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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029624 ID=TCONS_00029624|Name=TCONS_00029624|organism=Clytia hemisphaerica|type=transcript|length=2817bp
ACGTGATGAAAGGAGGAGACATTGAATGTCACGTTAAAAGTTATTTGGGC
TAAAAATATGCATTCCTCAATCTTCAATAACTCATCAAAGTTGCTCCATA
AATTCGCCGAGAAAGTCGCTGCGAAAATGGCTTTACCGTCAGCCGAGAAA
GATCTTCTTTAAACGAATCCCAAGAGAAACATAAAGTGATTTCGAAGCAA
TTATAAGAACTTTGTTCTGACGTCATCAGACATTGATGATAAACGTGCAG
ATAATTTGGTGCTCTATTAGTATAAAGTAAGGTAAAGGGAAAACCCTCTT
TTTATTAGAAGTCGATGATGGTGGattttctttattagaacaTTAGAATA
TGTCAAACAATTCTTGGAAAATGCTTGCTTGTAAGTCACCATCTGGAGTA
GAAAAAGATTCGCATGATTTTGAATGGACAATGACAGAAACATGCCGTGG
TTGTGCTTTTACACTGTAGCTATCTTGTTCTGAATTAGGTAATTCATCAA
CTAAATTAgacgaattttcattcttttttttcaaatcataaccaagcaaa
ataataTGACGTTTACCCTTTAGTTTCTTCTTCGCAAATGTAAGATGAAT
GCCTGAAGATTCAGACACATTCTTTAAAGCCTGGTGAAAAGAAGACTTGT
CTATATTCTTCAAATCATAATTTTGGCTATAAGATATAACTAGTGCCTGT
ATGGATACAGAACCATTTTGTCTGATGACAAGACAATTCTTAAACCAATC
AAGAAGATTCTCAAATTGGGATTCCATTGTCTAAAAAGAAATGAATTAAA
GAATGTATATAGAAATTGATCGCTGATAAGAATTTTTCAATGAAGTAAAA
AAGTATTATAAGTAGATACAagcttttttttcataagaatagtgtacttt
ggatgaaaGGAAGCAGtcttttctgttaaccaaatacaaaatgactgtat
tcttatcaaattctgtgaaactcaccctagagAGCATTCTTAGGGTATCC
TTACAATTTGGCCAATTtccaccctgatattcttatagaagatattctta
caaaaaaacagTGTATCACTTTCAAaggccaaaataaaaaatgtctttAA
TATAAGGGTGAAAAAAGGTtcatttatgaaattgtttaaAGACAAATTAT
GAACAAATTAGATTTATATTTTTATGCGGATGATAAATATTGCACATAGG
CTTTTAAAAAACTTCAGAAGACAACAAAGCAAAAGCATTGGTTTTGACCA
TAACCGAAAAGTTAGCTCTCTCTTAAAGAAAATAGAGAAATGAGGTTTCG
GGTAGCTTCCAGCAGTCAGAACTTCTAACCTTAAAGATTGCAGATGACTT
TGATCCTGACATGGTTGAGAAAAAAGGATTCAACAGAAgtgcaaaatatt
tctttctgtTTGAAGATCAAAGAGAAGAAGAAGGCTACTAGTATTCCATG
GAGATCGCTCTACACATTGTGTCGTTCAACGAAAACACAGTGTTATTATT
ATGTTATTATAAGAATTTATTCAgaaagaaataaagcaaaagcATTAGTT
TTAGGTTGCCTCCAGGAGTCAGAACTTCTAACTTTTATAGATTGGAGTTG
ACTTTGATCCTGACATAGTTGAGAAAAAAGGATTCAACAGAAgtgcaaaa
tatttctttctgtTTGAAGATCAAAGAGACGAAGAAGGCTATGAGTATTC
TATGGAGATCGCTCTACACATTGTGACATTCAACGAAAACACGGTGTTAT
TATTATGTTATTATGAGAATTTAATCAGAAGGCGATAGAGCAAAAGCACT
GGTTTTAGGTTGCCTCCAGGAGTCAAAACTTCTAACTTTTATAGATTGGA
GTTGACTTTGACCCTGACATAGTTGAGAAAAAAGGATTCAACAGAAGTTC
AAAATATTTCTTTCTGTTTGAAAATCAAAGAGACGAAGAAGGCTATGAGT
ATTCTATGGAGATTGCTCTACACATTGTGACGTTCAACGAAAACACGGTG
TTATTATTATGTTATTATGAGAATTTAATCAGAAGGCAATAGAGCAAAAG
CACTGGTTTTAGGTTGCCTCCAGGAGTCAGAACTTCTAACTTTTATAGAT
TGGAGTTGACTTTGATCCTGACATAGTTGAGAAAAAAGGACTCAACAGAA
GTGCAAAATATTTCTTTCTGTTTGAGGATCATAGAGAAGAAGAAGGCTAT
GAGTATTCCATGGAGATCGCTCTACACATTGTGTCGTTCACCGAAAAACC
GGTGTTATTATTATGTTATTAGGAGAATTTAATCAGAAGGCAATAAAGCA
GAAGCATTCGTTTTTTATCAAGATTGTTTTCAGGCTTTAACACAAGAAAT
TAAGTGTTAAAATTGAAAGGTGTAATTCTCATCCATAATCTTGAGAAAAT
