TCONS_00029604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029604
Unique NameTCONS_00029604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029604 ID=TCONS_00029604|Name=TCONS_00029604|organism=Clytia hemisphaerica|type=transcript|length=1480bp
CAGAAACTGAACCTACCCACCAACCATCTGACCTTTTTCTGCAGCCATAA
GAACCAAAAGAAGTCAAAAggaataatttgaaattaaaacagAAAAACTT
CACTGAATGGATTGGAGAATAAAGAATAATGGTTGCTATAGAATTTGAAG
ATGTGTTCGGACCTTGTGTGGTCACTGCCCTTAGTGCCTATCAAATGGGT
GTGTTTCAACGGAAGGTTGGAAAAGCCAGGAAAAAGTTTAAGGTAGCACC
ACCGACAACCCTAGGAGAAAATGTTGATGAAGGCTTTATTCGTGTTTTCA
GAGCTCAtcaaaattgTGTGGAGACGTATACAGTGTTCCTGGGTAGTCTA
TGGAGCTGTTCACTTTTATGGCATCAAGttCCAGCGTCCTTAGTTGGTAT
AGTGTATATGTTCGGACGAGCGAAATATTTTCGTGATTATTCGATAGCAG
CTGATAGAAGGATGTCAGGCTTTAAACTTTCAATTGGTAGCATCGCAATG
CTTGGTATTGGTAGCATGGTCGGATGTGGGCTCAAGTTATTTCGTTATTt
caagaaatgaaagaaacactGTGtgttataagtgagtgagctggTTTAGA
TCGACTCGCTTTACGTTAATAGAAGGTTGTGTTGTTATTGATGAAGATGG
TTCCATTACCAAAGAGCTTTGGTGGACAAAATGACATTCATTGATCGAAT
CACTctcttccaaaaaaatgtatttatatTACATTTTCACAGCTGCAATC
TTACCTTTAGTTTTTAGAATAGCTATTTGCGTTCTTTCTACAACAAAGAC
TTTTTGAGGCATAATTTGGTCAACTTGAAACTGGTAAATACAGTCAACGA
TCACCCGATTTTATACTGTTTACAGTCNTTTGGTCAACTTGAAACTGGTG
AATACAGTCAACGATCACCCGATTTTATACTGTTTACAGTCACGGGAAAG
AAGTGAATATTTGACAACAAGGCTGTGTCCCCGACTTGATACAGTTGAGT
CTTTAGAACTTGAGCGCCAAAAGGAAGTGAGAATAAAGGGTGCAGTCAGC
TTTTTAGAAGACtagtaatgatttttttcttttttccctcaAAAACCGAG
CGCGCCGCAAGGATTAATCTGATGTATAGAGATACCTCATTGTCTTTCAC
AATTTGCCTCTACCGGTAAGCGGTAATCCCATTTCGTACAAATATTCTAG
TTTGTGGGCCTCTTCTAAACTCTCAAAACGTACCGGTCGTTTACCATAAA
GGACATCATGGATCTCAAGGGTCTGCCCCTACTACTAAAATGTTTATAAA
TTTATACCGAATTATTTCATCCAGAAATCGatgttttagaatttttatag
aagtttttttatgaaaataagtTTTAGATATTGTTAGGATTTTATATAGA
TGATAAAGTAAAGCGAATTAATTTTACTTGTAAAGTTTATTTACAATTTG
AATGTATTAATAATTTTAATCGACTCCAGG
Run BLAST on NCBI

protein sequence of TCONS_00029604-protein

>TCONS_00029604-protein ID=TCONS_00029604-protein|Name=TCONS_00029604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MVAIEFEDVFGPCVVTALSAYQMGVFQRKVGKARKKFKVAPPTTLGENVD
EGFIRVFRAHQNCVETYTVFLGSLWSCSLLWHQVPASLVGIVYMFGRAKY
FRDYSIAADRRMSGFKLSIGSIAMLGIGSMVGCGLKLFRYFKK
Run BLAST on NCBI

transcript from alignment at sc0000757:111747..123662+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029604 ID=TCONS_00029604|Name=TCONS_00029604|organism=Clytia hemisphaerica|type=transcript|length=11916bp|location=Sequence derived from alignment at sc0000757:111747..123662+ (Clytia hemisphaerica)
CAGAAACTGAACCTACCCACCAACCATCTGACCTTTTTCTGCAGCCATAA
GAACCAAAAGAAGTCAAAAggaataatttgaaattaaaacagGTAGCTAC
AGTTTACTCTTTtttatttatagaagtgtatttctcaggtctattttcat
agaggtcaaattgacctctatgaaacaatcttacatctttacaatttata
gatcttatcattccattcgtttgtcaattctgTCATAGAGTTTTACAGTT
