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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029879 ID=TCONS_00029879|Name=TCONS_00029879|organism=Clytia hemisphaerica|type=transcript|length=1184bp
GCCGGACAGGAAGGTGGCTGTGAGGCTGCCATCCATGCCATGAAATCAAT
TTATGACGACGAGGAGACTGAAGCCGTCCTGCTAATTGACGCAAGTAACG
CATTCAATGCAGTAAACCGAAAAGCCTTCCTACACAACATCAAAGTCGTC
TGTCCGGAAGTCTCAGGATTTGTTTCGAACTGCTATTCAAACCCAGCTCG
TCTTTTTGTTATTGGAGGCTTCGAGCTGCTCTCACAAGAAGGTACGACTC
AAGGAGACCCGATCGCCATGGCAGTTTATGCAATCGCCACGATACCTCTG
CTACTGATGGTGATAAATGCAACGTCAGAGAGCCATCTGGATCAAACGAA
AGCTGAAGCCTACGCTGACGATTTTTCTGCTGCAGGCAAGATCAGTGGTA
TCAGATGTTGGTGGAATAATCTGTGCAGACTCGGTCCATTGTTCGGATAC
TATCCCGAAGAAAAGAAATCTTGGCTGATCGTCAAACCAGGTCAACGTTC
GAAAGCTGAAGTCGAATTTCGTGGTACCAACATCAACATTACTACAGAAG
GCAAACGTCACCTTGGTGCTGCTCTCGGGCCAAATTCATTCCGAGATACA
TACGTTGACGAAAAGATCAAAACTCTATGTGATGAGCTCCTTATACTTTC
GAAAATAGCTCTCATAGAACCACAATGTGCGTACGCCTGTTTTGTAAGTG
GATTCAAGAGCAAGCTTACATTCTTGATGAGAACAATACCAGACATATCT
GATAACATGGTTCCGCTGGACAACATAATCATAACAAAATTCATTCCAGC
AATCACTGGTGGCATTTCAGTCAACGAGGAAGAGAGATTACTGCTATCGT
TGCCAGCGAGAGATGGGGGTCTTGCAATTCCAATCTTCAGTGAACTGTGT
CAGCATGAATATAAGAACTCTAAACTCATCACATCCAATCTATCCGAGAC
AATCATAAGCCAAGAATATGCGTATAAACTTGATCCTCGACTGCCTACAA
AGAAAAACGAAATCAAGAAAGAAAAGAGGGAACGAAATAGCAACATCGTT
CTTCACCTCACAACGACCCTCCAAAGAAATCAAGTCCAGCTGATGGAGCT
CAATCGACAACACGGAGCCTCAGCATGGCTCACGACTTTACCTGTTCAAA
ACGAAGGATACACTCTCAACAAGCAATGTTTCGT Run BLAST on NCBI protein sequence of TCONS_00029879-protein >TCONS_00029879-protein ID=TCONS_00029879-protein|Name=TCONS_00029879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
AGQEGGCEAAIHAMKSIYDDEETEAVLLIDASNAFNAVNRKAFLHNIKVV
CPEVSGFVSNCYSNPARLFVIGGFELLSQEGTTQGDPIAMAVYAIATIPL
LLMVINATSESHLDQTKAEAYADDFSAAGKISGIRCWWNNLCRLGPLFGY
YPEEKKSWLIVKPGQRSKAEVEFRGTNINITTEGKRHLGAALGPNSFRDT
YVDEKIKTLCDELLILSKIALIEPQCAYACFVSGFKSKLTFLMRTIPDIS
DNMVPLDNIIITKFIPAITGGISVNEEERLLLSLPARDGGLAIPIFSELC
QHEYKNSKLITSNLSETIISQEYAYKLDPRLPTKKNEIKKEKRERNSNIV
LHLTTTLQRNQVQLMELNRQHGASAWLTTLPVQNEGYTLNKQCF Run BLAST on NCBI transcript from alignment at sc0000774:110334..111654- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029879 ID=TCONS_00029879|Name=TCONS_00029879|organism=Clytia hemisphaerica|type=transcript|length=1321bp|location=Sequence derived from alignment at sc0000774:110334..111654- (Clytia hemisphaerica)
GCCGGACAGGAAGGTGGCTGTGAGGCTGCCATCCATGCCATGAAATCAAT
TTATGACGACGAGGAGACTGAAGCCGTCCTGCTAATTGACGCAAGTAACG
CATTCAATGCAGTAAACCGAAAAGCCTTCCTACACAACATCAAAGTCGTC