ATTTAGCGAGTCTTCACAAAAAGTACCCTGTCAGATTAATCATTTTGAGT
ACCTAAATTTATGGCATCTCCTGTGGTGTATACTATGCGAAAGGTTCAAA
AAGAGCTTTGAAATAGAActtatttttaaatcaaaacaatttagATGAAT
ACAAACTGatacaaaaatcaaataattgtACTGACATAGGCACCTCCAAC
TATCCTTTTTAATTTAAACCTTTCAGTTCCGGAGTTTTAACTGCTACTTT
CCCGACACTAAAAATGACTACCTAATTTGAGATGAGATAACTTTTAAACC
ACAAATACtatgtttctaaaattttctaccTTTTATTCTGAAGgattgca
aaaaataaaataaaaatggcgTCATAAGGGTGTCACATAATCAGAAAATA
CCAAAACATTTTGAGAA Run BLAST on NCBI protein sequence of TCONS_00029624-protein >TCONS_00029624-protein ID=TCONS_00029624-protein|Name=TCONS_00029624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MESQFENLLDWFKNCLVIRQNGSVSIQALVISYSQNYDLKNIDKSSFHQA
LKNVSESSGIHLTFAKKKLKGKRHIILLGYDLKKKNENSSNLVDELPNSE
QDSYSVKAQPRHVSVIVHSKSCESFSTPDGDLQASIFQELFDIF Run BLAST on NCBI transcript from alignment at sc0000760:11367..14183 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029624 ID=TCONS_00029624|Name=TCONS_00029624|organism=Clytia hemisphaerica|type=transcript|length=2817bp|location=Sequence derived from alignment at sc0000760:11367..14183 (Clytia hemisphaerica)
TTCTCAAAATGTTTTGGTATTTTCTGATTATGTGACACCCTTATGAcgcc
atttttattttattttttgcaatcCTTCAGAATAAAAggtagaaaatttt
agaaacataGTATTTGTGGTTTAAAAGTTATCTCATCTCAAATTAGGTAG
TCATTTTTAGTGTCGGGAAAGTAGCAGTTAAAACTCCGGAACTGAAAGGT
TTAAATTAAAAAGGATAGTTGGAGGTGCCTATGTCAGTacaattatttga
tttttgtatCAGTTTGTATTCATctaaattgttttgatttaaaaataagT
TCTATTTCAAAGCTCTTTTTGAACCTTTCGCATAGTATACACCACAGGAG
ATGCCATAAATTTAGGTACTCAAAATGATTAATCTGACAGGGTACTTTTT
GTGAAGACTCGCTAAATATTTTCTCAAGATTATGGATGAGAATTACACCT
TTCAATTTTAACACTTAATTTCTTGTGTTAAAGCCTGAAAACAATCTTGA
TAAAAAACGAATGCTTCTGCTTTATTGCCTTCTGATTAAATTCTCCTAAT
AACATAATAATAACACCGGTTTTTCGGTGAACGACACAATGTGTAGAGCG
ATCTCCATGGAATACTCATAGCCTTCTTCTTCTCTATGATCCTCAAACAG
AAAGAAATATTTTGCACTTCTGTTGAGTCCTTTTTTCTCAACTATGTCAG
GATCAAAGTCAACTCCAATCTATAAAAGTTAGAAGTTCTGACTCCTGGAG
GCAACCTAAAACCAGTGCTTTTGCTCTATTGCCTTCTGATTAAATTCTCA
TAATAACATAATAATAACACCGTGTTTTCGTTGAACGTCACAATGTGTAG
AGCAATCTCCATAGAATACTCATAGCCTTCTTCGTCTCTTTGATTTTCAA
ACAGAAAGAAATATTTTGAACTTCTGTTGAATCCTTTTTTCTCAACTATG
TCAGGGTCAAAGTCAACTCCAATCTATAAAAGTTAGAAGTTTTGACTCCT
GGAGGCAACCTAAAACCAGTGCTTTTGCTCTATCGCCTTCTGATTAAATT
CTCATAATAACATAATAATAACACCGTGTTTTCGTTGAATGTCACAATGT
GTAGAGCGATCTCCATAGAATACTCATAGCCTTCTTCGTCTCTTTGATCT
TCAAacagaaagaaatattttgcacTTCTGTTGAATCCTTTTTTCTCAAC
TATGTCAGGATCAAAGTCAACTCCAATCTATAAAAGTTAGAAGTTCTGAC
TCCTGGAGGCAACCTAAAACTAATgcttttgctttatttctttcTGAATA
AATTCTTATAATAACATAATAATAACACTGTGTTTTCGTTGAACGACACA
ATGTGTAGAGCGATCTCCATGGAATACTAGTAGCCTTCTTCTTCTCTTTG
ATCTTCAAacagaaagaaatattttgcacTTCTGTTGAATCCTTTTTTCT
CAACCATGTCAGGATCAAAGTCATCTGCAATCTTTAAGGTTAGAAGTTCT