AGGCACCTCTAACCCACTCTTCTTACAATCATGTTGTTTCcgtcgtaaat
ttctttaaatacagttagggaaaccatccaggatcctgccattctatcag
ccagcaaaaactgaatgacacttgtaaacttaagtttcttataccatttt
ccatcgaaaacactACTGATTCCCAAAGCCAGAGACCAAAGCAAATGATC
TTTCTTGAtgagggcgcccttttggatctattgttaactcatttaaaatg
gtggacagagttgcggAATGACGAAGGCGCCCANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtgagggcgcccttttggatctattg
ttaactcatttaaaatggtggaaagagttgcgaaATGACGAAGGCGCCCa
ctgcttcgagggtggtaacgccaaaacgccaaATATGAccagccaacaga
aggcgagtttgttgccgcgcgagttacgtcatgcactccaccgtagcGAA
AGCGCGATgacatttcacaattataagaatatcttatgtgcttaattcta
tttaactttgagagcttcatggaagatgaagaagtagaaagatgaaaaat
gcgctggttaattttttttaaataggtgtgttctatcattgttgaaagtt
gaagaaatttctaccgacgcataatttttttacagccaattttaaggcac
agtctgcttatacttactatgtttacTATATCATCTaggcaaaaaacggt
aaaaaaagacacaaacacaatttttttatgagcgtggttatgattttttt
gatagcggccgcgtacaggaactcgccaaatgttcctaactgaaatagag
tttagtcctaggactacctctcactttccatatgACTCTTGTCTTCTTCT
TtctatgttttttcttttgctttatgaCTTTATGATGCCATTGTTTTATT
ATCTCACgttctttccttgaaaaatcgtctgaTACTCTAAAATCATCGTC
TTTATCTAGTTTGTGGGCTGATGCAAGTATTATAATCCTTTCTTCTTCAC
TCTGGAGAGTAACTTTTAATGGTCTCCATCGTTCATTAGTATACATTTCA
TCTTTACGAGCACCTATGCGTTCTACCTTGATTATCGTCACATCGAAACC
CATTTGTTGTTTCACTGTTCTTTCTATAAAGTTTTTGTCACCAACTCGTT
GCTCTTCTTCGTTTTCGTGCTTGTTTTCACCTAAATCATGCACCATGATG
TTGCACTTGGTTGATTTGAGCCAACGCTCCTCTTCGTTCACTGATTTGAT
AAAACTTTTTATGGTCACCTCTTGTTTTTGTAGATCTTCTTTGGTGACTT
CTGcatatgattgtttttttgtttctgtgtTGTTGAGCTTTGTTTCAGAT
CGTTTGTTGTTCCGTTCTTTGTTGACgtcttttttattcattagcTTCTC
GACATTCCTTTCTAGAGAGGTTATTCTCTCGTTGAAACCTAATTTCAATC
CATGATGTTCATCTTCATCTGCTTCCTTCGTTGTAATGTTACTGCGAGCT
TTTTGTCTGCTTGTTTTTATCCTCTCAAGTAAGAGTGGCGTTATTGTAAC
ACAATTTCCACATTCAAAGCGCCGGCTTTTATATTGCAGACAAAGCTGAA
TCTGATAGGCCGGGAGCTCAGAGCAAGCATAATGGACAAGTCTATCACAT
CTCCTACATTGTAAGGTGTCGTTACCTGCTATGATGGTGTTTGTTAAACA
GTTATTGGGTGTGCAATATCcataattttgttgaatttccttgttagaat
tttcgTTGATTTTCCGCCATATTGTTGCATTTTTCTTTATGCCTGTATTG
TGAGCAACCAAAGCCAGTCAGTGGAAGTACTTCGATTTGATGCGAAgcgt
ctttttttcttttttacgtcgaacagaacaaaagaaaatagcaaaagaac
aaaggaattacccataaTAGCTTGTACCATTTTGCAACCATGGAGAATTG
TGAGAATTGTGTTgtcggcaatcaacagaatcttatgTCTTATGCTGCCA
TCttaatttgccaaactaaatgtgCGCGCGCATGTGTTGACCTTAAAGCG
GCCCATATTTTCAGCCCCCAGGGCacaccgtgagtggtcctaaatccgac
agccctgcctaaatccgacctcccaaataactgctataaaaaaaaattct
atgtttacaaacattccctctccaagttgaacaataaactaccgtgagtg
gtcctaaatccaacaatcctgcctaaatccgacagccctgcctaaatccg
atggggtctttcataCATATacagatacaaactaaaataaaaacaaacct
ttcgctgtgacacaatgaagataccaaagtgtcaactaaactgagagatt
tgattatttctacaactcacacttttttgatcacattaattgacatcttg
atattaaagtcatcttgttagatgttttgtttagagatttcttgcaatag
tttattgtttaacttggagagggaatgtttgtaaacatagaatttttttt
cgtagctagcagttatttgggggtcggatttaggcagggctgtcggattt