TGTCCGGAAGTCTCAGGATTTGTTTCGAACTGCTATTCAAACCCAGCTCG
TCTTTTTGTTATTGGAGGCTTCGAGCTGCTCTCACAAGAAGGTACGACTC
AAGGAGACCCGATCGCCATGGCAGTTTATGCAATCGCCACGATACCTCTG
CTACTGATGGTGATAAATGCAACGTCAGAGAGCCATCTGGATCAAACGAA
AGCTGAAGCCTACGCTGACGATTTTTCTGCTGCAGGCAAGATCAGTGGTA
TCAGATGTTGGTGGAATAATCTGTGCAGACTCGGTCCATTGTTCGGATAC
TATCCCGAAGAAAAGAAATCTTGGCTGATCGTCAAACCAGGTCAACGTTC
GAAAGCTGAAGTCGAATTTCGTGGTACCAACATCAACATCACTACAGAAG
GCAAACGTCACCTTGGTGCTGCTCTCGGGCCAAATTCATTCCGTGATACA
TACGTTGACGAAAAGATCAAAACTCTATGTGATGAGCTCCTTATACTTTC
GAAAATAGCNATACCAACATCAACATTACTACAGAAGGCAAACGTCACCT
TGGTGCTGCTCTCGGGCCAAATTCATTCCGAGATACATACGTTGACGAAA
AGATCAAAACTCTATGTGATGAGCTCCTTATACTTTCGAAAATAGCTCTC
ATAGAACCACAATGTGCGTACGCCTGTTTTGTAAGTGGATTCAAGAGCAA
GCTTACATTCTTGATGAGAACAATACCAGACATATCTGATAACATGGTTC
CGCTGGACAACATAATCATAACAAAATTCATTCCAGCAATCACTGGTGGC
ATTTCAGTCAACGAGGAAGAGAGATTACTGCTATCGTTGCCAGCGAGAGA
TGGGGGTCTTGCAATTCCAATCTTCAGTGAACTGTGTCAGCATGAATATA
AGAACTCTAAACTCATCACATCCAATCTATCCGAGACAATCATAAGCCAA
GAATATGCGTATAAACTTGATCCTCGACTGCCTACAAAGAAAAACGAAAT
CAAGAAAGAAAAGAGGGAACGAAATAGCAACATCGTTCTTCACCTCACAA
CGACCCTCCAAAGAAATCAAGTCCAGCTGATGGAGCTCAATCGACAACAC
GGAGCCTCAGCATGGCTCACGACTTTACCTGTTCAAAACGAAGGATACAC
TCTCAACAAGCAATGTTTCGT Coding sequence (CDS) from alignment at sc0000774:110334..111654- >TCONS_00029879 ID=TCONS_00029879|Name=TCONS_00029879|organism=Clytia hemisphaerica|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0000774:110334..111654- (Clytia hemisphaerica)
ATTACTACAGAAGGCAAACGTCACCTTGGTGCTGCTCTCGGGCCAAATTC
ATTCCGAGATACATACGTTGACGAAAAGATCAAAACTCTATGTGATGAGC
TCCTTATACTTTCGAAAATAGCTCTCATAGAACCACAATGTGCGTACGCC
TGTTTTGTAAGTGGATTCAAGAGCAAGCTTACATTCTTGATGAGAACAAT
ACCAGACATATCTGATAACATGGTTCCGCTGGACAACATAATCATAACAA
AATTCATTCCAGCAATCACTGGTGGCATTTCAGTCAACGAGGAAGAGAGA
TTACTGCTATCGTTGCCAGCGAGAGATGGGGGTCTTGCAATTCCAATCTT
CAGTGAACTGTGTCAGCATGAATATAAGAACTCTAAACTCATCACATCCA
ATCTATCCGAGACAATCATAAGCCAAGAATATGCGTATAAACTTGATCCT
CGACTGCCTACAAAGAAAAACGAAATCAAGAAAGAAAAGAGGGAACGAAA
TAGCAACATCGTTCTTCACCTCACAACGACCCTCCAAAGAAATCAAGTCC
AGCTGATGGAGCTCAATCGACAACACGGAGCCTCAGCATGGCTCACGACT
TTACCTGTTCAAAACGAAGGATACACTCTCAACAAGCAATGTTTCGCCGG
ACAGGAAGGTGGCTGTGAGGCTGCCATCCATGCCATGAAATCAATTTATG
ACGACGAGGAGACTGAAGCCGTCCTGCTAATTGACGCAAGTAACGCATTC
AATGCAGTAAACCGAAAAGCCTTCCTACACAACATCAAAGTCGTCTGTCC
GGAAGTCTCAGGATTTGTTTCGAACTGCTATTCAAACCCAGCTCGTCTTT
TTGTTATTGGAGGCTTCGAGCTGCTCTCACAAGAAGGTACGACTCAAGGA
GACCCGATCGCCATGGCAGTTTATGCAATCGCCACGATACCTCTGCTACT
GATGGTGATAAATGCAACGTCAGAGAGCCATCTGGATCAAACGAAAGCTG