GACTGCTGGAAGCTACCCGAAACCTCATTTCTCTATTTTCTTTAAGAGAG
AGCTAACTTTTCGGTTATGGTCAAAACCAATGCTTTTGCTTTGTTGTCTT
CTGAAGTTTTTTAAAAGCCTATGTGCAATATTTATCATCCGCATAAAAAT
ATAAATCTAATTTGTTCATAATTTGTCTttaaacaatttcataaatgaAC
CTTTTTTCACCCTTATATTaaagacattttttattttggcctTTGAAAGT
GATACActgtttttttgtaagaatatcttctataagaatatcagggtgga
AATTGGCCAAATTGTAAGGATACCCTAAGAATGCTctctagggtgagttt
cacagaatttgataagaatacagtcattttgtatttggttaacagaaaag
aCTGCTTCCtttcatccaaagtacactattcttatgaaaaaaaagctTGT
ATCTACTTATAATACTTTTTTACTTCATTGAAAAATTCTTATCAGCGATC
AATTTCTATATACATTCTTTAATTCATTTCTTTTTAGACAATGGAATCCC
AATTTGAGAATCTTCTTGATTGGTTTAAGAATTGTCTTGTCATCAGACAA
AATGGTTCTGTATCCATACAGGCACTAGTTATATCTTATAGCCAAAATTA
TGATTTGAAGAATATAGACAAGTCTTCTTTTCACCAGGCTTTAAAGAATG
TGTCTGAATCTTCAGGCATTCATCTTACATTTGCGAAGAAGAAACTAAAG
GGTAAACGTCAtattattttgcttggttatgatttgaaaaaaaagaatga
aaattcgtcTAATTTAGTTGATGAATTACCTAATTCAGAACAAGATAGCT
ACAGTGTAAAAGCACAACCACGGCATGTTTCTGTCATTGTCCATTCAAAA
TCATGCGAATCTTTTTCTACTCCAGATGGTGACTTACAAGCAAGCATTTT
CCAAGAATTGTTTGACATATTCTAAtgttctaataaagaaaatCCACCAT
CATCGACTTCTAATAAAAAGAGGGTTTTCCCTTTACCTTACTTTATACTA
ATAGAGCACCAAATTATCTGCACGTTTATCATCAATGTCTGATGACGTCA
GAACAAAGTTCTTATAATTGCTTCGAAATCACTTTATGTTTCTCTTGGGA
TTCGTTTAAAGAAGATCTTTCTCGGCTGACGGTAAAGCCATTTTCGCAGC
GACTTTCTCGGCGAATTTATGGAGCAACTTTGATGAGTTATTGAAGATTG
AGGAATGCATATTTTTAGCCCAAATAACTTTTAACGTGACATTCAATGTC
TCCTCCTTTCATCACGT Coding sequence (CDS) from alignment at sc0000760:11367..14183 >TCONS_00029624 ID=TCONS_00029624|Name=TCONS_00029624|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0000760:11367..14183 (Clytia hemisphaerica)
ATGGAATCCCAATTTGAGAATCTTCTTGATTGGTTTAAGAATTGTCTTGT
CATCAGACAAAATGGTTCTGTATCCATACAGGCACTAGTTATATCTTATA
GCCAAAATTATGATTTGAAGAATATAGACAAGTCTTCTTTTCACCAGGCT
TTAAAGAATGTGTCTGAATCTTCAGGCATTCATCTTACATTTGCGAAGAA
GAAACTAAAGGGTAAACGTCAtattattttgcttggttatgatttgaaaa
aaaagaatgaaaattcgtcTAATTTAGTTGATGAATTACCTAATTCAGAA
CAAGATAGCTACAGTGTAAAAGCACAACCACGGCATGTTTCTGTCATTGT
CCATTCAAAATCATGCGAATCTTTTTCTACTCCAGATGGTGACTTACAAG
CAAGCATTTTCCAAGAATTGTTTGACATATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029624-exon-sc0000760-1491911889:11367..14183 | TCONS_00029624-exon-sc0000760-1491911889:11367..14183 | Clytia hemisphaerica | exon |
| TCONS_00029624-exon-sc0000760-1510915933:11367..14183 | TCONS_00029624-exon-sc0000760-1510915933:11367..14183 | Clytia hemisphaerica | exon |
| TCONS_00029624-exon-sc0000760-1575043694:11367..14183 | TCONS_00029624-exon-sc0000760-1575043694:11367..14183 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000760 | supercontig | sc0000760:11367..14183 . |
Blast
The following BLAST results are available for this feature:
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