aggaccactcacgatATATTGCGaaaactctcgaaacaaaacatctaaca
atcTGTAATGTCAAAGATGTCAATTATATAATGcgataaaaaaagtgtga
gttgtaaaaataatttattacctctattattctgaatccatTGCTCTTGT
TTAAAacattaacaattttgtaataaaaaattatgttttgtataagaagc
aattaatgttttggttcaattggttcagtttatcaaatctctcagtttag
ttgacactttggtatctttattgcgtcacagcgaaaggtttgtttttatt
ttagattgTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgcgtc
acagcgaaaggtttgtttttattttagtttgtatctttgaaagaccccat
cggatttaggcagggctgttggatttaggaccactcacagtattggccct
accgcgttgctgaattttgacatgaaaatttcaataagggtacatgaaaa
tttcaataagggtacatgaaaaaacttaAACGTAAAAAACCTGACGTTTT
TACTGTCTCCGAATCaggttttcttgtaaataaacagtCGGTCGGACGAC
CCAAACGCAACATATTTTGGGTTTGAACaaaacctggcccacctctctgg
cccgggccatatggcGTACCCTTGGCCTACCTTATGGCCCACTTTAcaac
tctaaaaaagatttgattcttatcattctgaaaatctgcaaaccaATTCT
GAGATTGGACTTTGGTTTTTCTGGCATTTAGAAAAACAACGAGActgaaa
taagcaaaaaaaaaataaaaaagttttcagtcTGCATTTTATACACCTGA
CATAGATTAAGGGAAGAGGGTCTGGTAAAGTCCTGTACGGGTGCCGACAA
CCCCCGTAGCGCCgtttcttcaacttttcaggATTTCAGACCCCTTCAGt
gagtcacactagcgtcccgccaaaatgcgtatcaaagattaatgctgcga
aagcgctatatcgtttacttgactctcaagcaaaaaaatgcgccgcNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtagatgaaaaaatttgagccaagccaaccttgaaa
actaatttgaagatcaacttcccaagaaaaagatctacgggggaggcgga
acccacctagatccacgCACAGCCgaataggctatctcccggaaattttg
ccggacctcaaacaatgacccatttacatgtgcggaattgtttttacttt
agcgtataaacaaggccgaAGCgttgtctcgggaattgaatgacaaattt
tggttggttgattttagctgctgcacgttttattttgtttccaactttca
agttttaattaatattgtcttgtgAACTTGAAAGCTTAATTttctagtgt
gactaactgcccttcgcccaaaaaaacattaaatatcaaaacctggcaAA
AAACTTTGAAGTTGACCCGAACCCGACTCGAACTCTGGATCCCTAGTGCA
AGAGAACAATGCGCTACCATTAGGCTGACTTCTGGTGATATAGTTAAAAA
TTTTAAGGGTCTTATGGCTTGGTCAGACAGGGCCTACGTTAAGAATAtct
caccctcaattttggcactttcttacgaatacttgaccctcatctaaagt
acactattctttaaaaaaaagcgtttaatTCTTAGAGCATTTAGAAGATT
TGACCAATTGTTTGTCGTAAAACGGCTGATGCAATAACGCCCGTATCATA
ATAACCTGGTTGTCCGAGAATgaaatcggggaaaaaaatctttgaaggtG
GACCAAAGGGTAGGCCAAAGGTAGACCATATGGCCTGGGCCAGAGAAGTG
GGCCAGGTTTTGTTGTAACCCACATATATTTTATTGCTgccaaatgaaaa
atgaagaaactttcgtttttaattgtctttttaatctaccatgaagtgtt
ataaaattccttattgaATGACACGTTCTTCTATATTGagaggtttaaaa
aatgacgtagaaaTAAGAAACTGTGAAAATCTATTACAAAACCTACGTCA
CAACCACcttttagttttaatgacttgttctcacttgtttggtttccgta
ataaaaaccagacggtgtcaatcgaacaacttcaaacaaaaatcgcaatc
gaaccaatcgaaagtaatcaaacgcgatcgaataattgcgattagatttt
cgaacgtaattgaatctcaatcgaacggctgattcctgggtaatattcga
ttgtgttcaattgcgttcgagtaaggttagattggttcgattaatagttg
actatgttccattggtttgattgattgtcaattacatatctttttaacat
taataaaacaaaaaaggcaAGACAAATATTAATATTGTAAACAAGACGAA
ATAAAATCAAATATGCCATACACAGATGACCTCTCGTGTGTTTTTAATCC
ATTCTTTGGATTCCTACGATTCTTATGAGGTTAAAAGAGATAAAAGCAAT
CTTATCTACATAATATGATATAAATCGGTTGTGTAAGGTATTAGAGAATA
CTAGAGGGTCGTTTGCCCCGTCCAGGAATCAATTAGAAATGTTCAAAGAA
