TCONS_00029990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029990
Unique NameTCONS_00029990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029990 ID=TCONS_00029990|Name=TCONS_00029990|organism=Clytia hemisphaerica|type=transcript|length=727bp
TAGTATGTAAGAAAAAATAATGGAAttaataacaataaaaacaattacac
GAATTTATAATGTTATAATTTACGATATATATACATCTTTTATACAACAT
TGAATATACAGCACATGTAATCATGATTTGTCTGTGCATAAGGAATATTA
TCGATTGCGGGATTCGACAGTCGAGCTTTCCAAAGTGTCCAGAATATTGT
TAGCGATTGATGagggaaatgcatcaaaattcATGGGGAAGAAACTCTCC
GAAATAACCATTGAAGAGTTACCACCTGTCATCCCCTTAGAGGACGTGGA
CGATGAGAGTTTAGATGAGGATATCGTACAACAAGGTGACAAGGCCGAAG
CCGAAGTAAAATCATCATCCAATTCTACCTCATTCAATTCTCTACCTAGA
TCTTCTCCAAAGACGCAAAAGACTGTCAAAGGTCAAAAACTTAAATGGTC
AAAAGAGGAAATAAAAATCGTGACAGAAGGTTTCCACGACTTCATCATAA
GCCCTGAAGATGATTTGCCCGGCAAACACCTGTGTGATCTATTAATCCAG
GACAACCCGATATTACAACGAAGAACATGGTCTaaagttaaagattttgt
tcgtaattacaaaaagaatttaaagaaaCTTAAATAGACGAAGGAGAAAA
GACgaagaacaagaagaagaaaagttaatgtcatttttttttaaatatac
tgCTTTAAAAACGGTACTATGATGGGA
Run BLAST on NCBI

transcript from alignment at sc0000781:112188..116785+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029990 ID=TCONS_00029990|Name=TCONS_00029990|organism=Clytia hemisphaerica|type=transcript|length=4598bp|location=Sequence derived from alignment at sc0000781:112188..116785+ (Clytia hemisphaerica)
TAGTATGTAAGAAAAAATAATGGAAttaataacaataaaaacaattacac
GAATTTATAATGTTATAATTTACGATATATATACATCTTTTATACAACAT
TGAATATACAGCACATGTAATCATGATTTGTCTGTGCATAAGGAATATTA
TCGATTGCGGGATTCGACAGTCGAGCTTTCCAAAGTGTCCAGAATATTGT
TAGCGATTGATGagggaaatgcatcaaaattcATGGGGAAGAAACTCTCC
GAAATAACCATTGAAGGTATGAAAATCTCTAGTCGAGAGTTTTAAAACCA
ATGGTATTTTCATCACCGTAACATTTCGAATACATTGGGTTTCAACATGA
AGATATAAACGACTAGAGATCCATATCCTTGTGTTTTTGTAGAAAGCcat
gctagcttcgttgccgccatgttaaaatcataaaatgaaacaattgattt
tgatgatatacNCTCCTTGTGTTTTTGTAGAGAGCCATGCTAGTTTCGTT
GCCGCCacgttaaaatcataaaatgaaacaattgattttgatgatatacc
tccGCGGAATACTTATTAATGACGACAACACTTCGACAAAAACCTCAGTG
GCTCAACTCTTTTCATCTCTTTTATTTACATCATGAGAGGCAAAATCCTT
GTCAGCTTATTAAAACTCCAACTAATATTTCGAATAATTTTAGAGTGTCG
GTTTCAtattatgatattcttataacaTTACCTTTCAACTTTAACATGCC
CTTTTTTCAAAGCTACAAAAAAATCATTCGTGTGATAAAAGAGATTccaa
agtatacacgcagttgaaatccTACAGTTCAGCGTcgtaaaatgttgata
aaatttcTTGCAAACTTATGAGATAGtttgagaacctttttttgtgaaat
acaAGTAATTTTCAAGCTGGATCAAAGTTTTTAAAtgcaaaatcaaagaa
aatgaaattgtgaCGGAGTTTTGTCGGattttaaatatcaaatttgaaaa
acaggcggcaacgaagctcgctttcAAAGACACAATAAAAGATGGATCTC
CAGTCGTTTGCATTTTCCTGGCTTCAAGCAACTTTCGTATTCATGATGAT
GTATCACGTTCAAACTTGTGTTTTCAAATTCTACCTGTGCAAGAACTTTC
AATCCTAATTTCACCATATCGAAACTTCGCTATGGTGATTTTTGCCTGTA
TGGTGttaaaataattcaataattcataaatcaaaatgataaaaaatgcc
AGCGACGTTTTCATTGGCCGAGTTTAANATTCTACCTGTTCAAGAACTTT
