TCONS_00029611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029611
Unique NameTCONS_00029611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1044

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029611 ID=TCONS_00029611|Name=TCONS_00029611|organism=Clytia hemisphaerica|type=transcript|length=1044bp
TAGATACTTATCTTTTTTTCTGGAGTCGATTAAAATTATTAATACATTCA
AATTGTAAATAAACTTTACAAGTAAAATTAATTCGCTTTACTTTATCATC
TATATAAAATCCTAACAATATCTAAAacttattttcataaaaaaacttct
aaaaaatttctaaaacatCGATTTCTGGATGAAATAATTCGGTAGAAATT
CACAAACATTTTAGTAGTAGGGGCAGACCCTTGAGATCCATGATGTCCTT
TATGGTAAACGACCGGTACGTTTTGAGAGTTTAGAAGAGGCCCACAAACT
AGAATATTTGTACGAAATGGGATTACCGCTTACCGGTAGAGGCAAATTGT
GAAAGACAATGAGGTATCTCTATACATCAGATTAATCCTTGCGGCGCGCT
CGGTTTTtgagggaaaaaagaaaaaaatcattactaGTCTTCTAAAAAGC
TGACTGCACCCTTTATTCTCACTTCCTTTTGGCGCTCAAGTTCTAAAGAC
TCAACTGTATCAAGTCGGGGACACAGCCTTGTTGTCAAATATTCACTTCT
TTCCCGTGACTGTAAACAGTATAAAATCGGGTGATCGTTGACTGTATTCA
CCAGTTTCAAGTTGACCAAANGACTGTAAACAGTATAAAATCGGGTGATC
GTTGACTGTATTTACCAGTTTCAAGTTGACCAAATTATGCCTCAAAAAGT
CTTTGTTGTAGAAAGAACGCAAATAGCTATTCTAAAAACTAAAGGTAAGA
TTGCAGCTGTGAAAATGTAatataaatacatttttttggaagagAGTGAT
TCGATCAATGAATGTCATTTTGTCCACCAAAGCTCTTTGGTAATGGAACC
ATCTTCATCAATAACAACACAACCTTCTATTAACGTAAAGCGAGTCGATC
TAAAccagctcactcacttataacaCACagtgtttctttcatttcttgaA
ATAACGAAATAACTTGAGCCCACATCCGACCATGCTACCAATACCAAGCA
TTGCGATGCTACCAATTGAAAGTTTAAAGCCTGACATCCTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000757:122637..124459-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029611 ID=TCONS_00029611|Name=TCONS_00029611|organism=Clytia hemisphaerica|type=transcript|length=1823bp|location=Sequence derived from alignment at sc0000757:122637..124459- (Clytia hemisphaerica)
TAGATACTTATCTTTTTTTCTGGAGTCGATTAAAATTATTAATACATTCA
AATTGTAAATAAACTTTACAAGTAAAATTAATTCGCTTTACTTTATCATC
TATATAAAATCCTAACAATATCTAAAACTTATTTTCATAAAAAAACTTCT
AAAAAATTTCTAAAACATCGATTTCTGGATGAAATAATTCGGTAGAAATT
CACAAACATTTTAGTAGGGGCAGACCCTTGAGATCCATGATGTCCTTTAT
GGTAAGCGACTTGTGGATAATTCGCCAGTAGAAATGATTCCGGTACGTTT
TGAGAGTTTAGAAGAGGCCCACAAACTAGAATATTTGTACGAAATGGGAT
TACCGCTTACCGGTAGAGGCAAATCGTGAAAGACAATGAGTTATCTCTAT
ACATCAGATTAATCCTTGCGGCGCGCTCGGTTTTTGAGGGAAAAAAAGAA
AAAAANAATTTTTTTCAAAAATCGGGCTCCGTCACTTTTCAGGCATTGCT
ATTTTGTATCATTGTGCAAAAAATTAAAAAAAACTAATGAGCCAATCCCT
AGAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGAATTTTCTATAAATTTTCTCAAAATTCAAACCAATCGAGAGGAACAA
GTCGGATTTTTCCCCCTATTTCAATCAATGACTTTTCATAAACAAAATTA