AACACAAACTctgttttttcagttttcaacctGCATAGGATTTCAGCCAT
TTACGAAAATATCCCCTCAAATGATGTTAACGGGGTATTTTAGGTAGGCC
TAGTAGCAATGTTGATCAGGCATCACCACAGTTTTTTTTACAGTCATAAA
AATAAATgtgtttttttgaataatttaaatGCGCATAGAAGTTTAAAAAC
ATTAACTAAAACATAAGACCTGCTGAGAATACCAAAAACTAGCTAGGGAA
GTACTATCCACTGGACAAATTTACCACACCTTTGACTCTTTCTGCCACTA
ACGTTGCAGATAAAACAttcaaagataaagaaaaaacacttgAAATAGAC
TGCCACCACCCATTAGGTCCCCCGTATCCCCGCGGCCGCTCACAGTAAAA
GCTGGTGAACGACTGAATTTAAACTGAGTTGAAGccttgaaaattcaaat
ttttaccaaCTCTAGTCATTTGAGTAGAAATTTGCTACTAAGCATGAAGC
ATGCTAAATAACTAATTAAAAAAGTGTTCAAATTTCTAGAAAAACTTCAC
TGAATGGATTGGAGAATAAAGAATAATGGTTGCTATAGAATTTGAAGATG
TGTTCGGACCTTGTGTGGTCACTGCCCTTAGTGCCTATCAAATGGGTAAG
CAATGTAATATTTCAGTTGGGAGATATAATTTTTTACTGGATGAAATCAA
ACACAATCTTATAAGGATGATTTCATAGatgactgaaaatttattttata
tttttgttattttgacaGTTGATAAGTTCATGGTTTTGTTTTCTAAGCTC
ttttaaaacattaaattttatatgattatgatgtatgatatttttgtttt
aaattataTACAGGAAATCAAAACCtgacaaaattgaaattgagACTTGC
TAAATTTTCCCCAGTCAGAAATAACTCTGGGTCgtgctttttaatttttg
tcttgTTATGTATTTAATTCTAATTTCTTAAAATCATGTTTTAGGTGTGT
TTCAACGGAAGGTTGGAAAAGCCAGGAAAAAGTTTAAGGtataatatgaa
aaaaaaatctattttgaagccCAGTCTTTCCTTTAATATCTTAAAAGAGT
TCTACCTTTAAAAGAGATTGAAAAAACTTCTCAAATTTAGGTCTGTTTGA
ATCTGTCATAATGATTATCACATATATGATAATACTCGAAGAATATGAAA
CACATTCGGTTGATTTTGATTGAGGTAGCTAATTACTATGCTATCAAGTA
TGAAAAAGTCTTAATAGGTACTGAACTAAAATAACGAGTTGACGAATTTA
AATTTCTTGATATACGACATACACAGGGCTCAAAAATTTTTACTTACTTA
TCGAAAATGATCCATTAAATGGTCCGTTAAAAAGCAAACTTTTCTAACTA
CATTATTTTTGTCATCCAGGTAGCACCACCGACAACCCTAGGAGAAAATG
TTGATGAAGGCTTTATTCGTGTTTTCAGAGCTCAGTAAGCCTTTCTTAAT
CACCCATTCTTCATccattttgtttataaataaaaataccaaattatCAG
TGATCATAATATAGTTGATAGTTAGTTTATTTATATTTCAAGATATATTT
TATGCAACCAATGCACACTCATTGTGTTAACTCTGTGTTAATCTATAATC
TTCAAGCTAAAAAGATGGGGTACATAAAGGGCTACAGTGTGGTTCTCTTC
TTAGATAAGGTTTCtcttaaaaatctcaaaacttattCGCAAAACCTGTG
AACTTGGATGAGAATATTAATTTttgttaatgttttttttttcagtcaaa
attgTGTGGAGACGTATACAGTGTTCCTGGGTAGTCTATGGAGCTGTTCA
CTTTTATGGCATCAAGGTAATATCTAACTTGAATGAAGTTAAAGCACTCT
CTCCAACCTCGACTTCTTAGTTTTTGGGATCACATGACCTTTAATTTGTT
CTGTAATTTATGACACAAATCATACGTTCAtacgtttttggacctacccc
agtgggtggaggtcctttaattaaCCAATGTTcatccgttcgtctgttac
cagcgtttctcgggattggctcattagttttttttgatcttttgcacagt
gatacaaaatggtgattcccaaaaagtgacggagccatGGCGTTCAAAAT
CTACTctaaatttagaacgccatggacggagctcgattttcgaaaaaaaa
aaattcggcgaatttggccaaaaagtgcctataaatggtttttttttgga
cttttgaacTTTATGCGGCTTTTTGTGAAATTgcttgatttgtttttttc
tgtttttttgcataaagatggagggcaaggttctctaaaaagtggctcaa
gcagttttttttcagaaaaaaaattttggtcgtAAAAATCGGactttctt
atttggggaaattcccttatgtcatttatagggaaaaagagcatttctcg
cgattggattgatatttttttctctttttttgcactttgatgtaaaatgg
taatatttaaaatctgatgaagcccgattttcaaaaaatagtgcctaaca
tgggtttttttggactttggggAAATCACCATTTATCGTCAATAGAGAAA
