TCONS_00030010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030010
Unique NameTCONS_00030010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030010 ID=TCONS_00030010|Name=TCONS_00030010|organism=Clytia hemisphaerica|type=transcript|length=345bp
CAAAATCTTCTTGGCAATAAAATCACTCAATAAGAAAATTCCACAAGGCA
CAGAGCTTAGgTATAACTATGATGACCGTGAAGAAAGAATGACATGGAGG
GAAGATGATGCAAGTTGGAACCCCCGTCAAATTGATGACTGTCAAGGTTG
TAAGGGCTTGACCCATGATGACCATGGTGACTGCGATGACGGCGATGCTG
ATGATGAAAGTGAACACCACAATTTCAATTCAACGGTTATTGGAATAGAT
GAGactttagtgaaaattgatGATGCCAAATTGACCAAAATGGTTAAAGA
TTTGATCGGTACTGTGGAAGAGATTTTAAATCAGAAGGtattcat
Run BLAST on NCBI

protein sequence of TCONS_00030010-protein

>TCONS_00030010-protein ID=TCONS_00030010-protein|Name=TCONS_00030010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
KIFLAIKSLNKKIPQGTELRYNYDDREERMTWREDDASWNPRQIDDCQGC
KGLTHDDHGDCDDGDADDESEHHNFNSTVIGIDETLVKIDDAKLTKMVKD
LIGTVEEILNQKVF
Run BLAST on NCBI

transcript from alignment at sc0000782:100852..105473+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030010 ID=TCONS_00030010|Name=TCONS_00030010|organism=Clytia hemisphaerica|type=transcript|length=4622bp|location=Sequence derived from alignment at sc0000782:100852..105473+ (Clytia hemisphaerica)
CAAAATCTTCTTGGCAATAAAATCACTCAATAAGAAAATTCCACAAGGCA
CAGAGCTTAGGTATGTGAGATTCGTATTCCATTTTTAATAAACACACCCT
TGTGTGACAGATCCGGTTAGGACCCCCGCCCCACTGGAATAATAAGCAAA
TTTTACACTGCACTGCAAGTGTCGGAATTTGAATGTCCAATTTTTGGCCC
TGTCGTTTTTAAATCgagtgacccccccccccccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccc
cccccccggcaacAGAAtggtttttcttcaatttcattGCACTGGCTAAA
ACGTTCTCCTGTTAGTGAGACCGATCCTGATACAAATGATGATGCTTTAA
GTAAATGATTTCTAAGACACGCCAAGCAGCTAAAGTTTAACATAAAGGGT
GACACTAGTCATTTCCAAGCACAAGACGGATCCATAAGGTTTCAATATAA
CTGACAGTTTTGCGTTCGTCTATTTTGATGTTAGAATATCACTCTCCATA
GATTTTGAAACCCTTTTCAAAATTGAtctgaaaatgttttctttttgtag
acctttactttttaaatattgtaatttttagCTTCTTTATCCTCTTCTTG
gctaaaatttaaagaaaaatctttaaatttgatttgctcctcatttaatt
tttagaatttaaaaaatattgtacggaaaacaACTTCGAGGATTATTATC
GCCCGTTCACTTTCATTTGGGTAATCgttaaaaaatgatatatttaTTTA
ATGCGTGCAGGCAACGGTTATAAAATAAGATGCAAAaactattttctact
tttttgtcCAGGGGTAGAATGTGCACTTTCCATTATAACATCATGTGTAA
TTTCTTATTCAGTCCATTCAACATAACCCCCGGATCTCTttggaaagaaa
tttgtcataattgaatatgttttatttaaaattgttGTGGGAATTAGCAA
TCTACATGTTCAAAATCCCTGTACCTAAATGAAAATGAATGGACCATATT
AATACGCTAATTCCCCATAATTTCTTTTAGAATAGCAAAAACATTGaagt
aaaaagctgttttaaAGTTTTACCAAGTTTTGCAAAATCAATAACATATA
GCTTAGAAAAGTATAAGAATGGTCAAAGCACACCCCTGCCTCTCTACCTA
CGGGCATCAAATAGTCAGCGGGGCGAACTTAAAGATCTTCAAACCCACTG
GGGTGGGCCAAACGGTTatgttttttcaaattattttcggTGGGATGAAT
CtttaagatttttaattttacaactgGGTTGAGAAGAAGACTCAGATTTT
CCACTGGGGTGATAATTTTCTCACACGGGCgaaaaaagctaaaacttaTT