AAGCCTACGCTGACGATTTTTCTGCTGCAGGCAAGATCAGTGGTATCAGA
TGTTGGTGGAATAATCTGTGCAGACTCGGTCCATTGTTCGGATACTATCC
CGAAGAAAAGAAATCTTGGCTGATCGTCAAACCAGGTCAACGTTCGAAAG
CTGAAGTCGAATTTCGTGGTACCAACATCAACATTACTACAGAAGGCAAA
CGTCACCTTGGTGCTGCTCTCGGGCCAAATTCATTCCGAGATACATACGT
TGACGAAAAGATCAAAACTCTATGTGATGAGCTCCTTATACTTTCGAAAA
TAGCTCTCATAGAACCACAATGTGCGTACGCCTGTTTTGTAAGTGGATTC
AAGAGCAAGCTTACATTCTTGATGAGAACAATACCAGACATATCTGATAA
CATGGTTCCGCTGGACAACATAATCATAACAAAATTCATTCCAGCAATCA
CTGGTGGCATTTCAGTCAACGAGGAAGAGAGATTACTGCTATCGTTGCCA
GCGAGAGATGGGGGTCTTGCAATTCCAATCTTCAGTGAACTGTGTCAGCA
TGAATATAAGAACTCTAAACTCATCACATCCAATCTATCCGAGACAATCA
TAAGCCAAGAATATGCGTATAAACTTGATCCTCGACTGCCTACAAAGAAA
AACGAAATCAAGAAAGAAAAGAGGGAACGAAATAGCAACATCGTTCTTCA
CCTCACAACGACCCTCCAAAGAAATCAAGTCCAGCTGATGGAGCTCAATC
GACAACACGGAGCCTCAGCATGGCTCACGACTTTACCTGTTCAAAACGAA
GGATACACTCTCAACAAGCAATGTTTCGCCGGACAGGAAGGTGGCTGTGA
GGCTGCCATCCATGCCATGAAATCAATTTATGACGACGAGGAGACTGAAG
CCGTCCTGCTAATTGACGCAAGTAACGCATTCAATGCAGTAAACCGAAAA
GCCTTCCTACACAACATCAAAGTCGTCTGTCCGGAAGTCTCAGGATTTGT
TTCGAACTGCTATTCAAACCCAGCTCGTCTTTTTGTTATTGGAGGCTTCG
AGCTGCTCTCACAAGAAGGTACGACTCAAGGAGACCCGATCGCCATGGCA
GTTTATGCAATCGCCACGATACCTCTGCTACTGATGGTGATAAATGCAAC
GTCAGAGAGCCATCTGGATCAAACGAAAGCTGAAGCCTACGCTGACGATT
TTTCTGCTGCAGGCAAGATCAGTGGTATCAGATGTTGGTGGAATAATCTG
TGCAGACTCGGTCCATTGTTCGGATACTATCCCGAAGAAAAGAAATCTTG
GCTGATCGTCAAACCAGGTCAACGTTCGAAAGCTGAAGTCGAATTTCGTG
GTACCAACATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029879-exon-sc0000774-1575043694:111118..111654 | TCONS_00029879-exon-sc0000774-1575043694:111118..111654 | Clytia hemisphaerica | exon |
| TCONS_00029879-exon-sc0000774-1575043694:110334..110980 | TCONS_00029879-exon-sc0000774-1575043694:110334..110980 | Clytia hemisphaerica | exon |
| TCONS_00029879-exon-sc0000774-1510915933:111118..111654 | TCONS_00029879-exon-sc0000774-1510915933:111118..111654 | Clytia hemisphaerica | exon |
| TCONS_00029879-exon-sc0000774-1510915933:110334..110980 | TCONS_00029879-exon-sc0000774-1510915933:110334..110980 | Clytia hemisphaerica | exon |
| TCONS_00029879-exon-sc0000774-1491911889:111118..111654 | TCONS_00029879-exon-sc0000774-1491911889:111118..111654 | Clytia hemisphaerica | exon |
| TCONS_00029879-exon-sc0000774-1491911889:110334..110980 | TCONS_00029879-exon-sc0000774-1491911889:110334..110980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000774 | supercontig | sc0000774:110334..111654 - |
Blast
The following BLAST results are available for this feature:
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