TTacgctaaaatatttattcactcCGATATCTACGACTATACGACTTTAA
CTATATACTTCACTTGTCGATATTTATTTGAGCTATAatactcacggtaa
tctattcaagctgcttACTACACTTTCTTACTATACTGTCTTGCtctttg
tcctatttttatctgattctcatcatcaggtaggtccattcagcatgttt
tcattgaaattgatgactgaaaatgataatatttttgggttgCATAATAT
ATTCGTCACTTTCGGGTTGATTgatgtactttaatgggatgaactttcgc
ggggattaaattttgcggatttcgcggatttgggtgtcatccgcgaaaat
ccgcgaaattaagtcccaatggataTTTGGAAGCGCCTCATCCTCattac
tcaaaatatgtcaaataaatactatttgaatggttacttgcatcaaagag
gcgctaatgatgtgtatttcaacaaccgatatgcatgatttgacagtaaa
aggtacaaaatcgtgaaaatattgtcaaccaaaagtgccacccgcgaaat
taagtccccgcgaaaattttgaatttcgcggataggccctaccgcgaaat
ttaatccccgcgaaagtttatcccattaaagtaattcAATTGAAAACAAG
GCTCGCATTGATGACCTCGTCGATGTTTATTACATgggtttttattgttt
ttttagttCCAGCGTCCTTAGTTGGTATAGTGTATATGTTCGGACGAGCG
AAATATTTTCGTGATTATTCGATAGCAGCTGATAGAAGGTATGTAGAGGA
ATTTTATAAATTGTAATTatgaaagattgtttcatagagttcaatagacc
tgagaaatatattTCTATAATTAAATAAATATTACATAGAACGTACCCCC
CCCCCgagcctagggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaaccatttttgcttgattgggg
ctgtatttttcaaaaaatactgggggctaGAGCTTGCTAGGGAGGGGGGT
GAGTGCTGTGTAATAGAACTTAGGGCAGAGCTGATAAGTTGAAGATCTAT
GCTGTGGGAAGGTTTTATCCctcttgaaaataatttttgcctgCCGCGCA
ATATATTTATCGAGAATTTGCATGcaaaatttatttgatattttgctttg
tgaaggtgggggctatgtttctagaatCGTCGGATAGGTTTAATTAGATA
TCGGATGGCGAATATCCCTTTTTGTTTGTGAGCATAAAAGAAGTTTTCTT
ATTAATAAAAATATATCCATTTCGCCTGAATGTCAAGCAAATATTCGTCG
AGAAAAATCGGATAAATTATATTCAGTCCAGCTTCATATCATCAGGCGAG
ACTGAATATTTTCGATATCCGATTATTTAGCGTTGAATATATGTTTATTG
TTCACTCTATAGCAGAATCTTTTTCCGCTTTCATTTTTTAGTCTCtttcc
atttaaaaaaaacttagatgtAATATTCGAACGTTTCACTTTCTCAACTG
AACATGTCGATTTCATTGTTTTCTCTTTAATTGCCAGAACATTCGAATTC
ATTTCTCTTTcatattttctccttttttgttcatttaaaaagagaattat
tttattttgattatttcaatggcttttatttttttattgaatagaaaacT
TCTTTTATGCTCACAAAAAGGGATATTCGCTATCCAATATCTAAAAACAT
CTGACAGTGTCTTTTGCTTAGATGTGGAcgataataagcagatattcgac
aagaaaattggatatcgaaaattattcagtcgaATATCATTAAAGCGAGA
CTGAAtaatttcgatatccgatttaTATAATATGGTATCGTTCACCAATT
AGCAGAATTTTCTTTATGCTTGCTACTACAGAAGAGATATTTTGCTATCG
GATATCTATCTAAATCTGCTTGATATTGGTCTTCTAGCCCACCTTCTgca
tattgaaaaaaaaaataactccAATTGAATTGACTTAGCTAAATCAGAAC
TACCCAACTATTTGATCTGGTTAATCACCTTATCAACGAAATCAGTGACA
GTAAAACCGTCAGGTTTTCAAGACACTTGTATTTCTGCGTTTTTAGGATG
TCAGGCTTTAAACTTTCAATTGGTAGCATCGCAATGCTTGGTATTGGTAG
CATGGTCGGATGTGGGCTCAAGTTATTTCGTTATTtcaagaaatgaaaga
aacactGTGtgttataagtgagtgagctggTTTAGATCGACTCGCTTTAC
GTTAATAGAAGGTTGTGTTGTTATTGATGAAGATGGTTCCATTACCAAAG
AGCTTTGGTGGACAAAATGACATTCATTGATCGAATCACTctcttccaaa
aaaatgtatttatatTACATTTTCACAGCTGCAATCTTACCTTTAGTTTT
TAGAATAGCTATTTGCGTTCTTTCTACAACAAAGACTTTTTGAGGCATAA
TTTGGTCAACTTGAAACTGGTAAATACAGTCAACGATCACCCGATTTTAT
ACTGTTTACAGTCNTTTGGTCAACTTGAAACTGGTGAATACAGTCAACGA
TCACCCGATTTTATACTGTTTACAGTCACGGGAAAGAAGTGAATATTTGA