AAAAGTTATTAAAAGGAAAAACTATTACCTTTACCTTATCTTATAAGTAT
GTTTCCAGCAGAAAATTCATTCATACATTAAAAATATTCGTCGgctgaaa
atttcgtcactagcgagaaattttgtcacttttaGACGACGAATTCCCCG
TCGATAATGTACTTATTTCAATGACAATCATTTCAACTTTGGAGCTGTAA
TGAtgaaattttcttgatttttaggTATAACTATGATGACCGTGAAGAAA
GAATGACATGGAGGGAAGATGTAAGCTACTTTGCTtcgctttttttttca
aaaataagtgAAGTCGTTTCAGTTTTGCCAAACCCGCCAGAATGTACGGT
TATTTTATACGTTAATATTGGTTTCTTTAATCTAGGATGCAAGTTGGAAC
CCCCGTCAAATTGATGACTGTCAAGGTTGTAAGGTAAAtgtgatattttt
tattgagaTATAGCTTATTGCATGAAAATTTCGCGGTCGAGTTCggaaaa
tcgcgaaattaaaatgtcgtgaaaaaagattttggagcttgaccgcgaaa
ttaaaatgcattgaaatttgattttttgggtcaaccgaaaaaaaacccta
aaaatagagtatttgcaaaaaatacaaaaatcaagTAAAAACTCTCTCga
accaaaaattaaaatgccGTGAAATTCACATTTTGGCTTGAACCGTGAAA
TTAAAATgacgcgaaatgcaattttgggcaaaaaaacgGCGAAATTAAAA
TGATCGCGAAATTTTAATGCCGGAAATTTTCATACAATAAGTACAGtatg
atacacccctgtctctgtgccccAGTGGGTACTAGATACTAAATGGGGTG
AAACTCATAACTTTTAATCCTACTGGGGTGGGTCAAATGGAAATGTTTTT
CTAGTGGGGTCGTAAATTTCTATTGCTTTTTTGTCACATTTTCAGTGGGG
TGgctctttgtattttttttgttttacctCTGGGGTGAGAGAGAATATCC
AATTGTCCACTGGGGTGAGCATTTTGTCCACTGGGGTGAAAAATGGACCT
GTTTTAATCAATATTTCCACTGGGGTGACCAGTGGGGCAGATCTCAGTGG
GTCATATAGATATGACCGTATTAATCTACCCTTTCACAAATTCAGAAACC
TACAAAAGCTTTAAAACCTAAAGAAACTATTATTTTATAGGGCTTGACCC
ATGATGACCATGGTGACTGCGATGACGGCGATGCTGATGATGAAAGTGAG
TTTGATAATTGATTCTGTCTTACACCTTAAATAAAGGATGCGAAAATTTG
CACGTATTGATCTTAGTGTacgaaggaaatatttttcgcgcATATTGAAT
TTCGCTCACGAGCAAAGTTAGTTTGCAGTTATTTTCGCGCATGGAGCATT
TTTAACCTGAAAggactttttcaaaatattttggaaggaTTTTGCAAAAT
GTTGTATTAGTTTTGGTACTAAATTTGGCGCATTTTCGGGCTTATGCGCG
GTAATTAGTACACTTTAGGTATAAcagattttctttgttttgtgcCTTGT
TTTTCACTCTAAATTTAATTAAGCTACTTTGATAtcagattttctttatt
ttttactcTTTATTCAGGTGAACACCACAATTTCAATTCAACGGTTATTG
GAATAGATGAGGTAATTAGGAAAATAGATATAAACTGTTTTTGTGGGCGG
CTATAGTGTCATCCTCCCACTTTCtgcaggtttttgaaaatttcaaaaag
gggAGGGGGATTCTGTGTTTCTGAATTtaattctcttttctttttttctg
atatttctgattatttcatttgaaaactTTATCGAGTCATAACATAAATT
TTTACGCTCGTTTCATTGACTTTAATTGAGAGGAGAGCTAGCCATCGAGT
AGACCAAAAAGCGATTTTTAATGAGATTTTCAGTCGGGGCTAGGCTAAAA
GAGGTCACCCCTCTTTTGCAGGGGTGGGGTGAAACCCTGGACGACACTTC
AATTAACTATTTTTTTCACTCAGGAAACCGATAATCATGTATCATTCTCG
TTATTGAATCTACTAGACCCCACAAATATCATATGTAAAAAGTGTCATCG
GCTCGTGGGTTTATCGTGGGAtagtgggtttagttggttatTACCAAGTC
TATATTTATACGTAAGGTCGTGGGTTGAAAAACCCTTCAAAATTATTTCA
CCGACGAACCCACGTAAAATATTAACCCACGATTcttttaaaatagaaaa
tagaaatattgttttaaattgACACACTGTTGGCCCTTTTCGTTTAgttc
attgaaatttttggacctTCATGGAGGTCCTacaaattaacctttgtccg
tccgttttTAGTTATTTACCAGATTTTTTCAAGATgagctcattagtttt
ttttctgaattttggtACAAATATGAAAAATGGTAAACCCTGGAAtctga
cgaagcccgattttttAGGGCTAATTTTGGCCCAAATACCATTATAAGTA
TCATAATAAATTTAAggcttaaattttctttttcaatgtccagtatgtta
ttttgaatgtcTATTATTCCTTGTTCATTAAAATAACCAGGTAGTATCGC
TTGTTTAATATGTGGTTTTACTTTTTCTagactttagtgaaaattgatGA
