TCONS_00030006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030006
Unique NameTCONS_00030006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030006 ID=TCONS_00030006|Name=TCONS_00030006|organism=Clytia hemisphaerica|type=transcript|length=1314bp
CNAAAAGCTGGAGCCAGAGGACAAGAAAACTTTTCAATTGTTTCATAATA
TTCTGAAAAAGtGTAATTTGACCAAGGAGTTCAGCAACAAGGTGGACAAT
AACGGTTTCACACCTTTGCTATCATTCGTCTACAACATTGCAAGTAAAAA
CCAGATGAAGAGAGCTCTACCGCAGTACACCAAGCTTGTTAAAACTTTGT
TGACAGAATGTTTCGTTGATACCGATATTCTGGTTCAAAAGACGGCAATG
GGACCTGACGACAAGCCTGCTCTACAATACACTTTGAGGCCTAAACCCTC
CCTGGATTACGAAAAATCagatgaaaatcaagaaaagttCAAAGGTTACA
ACAGCTTTGGACAAATGAACATTTTCCATTTACTTGCTATGAAGAATATC
AGCCGAGAAGTTATGGAGGTGTTTTacaaacatgtgcccaaaattGGTGA
ACTCCTGAATGCCAAAGATCTTCATGGTCGCACCCCTTTACATTACAAGC
TGATGAATACTACCAATTACACGCAAGACTTTTTGGATCATGGAGCGAAC
GTTGAAATAGGGTCAAGTAATAAGGAGAAAGATGAACTGGCACCTACTCT
AGTGATTGCGATGAAATCTTGGATTAAAATCACGAAAGCAGATGAAATTG
ACGAGGAAGAAAGATTTGGTGGTTCCTCTACAGAAGAAATAGATGACGGC
TTATTAGCAGTATTGAAAGAATGCAAAAATGTCAACCTAGTTGACCAGAA
TGGAATGTCTGCTGCACATCACGCCTCGCTTAAGAAAAAGCCTTCTGTCA
GCAAGAAAATTGCTATTTTCAAACGTCTCTTGAAAGCTGGTCTCGATGTG
AACGCGCAAGATGACAAAAATGGTCGCACAGTGTTACACAATCTAGTAAT
GCTGGCATCAGGTGATTATGAAACAACCAATGAACTTGAAATATTGCTGA
TATCTCATGGCGCACTATTAGATGTTGAGTGTTCGCGCGGTCGCTTCCCG
ATTCATTACGCATTCTTTGACAAATCAAACAGCAAGAAATTGGACTCGAC
AAACATTTGCGATCCCATGTCTCTCATTCATCTTTTGTGTACTGAATACA
ACCAATCTAAATTCAACATGAAAAATTACGTCAGTCATCAAGACAATGAG
GGGAATACGCCGTTGCATTATGGGTGCCAACGTGGTGCGACTATCTCATG
CATGCAGttgaaaaagCTTGGTGCAGACGACAAGCTGACAGATAAGAATG
GAAACACGCCTTTGGCTATCGCATTGAAAAACAAGCATCATGGCACTGCT
ATGATGATGCTTCA
Run BLAST on NCBI

transcript from alignment at sc0000782:7957..13315+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030006 ID=TCONS_00030006|Name=TCONS_00030006|organism=Clytia hemisphaerica|type=transcript|length=5359bp|location=Sequence derived from alignment at sc0000782:7957..13315+ (Clytia hemisphaerica)
CNAAAAGCTGGAGCCAGAGGACAAGAAAACTTTTCAATTGTTTCATAATA
TTCTGAAAAAGGTATCTCACGTAGTCTTTCTTtcacaaattattttttat
ttcagaaatttcaaaaacctggCGCGATCTTTTTCAAATTGTCGCAATCT
TGAACAGCGACAGTTTGAGAATCATCGAATGCCATATAAACATTATGCTC
CATACCGCGAAATTCCtataactcaaacaaatttgtgtttcccgtgcgtg
ttcgagctGTGGAGACTGTAAATTATAtcaatttatattattttcttttt
catcagtGTAATTTGACCAAGGAGTTCAGCAACAAGGTGGACAATAACGG
TTTCACACCTTTGCTATCATTCGTCTACAACATTGCAAGTAAAAACCAGA
TGAAGAGAGCTCTACCGCAGTACACCAAGCTTGTTAAAACTTTGTTGACA
GAATGTTTCGTTGATACCGATATTCTGGTTCAAAAGACGGCAATGGGACC
TGACGACAAGGTTAGTTTTCTCATTAGATGCTGGTTAGATGCTACACGGA
CATTCCTCAAGGTGTCCTGTAACCTACCggtcaatgttcttagccaaatt
attatttttctaattattgaaaataaataaaaaatgtcacggtggagtgt
gttggtttgagttttctagagaCTTATTATTAAGCTGCGCATTTTTTTGA
TAGTTGATTATTATTAACTAGGTCAGCGCGTTTCAAACACACTGTTGGCG
ATCGCTTATTTCCGACAAAATCATCGGAGATCTGTAGTGTTCActaagaa