CAACAAGGCTGTGTCCCCGACTTGATACAGTTGAGTCTTTAGAACTTGAG
CGCCAAAAGGAAGTGAGAATAAAGGGTGCAGTCAGCTTTTTAGAAGACta
gtaatgatttttttcttttttccctcaAAAACCGAGCGCGCCGCAAGGAT
TAATCTGATGTATAGAGATACCTCATTGTCTTTCACAATTTGCCTCTACC
GGTAAGCGGTAATCCCATTTCGTACAAATATTCTAGTTTGTGGGCCTCTT
CTAAACTCTCAAAACGTACCGGTCGTTTACCATAAAGGACATCATGGATC
TCAAGGGTCTGCCCCTACTACTAAAATGTTTATAAATTTATACCGAATTA
TTTCATCCAGAAATCGatgttttagaatttttatagaagtttttttatga
aaataagtTTTAGATATTGTTAGGATTTTATATAGATGATAAAGTAAAGC
GAATTAATTTTACTTGTAAAGTTTATTTACAATTTGAATGTATTAATAAT
TTTAATCGACTCCAGG

Coding sequence (CDS) from alignment at sc0000757:111747..123662+

>TCONS_00029604 ID=TCONS_00029604|Name=TCONS_00029604|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0000757:111747..123662+ (Clytia hemisphaerica)
ATGGTTGCTATAGAATTTGAAGATGTGTTCGGACCTTGTGTGGTCACTGC
CCTTAGTGCCTATCAAATGGGTGTGTTTCAACGGAAGGTTGGAAAAGCCA
GGAAAAAGTTTAAGGTAGCACCACCGACAACCCTAGGAGAAAATGTTGAT
GAAGGCTTTATTCGTGTTTTCAGAGCTCAtcaaaattgTGTGGAGACGTA
TACAGTGTTCCTGGGTAGTCTATGGAGCTGTTCACTTTTATGGCATCAAG
ttCCAGCGTCCTTAGTTGGTATAGTGTATATGTTCGGACGAGCGAAATAT
TTTCGTGATTATTCGATAGCAGCTGATAGAAGGATGTCAGGCTTTAAACT
TTCAATTGGTAGCATCGCAATGCTTGGTATTGGTAGCATGGTCGGATGTG
GGCTCAAGTTATTTCGTTATTtcaagaaatgaATGGTTGCTATAGAATTT
GAAGATGTGTTCGGACCTTGTGTGGTCACTGCCCTTAGTGCCTATCAAAT
GGGTGTGTTTCAACGGAAGGTTGGAAAAGCCAGGAAAAAGTTTAAGGTAG
CACCACCGACAACCCTAGGAGAAAATGTTGATGAAGGCTTTATTCGTGTT
TTCAGAGCTCAtcaaaattgTGTGGAGACGTATACAGTGTTCCTGGGTAG
TCTATGGAGCTGTTCACTTTTATGGCATCAAGttCCAGCGTCCTTAGTTG
GTATAGTGTATATGTTCGGACGAGCGAAATATTTTCGTGATTATTCGATA
GCAGCTGATAGAAGGATGTCAGGCTTTAAACTTTCAATTGGTAGCATCGC
AATGCTTGGTATTGGTAGCATGGTCGGATGTGGGCTCAAGTTATTTCGTT
ATTtcaagaaatgaATGGTTGCTATAGAATTTGAAGATGTGTTCGGACCT
TGTGTGGTCACTGCCCTTAGTGCCTATCAAATGGGTGTGTTTCAACGGAA
GGTTGGAAAAGCCAGGAAAAAGTTTAAGGTAGCACCACCGACAACCCTAG
GAGAAAATGTTGATGAAGGCTTTATTCGTGTTTTCAGAGCTCAtcaaaat
tgTGTGGAGACGTATACAGTGTTCCTGGGTAGTCTATGGAGCTGTTCACT
TTTATGGCATCAAGttCCAGCGTCCTTAGTTGGTATAGTGTATATGTTCG
GACGAGCGAAATATTTTCGTGATTATTCGATAGCAGCTGATAGAAGGATG
TCAGGCTTTAAACTTTCAATTGGTAGCATCGCAATGCTTGGTATTGGTAG
CATGGTCGGATGTGGGCTCAAGTTATTTCGTTATTtcaagaaatgaATGG
TTGCTATAGAATTTGAAGATGTGTTCGGACCTTGTGTGGTCACTGCCCTT
AGTGCCTATCAAATGGGTGTGTTTCAACGGAAGGTTGGAAAAGCCAGGAA
AAAGTTTAAGGTAGCACCACCGACAACCCTAGGAGAAAATGTTGATGAAG
GCTTTATTCGTGTTTTCAGAGCTCAtcaaaattgTGTGGAGACGTATACA
GTGTTCCTGGGTAGTCTATGGAGCTGTTCACTTTTATGGCATCAAGttCC
AGCGTCCTTAGTTGGTATAGTGTATATGTTCGGACGAGCGAAATATTTTC
GTGATTATTCGATAGCAGCTGATAGAAGGATGTCAGGCTTTAAACTTTCA
ATTGGTAGCATCGCAATGCTTGGTATTGGTAGCATGGTCGGATGTGGGCT
CAAGTTATTTCGTTATTtcaagaaatgaATGGTTGCTATAGAATTTGAAG
ATGTGTTCGGACCTTGTGTGGTCACTGCCCTTAGTGCCTATCAAATGGGT
GTGTTTCAACGGAAGGTTGGAAAAGCCAGGAAAAAGTTTAAGGTAGCACC