TGCCAAATTGACCAAAATGGTTAAAGATTTGATCGGTACTGTGGAAGAGA
TTTTAAATCAGAAGGtattcat

Coding sequence (CDS) from alignment at sc0000782:100852..105473+

>TCONS_00030010 ID=TCONS_00030010|Name=TCONS_00030010|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000782:100852..105473+ (Clytia hemisphaerica)
AAAATCTTCTTGGCAATAAAATCACTCAATAAGAAAATTCCACAAGGCAC
AGAGCTTAGgTATAACTATGATGACCGTGAAGAAAGAATGACATGGAGGG
AAGATGATGCAAGTTGGAACCCCCGTCAAATTGATGACTGTCAAGGTTGT
AAGGGCTTGACCCATGATGACCATGGTGACTGCGATGACGGCGATGCTGA
TGATGAAAGTGAACACCACAATTTCAATTCAACGGTTATTGGAATAGATG
AGactttagtgaaaattgatGATGCCAAATTGACCAAAATGGTTAAAGAT
TTGATCGGTACTGTGGAAGAGATTTTAAATCAGAAGGtattcAAAATCTT
CTTGGCAATAAAATCACTCAATAAGAAAATTCCACAAGGCACAGAGCTTA
GgTATAACTATGATGACCGTGAAGAAAGAATGACATGGAGGGAAGATGAT
GCAAGTTGGAACCCCCGTCAAATTGATGACTGTCAAGGTTGTAAGGGCTT
GACCCATGATGACCATGGTGACTGCGATGACGGCGATGCTGATGATGAAA
GTGAACACCACAATTTCAATTCAACGGTTATTGGAATAGATGAGacttta
gtgaaaattgatGATGCCAAATTGACCAAAATGGTTAAAGATTTGATCGG
TACTGTGGAAGAGATTTTAAATCAGAAGGtattcAAAATCTTCTTGGCAA
TAAAATCACTCAATAAGAAAATTCCACAAGGCACAGAGCTTAGgTATAAC
TATGATGACCGTGAAGAAAGAATGACATGGAGGGAAGATGATGCAAGTTG
GAACCCCCGTCAAATTGATGACTGTCAAGGTTGTAAGGGCTTGACCCATG
ATGACCATGGTGACTGCGATGACGGCGATGCTGATGATGAAAGTGAACAC
CACAATTTCAATTCAACGGTTATTGGAATAGATGAGactttagtgaaaat
tgatGATGCCAAATTGACCAAAATGGTTAAAGATTTGATCGGTACTGTGG
AAGAGATTTTAAATCAGAAGGtattcAAAATCTTCTTGGCAATAAAATCA
CTCAATAAGAAAATTCCACAAGGCACAGAGCTTAGgTATAACTATGATGA
CCGTGAAGAAAGAATGACATGGAGGGAAGATGATGCAAGTTGGAACCCCC
GTCAAATTGATGACTGTCAAGGTTGTAAGGGCTTGACCCATGATGACCAT
GGTGACTGCGATGACGGCGATGCTGATGATGAAAGTGAACACCACAATTT
CAATTCAACGGTTATTGGAATAGATGAGactttagtgaaaattgatGATG
CCAAATTGACCAAAATGGTTAAAGATTTGATCGGTACTGTGGAAGAGATT
TTAAATCAGAAGGtattcAAAATCTTCTTGGCAATAAAATCACTCAATAA
GAAAATTCCACAAGGCACAGAGCTTAGgTATAACTATGATGACCGTGAAG
AAAGAATGACATGGAGGGAAGATGATGCAAGTTGGAACCCCCGTCAAATT
GATGACTGTCAAGGTTGTAAGGGCTTGACCCATGATGACCATGGTGACTG
CGATGACGGCGATGCTGATGATGAAAGTGAACACCACAATTTCAATTCAA
CGGTTATTGGAATAGATGAGactttagtgaaaattgatGATGCCAAATTG
ACCAAAATGGTTAAAGATTTGATCGGTACTGTGGAAGAGATTTTAAATCA
GAAGGtattcAAAATCTTCTTGGCAATAAAATCACTCAATAAGAAAATTC
CACAAGGCACAGAGCTTAGgTATAACTATGATGACCGTGAAGAAAGAATG
ACATGGAGGGAAGATGATGCAAGTTGGAACCCCCGTCAAATTGATGACTG
TCAAGGTTGTAAGGGCTTGACCCATGATGACCATGGTGACTGCGATGACG
GCGATGCTGATGATGAAAGTGAACACCACAATTTCAATTCAACGGTTATT
GGAATAGATGAGactttagtgaaaattgatGATGCCAAATTGACCAAAAT
GGTTAAAGATTTGATCGGTACTGTGGAAGAGATTTTAAATCAGAAGGtat