AATACAAAATTGAAGAAGTATATACTTTATAGATACTTATCTTTTTTCCT
GGAGTCGATTAAAATTATTAATACATTCAAATTGTAAATAAACTTTACAA
GTAAAATTAATTCGCTTTACTTTATCATCTATATAAAATCCTAACAATAT
CTAAAACTTATTTTCATAAAAAAACTTCTATAAAAATTCTAAAACATCGA
TTTCTGGATGAAATAATTCGGTATAAATTTATAAACATTTTAGTAGTAGG
GGCAGACCCTTGAGATCCATGATGTCCTTTATGGTAAACGACCGGTACGT
TTTGAGAGTTTAGAAGAGGCCCACAAACTAGAATATTTGTACGAAATGGG
ATTACCGCTTACCGGTAGAGGCAAATTGTGAAAGACAATGAGGTATCTCT
ATACATCAGATTAATCCTTGCGGCGCGCTCGGTTTTTGAGGGAAAAAAGA
AAAAAATCATTACTAGTCTTCTAAAAAGCTGACTGCACCCTTTATTCTCA
CTTCCTTTTGGCGCTCAAGTTCTAAAGACTCAACTGTATCAAGTCGGGGA
CACAGCCTTGTTGTCAAATATTCACTTCTTTCCCGTGACTGTAAACAGTA
TAAAATCGGGTGATCGTTGACTGTATTCACCAGTTTCAAGTTGACCAAAN
GACTGTAAACAGTATAAAATCGGGTGATCGTTGACTGTATTTACCAGTTT
CAAGTTGACCAAATTATGCCTCAAAAAGTCTTTGTTGTAGAAAGAACGCA
AATAGCTATTCTAAAAACTAAAGGTAAGATTGCAGCTGTGAAAATGTAAT
ATAAATACATTTTTTTGGAAGAGAGTGATTCGATCAATGAATGTCATTTT
GTCCACCAAAGCTCTTTGGTAATGGAACCATCTTCATCAATAACAACACA
ACCTTCTATTAACGTAAAGCGAGTCGATCTAAACCAGCTCACTCACTTAT
AACACACAGTGTTTCTTTCATTTCTTGAAATAACGAAATAACTTGAGCCC
ACATCCGACCATGCTACCAATACCAAGCATTGCGATGCTACCAATTGAAA
GTTTAAAGCCTGACATCCTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016913XLOC_016913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029611-exon-sc0000757-1575043694:124253..124459TCONS_00029611-exon-sc0000757-1575043694:124253..124459Clytia hemisphaericaexon
TCONS_00029611-exon-sc0000757-1575043694:122637..123473TCONS_00029611-exon-sc0000757-1575043694:122637..123473Clytia hemisphaericaexon
TCONS_00029611-exon-sc0000757-1510915933:124253..124459TCONS_00029611-exon-sc0000757-1510915933:124253..124459Clytia hemisphaericaexon
TCONS_00029611-exon-sc0000757-1510915933:122637..123473TCONS_00029611-exon-sc0000757-1510915933:122637..123473Clytia hemisphaericaexon
TCONS_00029611-exon-sc0000757-1491911889:124253..124459TCONS_00029611-exon-sc0000757-1491911889:124253..124459Clytia hemisphaericaexon
TCONS_00029611-exon-sc0000757-1491911889:122637..123473TCONS_00029611-exon-sc0000757-1491911889:122637..123473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000757supercontigsc0000757:122637..124459 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.25962	0.62095	1.03342	2.06522	1.51768	0.909856	1.03707	0.715146	0.461832	0.338841	0.158545	0.297124	0.921735	0.302552	0.648666	0.341389	1.21061	0.413626	0.67215	0.861764	1.11469	1.11731	1.12511	1.16867	0.389998	1.0234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top