attaattttcactTTGTCCATTTTTTCGTTTAGTCGTAGAAGGGCAAGGT
TAATGGTTTATTACTTTACACCCTGCGATGCGGATCTGTCCCTGATAAAT
TATGGCAAGATTAGAGCAGCTAGACGAAATTATAAAGTCGAGTAGAATGG
TCGATTGAACCTTACCTctttaaaagttgttttgttACTGAGTCCATGCA
ATTTCAATTCACGATACTTATTTTACTATCAAAATCgttgtagtaaaaaa
caaaatgtttacgcatgcgttttaaaacaGCTGTGAAATTATTGTCTCGC
TTAAAGTAAATTAATTTAACAGCTCTAAGCATAATGTGGCATATTGAACA
TGGATAAATGAGACAAACATTGAAATGATAGgggaatgacgtcataaacc
aTACAAAAGTGATGAATACAATTGACTACTTAAGGCTGTTATACATTTTA
TTTGATCTGCAACTTTTGCCATTATTAGTCAGTACATTTCACATGATCAA
AGCAAAAGTAAAGCGTAGACCCTAGAGAAAAAAGTTACACTTTGAGGAAG
GGGATGGGATATAGCctgaagaaaatttaaaatctctcctattcagacaa
aatgtaaggaaactaatgagtttataaaggtaagcgagtcaaacatttac
tttcgatttcaaaaacgagATTTGACTTGTATATCTACACTGTTAAAATC
GCCCTCAGGCGATCGAAAATatttctttttcaaaagtcttttgttgatag
tttctctttccaaattattttctcaaaaatgtttaattttattatcaggt
aggtccataaaagtatagctggtgatatcaaaatcaaaatcttcttaATT
TTATATCTTCTACTAGCCTGCTCTACAATACACTTTGAGGCCTAAACCCT
CCCTGGATTACGAAAAATCagatgaaaatcaagaaaagttCAAAGGTTAC
AACAGCTTTGGACAAATGAACATTTTCCATTTACTTGCTATGAAGAATAT
CAGCCGAGAAGTTATGGAGGTGTTTTacaaacatgtgcccaaaattGGTG
AACTCCTGAATGCCAAAGATCTTCATGGTCGCACCCCTTTACATTACAAG
CTGATGAATACTACCAATTACACGCAAGACTTTTTGGATCATGGAGCGAA
CGTTGAAATAGGGTCAAGTAATAAGGAGAAAGATGAACTGGCACCTACTC
TAGTGATTGCGATGAAATCTTGGATTAAAATCACGAAAGCAGATGAAATT
GACGAGGAAGAAAGGTTAGTGTCTTTATTACTGTAAAGAAAGATTTAGTC
TAGGAGGGTTTCCCCAATATTTTCACTATTGACTATCTTGCAGTGGTAGA
TCAACTGAAACGCTTGAGTTAGTGAAACTCTAAATTCCGTGACTATTTTC
AAGAAGAAATCATAaataatttccttttttcacctgTTAGTTTTGGTAAA
ATTTTGTTGAGAAGATCTTTTATAACAAAGAtaatgtttttgcttttttc
atcAGATTTGGTGGTTCCTCTACAGAAGAAATAGATGACGGCTTATTAGC
AGTATTGAAAGAATGCAAAAATGTCAACCTAGTTGACCAGAATGGAATGT
CTGCTGCACATCACGCCTCGCTTAAGAAAAAGCCTTGTAAGTTTTCCTAT
ACATCGTTAAGCTTCCAGATTTATCAGTTGAACTCTAGacattttcaaaa
caccaaaatGTGAGCAATTTTAACAGCATCTAACCACGCATCTGATCATA
GATCTACCGTATATGATATCCCCTTCAGCAGCACTGATATCATCAGGACA
AAGTTCCAGATATGCTTAGATATTCAGTTTAGTTTTTGGACCATCATtac
tttaaccctattattatcaggctttttcgggttttgtattctcaagggtc
ACCCCccggtgttttccaccagccttgcataacttttgatctagaaaaga
tttGGACTTGAAACTTTGCAGAAATGTtttctaccataaaaggagttaat
agaaaaaaatttgggttaatgacgtcatcatgaaggtgatgacgtcatca
caaagtttcacaattatcgctgaccaatgaaaaagtactattcaataaat
tagcaattaaagttgaacgaatggagatttttcaagcctgttttgaattt
ctaaaagcaaaaaagaataCCTTTAACAtaatttgccggtttttaacata
ctaataaaattagggttatattaaaagtcagaaactttcagagtgttaca
aaaaattttcagtgagcttATTAGCAAAAGAgggccagcctggtggaaac
cccccctgataaaaataagGTTAAggaataatcagatggtttgtacAATT
TTGCATGTGGgatccttctattgtcctgagcaaaatcttaaaatattttt
agctaactattttccaaagtttaGATATATAAGTTACAAGTGTTTGGTTT
TtaggatgaaaacaatagaatttgaaCGTAAGAAACGTGTAAGAACAAGA
ACCCATttgcaaaaatatcaaattttgatatctcgattttggaaaattgt
tacacaaTTAAATACTTTGAAGTTTTACTAATGACCACAGAAGATTTCTG
taatctaaatatctcaaaccatctgattatccctttaaagacTCCAGAAT