ACCGACAACCCTAGGAGAAAATGTTGATGAAGGCTTTATTCGTGTTTTCA
GAGCTCAtcaaaattgTGTGGAGACGTATACAGTGTTCCTGGGTAGTCTA
TGGAGCTGTTCACTTTTATGGCATCAAGttCCAGCGTCCTTAGTTGGTAT
AGTGTATATGTTCGGACGAGCGAAATATTTTCGTGATTATTCGATAGCAG
CTGATAGAAGGATGTCAGGCTTTAAACTTTCAATTGGTAGCATCGCAATG
CTTGGTATTGGTAGCATGGTCGGATGTGGGCTCAAGTTATTTCGTTATTt
caagaaatgaATGGTTGCTATAGAATTTGAAGATGTGTTCGGACCTTGTG
TGGTCACTGCCCTTAGTGCCTATCAAATGGGTGTGTTTCAACGGAAGGTT
GGAAAAGCCAGGAAAAAGTTTAAGGTAGCACCACCGACAACCCTAGGAGA
AAATGTTGATGAAGGCTTTATTCGTGTTTTCAGAGCTCAtcaaaattgTG
TGGAGACGTATACAGTGTTCCTGGGTAGTCTATGGAGCTGTTCACTTTTA
TGGCATCAAGttCCAGCGTCCTTAGTTGGTATAGTGTATATGTTCGGACG
AGCGAAATATTTTCGTGATTATTCGATAGCAGCTGATAGAAGGATGTCAG
GCTTTAAACTTTCAATTGGTAGCATCGCAATGCTTGGTATTGGTAGCATG
GTCGGATGTGGGCTCAAGTTATTTCGTTATTtcaagaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016909XLOC_016909Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029604-proteinTCONS_00029604-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029604-exon-sc0000757-1491911889:111747..111838TCONS_00029604-exon-sc0000757-1491911889:111747..111838Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1510915933:111747..111838TCONS_00029604-exon-sc0000757-1510915933:111747..111838Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1575043694:111747..111838TCONS_00029604-exon-sc0000757-1575043694:111747..111838Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1491911889:118186..118291TCONS_00029604-exon-sc0000757-1491911889:118186..118291Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1510915933:118186..118291TCONS_00029604-exon-sc0000757-1510915933:118186..118291Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1575043694:118186..118291TCONS_00029604-exon-sc0000757-1575043694:118186..118291Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1491911889:118641..118684TCONS_00029604-exon-sc0000757-1491911889:118641..118684Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1510915933:118641..118684TCONS_00029604-exon-sc0000757-1510915933:118641..118684Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1575043694:118641..118684TCONS_00029604-exon-sc0000757-1575043694:118641..118684Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1491911889:119066..119130TCONS_00029604-exon-sc0000757-1491911889:119066..119130Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1510915933:119066..119130TCONS_00029604-exon-sc0000757-1510915933:119066..119130Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1575043694:119066..119130TCONS_00029604-exon-sc0000757-1575043694:119066..119130Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1491911889:119442..119512TCONS_00029604-exon-sc0000757-1491911889:119442..119512Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