAAAACAACCATTCTAACTAGT
TTTCCcacataaaaaaatttcccccaAATTTCCTGCATTTCCAGGATTTT
CTCATGGAAAATCGGGAGGAAAATTTCCTTTATAAAAATTTCAGATAAAT
ACTGTAAGACTTCACAGAAAATTTTTcctgatttcccgatttttccgatt
ttgaaatATTGGATAATCATggaacattttttaactttgagcCCTCTTGC
ACTTTTGTGAGGCAAAGTTGACAACTATTGGGTCATGTTCAGGTCATATT
CCAGCCAAAAATAGCAAATAGTGTGTAAGAAAATCCTAGAAAATGTAAAA
CAATGCTGGGTGAGGTTTTTTTACGTCATTAGCATTTCCTGAAACAagac
tatttttctttttggcctAACATCTATTATTAATTACTCAGGTTATGGAA
ATCCTTTTTTATTTAGGTTATTTGATGGAAAAAATCAATCACTGACCATG
GTTGAGTTTCAAGCATTGATTACTGGCTCGTTAGAATCTCTTCATGGACA
GGTATTGCAGTTATTTTCCAATTCAGGAATACATTACAGAGTGCCTAGAA
AAGTGCAACATAGTTTTTATAAAGTAAAATGCCAAAACTGTTTAATATAA
ACTGAAATTGAAATAAACCTTTTGCTAGACTCTATGTCATGTTGGatgat
taaaaactccagcacaTAACAATGGTGAGAAAAAAATTAGTGTTTACTTA
TGATAATTATTCATTAATGTGTCATCCTTCTTGTGCTGGAGTTTTTTATT
ATCTTACATGACATCGCTTCTAGTAAAAGGTCTATTGTTAGAATTTGTAG
GAAGTTTGTATATATACTGATGTAGTTTTGATCAGTCAGGGTCAGCTTTT
CTAGAAATAATTTAGGAAAATTCCTTCACAATAGTAATGTTCCAAACTGA
TTAAAAAATGGTAATTATAATAGCATGATTCTGTAGTtgtttttcactta
aaaaaggCTGAGAGgtataataattaattttagttATTCCCACGTTGATG
TATAactatttttttgatttacttttttacatatttttatgCAGTGTTTT
GTACTTCGTTTTCATTCAGGTTGGTGCATCAATGGGTGTTGAGTTgtcaa
attataaaaacaattcGTGCGACTTAGTAGTGAAGAATCAAAGGTATTAT
gaattaccgtattacttcgaataaacgtccAAGAATTTTAGGAGGctcgt
ttaaaagaagggggcgtttattaaataatcttAAAGCTAGGGACGGAAAA
ATCGAGTGATCTCATAATGATACAAGTGCTTTCTGTTGGGGTCATATAGT
AGCCAATAATCTATATTCATAAGACCTTTTAGTTTGAAGCCAAATATCTG
TCTTATTACCGTTATAGatgacaaaaatttactggttcaaAGTTTGAGGA
TGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029602-exon-sc0000757-1491911889:99529..99748 | TCONS_00029602-exon-sc0000757-1491911889:99529..99748 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1510915933:99529..99748 | TCONS_00029602-exon-sc0000757-1510915933:99529..99748 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1575043694:99529..99748 | TCONS_00029602-exon-sc0000757-1575043694:99529..99748 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1491911889:105295..105379 | TCONS_00029602-exon-sc0000757-1491911889:105295..105379 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1510915933:105295..105379 | TCONS_00029602-exon-sc0000757-1510915933:105295..105379 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1575043694:105295..105379 | TCONS_00029602-exon-sc0000757-1575043694:105295..105379 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1491911889:105948..106021 | TCONS_00029602-exon-sc0000757-1491911889:105948..106021 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1510915933:105948..106021 | TCONS_00029602-exon-sc0000757-1510915933:105948..106021 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1575043694:105948..106021 | TCONS_00029602-exon-sc0000757-1575043694:105948..106021 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1491911889:106246..106282 | TCONS_00029602-exon-sc0000757-1491911889:106246..106282 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1510915933:106246..106282 | TCONS_00029602-exon-sc0000757-1510915933:106246..106282 | Clytia hemisphaerica | exon |
| TCONS_00029602-exon-sc0000757-1575043694:106246..106282 | TCONS_00029602-exon-sc0000757-1575043694:106246..106282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000757 | supercontig | sc0000757:99529..106282 + |
Blast
The following BLAST results are available for this feature:
|