CTTTTATCAATTGGATCTTGAACATTTTTCGAGATACCGAAAAGTTTGCA
AATTGAAAGAAAGTCAATCTATAAATGAATCTTCATATTTTCTTATAGCT
GTCAGCAAGAAAATTGCTATTTTCAAACGTCTCTTGAAAGCTGGTCTCGA
TGTGAACGCGCAAGATGACAAAAATGGTCGCACAGTGTTACACAATCTAG
TAATGCTGGCATCAGGTGATTATGAAACAACCAATGAACTTGAAATATTG
CTGATATCTCATGGCGCACTATTAGATGTTGAGTGTTCGCGCGGTCGCTT
CCCGATTCATTACGCATTCTTTGACAAATCAAACAGGTAAGGGGATAATT
GctttttattataaacataCTTTCGTGTTTACGTACGTGTTTCACAAAGC
CGATTTTTCGTAAAAGTAAACTTTTTATAAGGCTGGTGTCATTTGATGGT
CCTGTATGATCCCTTATCTACATTTAAACGCTAAGAATCGATATAAAATA
GAAAGAGTGTAGAGAAAGTTCGTTTCGAATAGTGCCCGACGTTTTTGACA
TTTGTCTGCTTGGACAAATAATTAATAtataaagttcttccgtctcattC
AGACGGATTTCCGTTTCCAGGAAGATACAAATAAGGCTTCTCTTTCTTCA
AGCTCCACAAAATTatgcaaagttttaaaaattgttgtttAAAGTCCGAT
TTCCAGCCTGGGTCAAAAAATGTGCTTTTACCACTATATAATCAAAGCGA
TGCGAAGCTTtggatatttttcaaaaagtattcTACTTGGTTGATTCTTG
ATTTTATTTCAGCAAGAAATTGGACTCGACAAACATTTGCGATCCCATGT
CTCTCATTCATCTTTTGTGTACTGAATACAACCAATCTAAATTCAACATG
AAAAATTACGTCAGTCATCAAGACAATGAGGGGAATACGCCGTTGCATTA
TGGGTGCCAACGTGGTGCGACTATCTCATGCATGCAGttgaaaaaggtat
ttttgagaaattgtgGAGTAGGTAGGCCGGTTGGCGGACGGGGttattca
acaaaattttaagaatgtgTTCGTCAATTTCTTGCGTAAAattccgtctc
agacgaaaaattttgttttgactaCTGGTGATGATGCCTTCTGTCATTGC
TCTATCAGTGGATCAGAACCTTCTCGCACGTTGGTCTTGACTTTTATCTT
CGTGTCCCTTACAAATGGAAGACAACCCCCGTCCCCTTGTTTTAGCtggt
ttatgtatgtgtgttttccaGCGACTGAGATTGTTAGGGTTCGACTTGGC
TAGATCATGACAACTGAGGACGACGCTTAATCAGcatttttaccgtcctc
gattttgcgggtcaaaagctttaagtggacacTAGGCTAGTCAAAACTGA
GTTtcattccaaatcgcttcagtcactctgcTGTCctcaaaaagtgcaaa
tactTAAACTCGCTAATATCTACCACCTGGACAGCACATGGgaaattttg
tttgctttttcttAGCTTGGTGCAGACGACAAGCTGACAGATAAGAATGG
AAACACGCCTTTGGCTATCGCATTGAAAAACAAGCATCATGGGTAAGAAT
CAGTCTGAgatcaattttctaaaattgtttTCTATTATTAGTTTAGTATC
GACCGATTCAAAAGTCAGTTTGAtaccatttttgagaaaaagtcaCCCTT
GCTTCTAGAACGAAAGATAAAGCGGGGTTTCGTTTTATAAGCAAAGTATG
TCATGCCTCACTTCCCAGTTAGCCTGTAGACAATATTGTGATGCAACAGG
ACGGCTTCAGAAAGCCCATTCTTCATCGAGAAATATATTCCGATACTTAA
CTTCGCTAACAAGAGTGGCTTGACTATTATTTTCTTAGCACTGCTATGAT
GATGCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017157XLOC_017157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030006-exon-sc0000782-1491911889:7957..8017TCONS_00030006-exon-sc0000782-1491911889:7957..8017Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:7957..8017TCONS_00030006-exon-sc0000782-1510915933:7957..8017Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:7957..8017TCONS_00030006-exon-sc0000782-1575043694:7957..8017Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1491911889:8263..8466TCONS_00030006-exon-sc0000782-1491911889:8263..8466Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:8263..8466TCONS_00030006-exon-sc0000782-1510915933:8263..8466Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:8263..8466TCONS_00030006