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017160XLOC_017160Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030010-proteinTCONS_00030010-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030010-exon-sc0000782-1491911889:100852..100911TCONS_00030010-exon-sc0000782-1491911889:100852..100911Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1510915933:100852..100911TCONS_00030010-exon-sc0000782-1510915933:100852..100911Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1575043694:100852..100911TCONS_00030010-exon-sc0000782-1575043694:100852..100911Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1491911889:102976..103021TCONS_00030010-exon-sc0000782-1491911889:102976..103021Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1510915933:102976..103021TCONS_00030010-exon-sc0000782-1510915933:102976..103021Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1575043694:102976..103021TCONS_00030010-exon-sc0000782-1575043694:102976..103021Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1491911889:103137..103184TCONS_00030010-exon-sc0000782-1491911889:103137..103184Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1510915933:103137..103184TCONS_00030010-exon-sc0000782-1510915933:103137..103184Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1575043694:103137..103184TCONS_00030010-exon-sc0000782-1575043694:103137..103184Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1491911889:103942..103996TCONS_00030010-exon-sc0000782-1491911889:103942..103996Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1510915933:103942..103996TCONS_00030010-exon-sc0000782-1510915933:103942..103996Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1575043694:103942..103996TCONS_00030010-exon-sc0000782-1575043694:103942..103996Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1491911889:104369..104412TCONS_00030010-exon-sc0000782-1491911889:104369..104412Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1510915933:104369..104412TCONS_00030010-exon-sc0000782-1510915933:104369..104412Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1575043694:104369..104412TCONS_00030010-exon-sc0000782-1575043694:104369..104412Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1491911889:105382..105473TCONS_00030010-exon-sc0000782-1491911889:105382..105473Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1510915933:105382..105473TCONS_00030010-exon-sc0000782-1510915933:105382..105473Clytia hemisphaericaexon
TCONS_00030010-exon-sc0000782-1575043694:105382..105473TCONS_00030010-exon-sc0000782-1575043694:105382..105473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000782supercontigsc0000782:100852..105473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.18193	4.40934	3.80023	5.17094	3.71262	1.68762	1.05716	3.26171	3.47135	1.35131	0	0	0	0	0	0	0	0	0	0	0	2.05458	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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