CAATCCTAATTTCACCATATCGAAACTTCGCTATGGTGATTTTTGCCTGT
ATGGTGTTAAAATGATTCAATAATTCATaaatcaaaatgataaaaaatgc
cAGCGACGTTTTCATTGGTCGAGTTTAAACATTTAATACTTGATGTAAGC
CCTGTTCATACTTGAAATTAACAATCTTCAACCATTGTTCTTGATTTCTA
TTCATAGAGTTACCACCTGTCATCCCCTTAGAGGACGTGGACGATGAGAG
TTTAGATGAGGATATCGTACAACAAGGTATTTTTCTATGATAATTCTTTA
CACACAATAGTCTATCATAGAAACTTTCTTACAGTACTGAGCTTAACTTG
ACGAcacacaatttttttccataCACAGGTTTTTCAGGTTCGGTCAACTT
ACGTAATTTATgacattatggaagcaaacattATTTTCATCACTGTGAAT
TCATTCTATCTGATTATAATTCTATGATTTTATTACCCATTACATCCGAG
GGGGGGAGATTAGGGATCCCATAGGCCCATAGGAGACCACCCATTACATT
TTAGAGGtgaatttgtaaaaaatctaaATGAAGAGAACGATTTTAGCCAT
ATAAGAGGCCTCGagatgtaaaaaaaatttccattggcgcaaaccatggt
tgcgcctcctatAAATTCCGAACCCCCAATATTTTACCTCATCCGATCGG
TTCAGAACAGCGGtacataagaacaattttactgtaccgggtgacccacg
aaaaagttcggacctttctcggcgtcttgaggccgaacaaatgtcccaaa
gtgctcggaattttggtatttaaaaagNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNggggggggggggcactcgaggtaagtgacctaccgcgTACCCAT
TTTTTTCAGGCTTctgaaagtgcactgtaagaaTCAACGAGAGaggagat
gcactgtaagggtctaaaatttgggaaaatacgaaatttttgGGTCAATT
TGGGAAAATTCCGAAAAATTGCAccataagggtcgatttttagccatttt
tttcctgcactgtaagggtcgatttttaaaGGCCTTAATTTTGTCCGCAC
ATActgtcgttttcagatcgagtgaaATTTGGCGTGATCAAGTGGTTGGT
GACCCCGCTGGGGGCTCTTATAAAATAGATAATCGCTTACACGTTTTATT
AAAAACAAGATTCATTGgagtttgttgaatttttttataggCCAAATCAA
GCCTCGTTTTTTTGCAAGGGTTATGCTTAGAAATGATGAATATATCTAAT
CATTAGGTGACAAGGCCGAAGCCGAAGTAAAATCATCATCCAATTCTACC
TCATTCAATTCTCTACCTAGATCTTCTCCAAAGACGCAAAAGACTGTCAA
AGGTATGTTTTCTGttgttttcataatttcaaattcGTAATTTAGAGAGA
TGACCAGCCatattatttttggaaaagaggCTCAGTTATGCTTAGCTATA
TTCAAGCTCAAATTATGCTTgtgatatgcttatttttcctaaaaaaatga
GATTANCCTTAGCTATATTTTGGAATCAAGCTCAAATTATGCTTgtgata
tgcttatttttccgaaaaaaatgagATTAATTTTTTCTGTAGATTCTTCT
GTCACCAAATTGAGTGCAAAAATAGCAAACTGTTCATTCACTGAATTTTT
CTAAGGTTAAtttaaaatggaaaagaaaaatgaatctTCCCAAGTACACA
ACCGATGACCAATGACCCTAGTTCACTAATATGCTTATGATATActtatt
ttttcaccaaatccaggtctcagtatgcttataaacgttatgcttataaa
ataaacacATGTATTTTCATATATCTCTGTTATCAAGAACAAACATCTCT
TACATCATTTAGTCGAAAACCTCGCAAAAAATAACTTCGAAGAAGCTGTT
GTATTATTCTTTTTTAAAGGTAAACAGACAAGAAGCTCACAAAGAAAATT
GCGCTAAATTATCTAATTATTACTAGTCGGCTATATCAATCCTCGTCTTA
TTGACGACCTCCGTTCTAGGGGTCAGGCACTGTatatcttttggcatttt
tggaaaaatgcgATACCTCGATTTGGCGCAGATGTAGAGTTTTGTGACCC
CTATAGGGGTCATCATATCATATTATATCATCACATTTACCGCATCCCTT
TAGGGATCCTGTTTAATTTTCATGTAGAATAGGTTAGACGGGGTTATGCA
GGTTCTTCTCTCTAAAGGGATGCGGTAAATGCGATGATATGACAACATTG
TCTAACCGATTCTTTTAACAATGCGTTCTACTTTCCCTGAAAACAAAAGC
AGAAAAAGTCCTCATGTTTACATTAAGCTCGATATGACATGCTTTGGTGC
AAATTCTTTACATCGGCCAATCTAACCGCTCAGAAACTTATTTCATATAA
TATTCATCACAAATCTTGATGAAAAACTTGAACCAGTACCGCAACCCTTG
GTAATCCTCTTGCGTAGTAATCAGAatccttttcaagttttgatCATGTT