-exon-sc0000782-1575043694:8263..8466Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1491911889:9623..10020TCONS_00030006-exon-sc0000782-1491911889:9623..10020Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:9623..10020TCONS_00030006-exon-sc0000782-1510915933:9623..10020Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:9623..10020TCONS_00030006-exon-sc0000782-1575043694:9623..10020Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1491911889:10262..10392TCONS_00030006-exon-sc0000782-1491911889:10262..10392Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:10262..10392TCONS_00030006-exon-sc0000782-1510915933:10262..10392Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:10262..10392TCONS_00030006-exon-sc0000782-1575043694:10262..10392Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1491911889:11505..11742TCONS_00030006-exon-sc0000782-1491911889:11505..11742Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:11505..11742TCONS_00030006-exon-sc0000782-1510915933:11505..11742Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:11505..11742TCONS_00030006-exon-sc0000782-1575043694:11505..11742Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1491911889:12219..12402TCONS_00030006-exon-sc0000782-1491911889:12219..12402Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:12219..12402TCONS_00030006-exon-sc0000782-1510915933:12219..12402Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:12219..12402TCONS_00030006-exon-sc0000782-1575043694:12219..12402Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1491911889:12922..12998TCONS_00030006-exon-sc0000782-1491911889:12922..12998Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:12922..12998TCONS_00030006-exon-sc0000782-1510915933:12922..12998Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:12922..12998TCONS_00030006-exon-sc0000782-1575043694:12922..12998Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1491911889:13295..13315TCONS_00030006-exon-sc0000782-1491911889:13295..13315Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1510915933:13295..13315TCONS_00030006-exon-sc0000782-1510915933:13295..13315Clytia hemisphaericaexon
TCONS_00030006-exon-sc0000782-1575043694:13295..13315TCONS_00030006-exon-sc0000782-1575043694:13295..13315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000782supercontigsc0000782:7957..13315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.153	1.49768	0.014187	0.911464	1.28718	0	0	0	1.1511	3.39888	3.11978	1.19471	1.45928	2.1384	1.96791	1.86496	2.00191	1.3904	1.95421	2.73409	2.41184	1.59607	0.361414	2.05938	0	0	0.694577	0.12757	1.03954	0.735087
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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