1510915933:119442..119512TCONS_00029604-exon-sc0000757-1510915933:119442..119512Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1575043694:119442..119512TCONS_00029604-exon-sc0000757-1575043694:119442..119512Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1491911889:120953..121034TCONS_00029604-exon-sc0000757-1491911889:120953..121034Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1510915933:120953..121034TCONS_00029604-exon-sc0000757-1510915933:120953..121034Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1575043694:120953..121034TCONS_00029604-exon-sc0000757-1575043694:120953..121034Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1491911889:122643..123662TCONS_00029604-exon-sc0000757-1491911889:122643..123662Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1510915933:122643..123662TCONS_00029604-exon-sc0000757-1510915933:122643..123662Clytia hemisphaericaexon
TCONS_00029604-exon-sc0000757-1575043694:122643..123662TCONS_00029604-exon-sc0000757-1575043694:122643..123662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000757supercontigsc0000757:111747..123662 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75853	1.60597	0.695306	0.525646	25.317	17.3205	19.8843	20.078	17.7735	16.301	16.2018	15.6106	9.0344	10.1688	13.5586	11.6945	21.627	22.5245	6.57654	8.87338	18.6361	18.1313	20.3615	21.4021	18.0884	19.0854	20.3502	15.2854	13.1278	12.7429
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0014465_LipOase_AP
IPR023352MAPEG-like_dom
IPR001129Membr-assoc_MAPEG
Vocabulary: Biological Process
TermDefinition
GO:0006691leukotriene metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008047enzyme activator activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006691 leukotriene metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008047 enzyme activator activity
Blast
[Close]
BLAST of TCONS_00029604 vs. Swiss-Prot (Human)
Match: MGST2 (Microsomal glutathione S-transferase 2 OS=Homo sapiens GN=MGST2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.339e-23
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:  171 VTALSAYQMGVFQRKVGKARKKFKVAPPTTLGENVDEGFIRVFRAHQNCVETYTVFLGSLWSCSLLWHQVPASLVGIVYMFGRAKYFRDYSIAADRRMSGFKLS 482
            V+ LSA Q   F  +VGKAR K+KV PP   G      F RVFRA QNCVE Y +F+ +LW     ++QV A+ +G+VY++GR  YF  YS AA +R++GF+LS
Sbjct:   11 VSILSACQQSYFALQVGKARLKYKVTPPAVTG---SPEFERVFRAQQNCVEFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLS 111
The following BLAST results are available for this feature:
BLAST of TCONS_00029604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGST21.339e-2349.04Microsomal glutathione S-transferase 2 OS=Homo sap... [more]
back to top