GATGAGTTAATCTTTTCGCTCTTTTGGGATTAATTCAAGTCCTATTGCCC
TTTTTACTATACAGAAGGCTTTGTCATGGGTATAAATTAATAAGGGCGAG
AAAATCGCGTTCACCTACAATTGTTTTATTAACTTTTATTAATTGTTTTC
AGGTCAAAAACTTAAATGGTCAAAAGAGGAAATAAAAATCGTGACAGAAG
GTTTCCACGACTTCATCATAAGCCCTGAAGATGATTTGCCCGGCAAACAC
CTGTGTGATCTATTAATCCAGGACAACCCGATATTACAACGAAGAACATG
GTCTaaagttaaagattttgttcgtaattacaaaaagaatttaaagaaaC
TTAAATAGACGAAGGAGAAAAGACgaagaacaagaagaagaaaagttaat
gtcatttttttttaaatatactgCTTTAAAAACGGTACTATGATGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017143XLOC_017143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029990-exon-sc0000781-1491911889:112188..112453TCONS_00029990-exon-sc0000781-1491911889:112188..112453Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1510915933:112188..112453TCONS_00029990-exon-sc0000781-1510915933:112188..112453Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1575043694:112188..112453TCONS_00029990-exon-sc0000781-1575043694:112188..112453Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1491911889:113695..113763TCONS_00029990-exon-sc0000781-1491911889:113695..113763Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1510915933:113695..113763TCONS_00029990-exon-sc0000781-1510915933:113695..113763Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1575043694:113695..113763TCONS_00029990-exon-sc0000781-1575043694:113695..113763Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1491911889:115094..115189TCONS_00029990-exon-sc0000781-1491911889:115094..115189Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1510915933:115094..115189TCONS_00029990-exon-sc0000781-1510915933:115094..115189Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1575043694:115094..115189TCONS_00029990-exon-sc0000781-1575043694:115094..115189Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1491911889:116490..116785TCONS_00029990-exon-sc0000781-1491911889:116490..116785Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1510915933:116490..116785TCONS_00029990-exon-sc0000781-1510915933:116490..116785Clytia hemisphaericaexon
TCONS_00029990-exon-sc0000781-1575043694:116490..116785TCONS_00029990-exon-sc0000781-1575043694:116490..116785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000781supercontigsc0000781:112188..116785 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.26956	0.769077	0.606947	11.596	11.2086	2.71951	2.75431	0.762893	1.29563	4.05279	1.53476	1.4747	0.782078	0.23083	1.3512	0.451692	1.83451	0.912291	0	1.48353	1.0457	0.426023	0.999521	2.42003	5.80668	0.353238	0	0.202274	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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