TCONS_00030012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030012
Unique NameTCONS_00030012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030012 ID=TCONS_00030012|Name=TCONS_00030012|organism=Clytia hemisphaerica|type=transcript|length=362bp
CAAAATCTTCTTGGCAATAAAATCACTCAATAAGAAAATTCCACAAGGCA
CAGAGCTTAGgTATAACTATGATGACCGTGAAGAAAGAATGACATGGAGG
GAAGATGATGCAAGTTGGAACCCCCGTCAAATTGATGACTGTCAAGGTTG
TAAGAAACTATTATTTTATAGGGCTTGACCCATGATGACCATGGTGACTG
CGATGACGGCGATGCTGATGATGAAAGTGAACACCACAATTTCAATTCAA
CGGTTATTGGAATAGATGAGactttagtgaaaattgatGATGCCAAATTG
ACCAAAATGGTTAAAGATTTGATCGGTACTGTGGAAGAGATTTTAAATCA
GAAGGtattcat
Run BLAST on NCBI

transcript from alignment at sc0000782:100852..107211+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030012 ID=TCONS_00030012|Name=TCONS_00030012|organism=Clytia hemisphaerica|type=transcript|length=6360bp|location=Sequence derived from alignment at sc0000782:100852..107211+ (Clytia hemisphaerica)
CAAAATCTTCTTGGCAATAAAATCACTCAATAAGAAAATTCCACAAGGCA
CAGAGCTTAGGTATGTGAGATTCGTATTCCATTTTTAATAAACACACCCT
TGTGTGACAGATCCGGTTAGGACCCCCGCCCCACTGGAATAATAAGCAAA
TTTTACACTGCACTGCAAGTGTCGGAATTTGAATGTCCAATTTTTGGCCC
TGTCGTTTTTAAATCgagtgacccccccccccccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccc
cccccccggcaacAGAAtggtttttcttcaatttcattGCACTGGCTAAA
ACGTTCTCCTGTTAGTGAGACCGATCCTGATACAAATGATGATGCTTTAA
GTAAATGATTTCTAAGACACGCCAAGCAGCTAAAGTTTAACATAAAGGGT
GACACTAGTCATTTCCAAGCACAAGACGGATCCATAAGGTTTCAATATAA
CTGACAGTTTTGCGTTCGTCTATTTTGATGTTAGAATATCACTCTCCATA
GATTTTGAAACCCTTTTCAAAATTGAtctgaaaatgttttctttttgtag
acctttactttttaaatattgtaatttttagCTTCTTTATCCTCTTCTTG
gctaaaatttaaagaaaaatctttaaatttgatttgctcctcatttaatt
tttagaatttaaaaaatattgtacggaaaacaACTTCGAGGATTATTATC
GCCCGTTCACTTTCATTTGGGTAATCgttaaaaaatgatatatttaTTTA
ATGCGTGCAGGCAACGGTTATAAAATAAGATGCAAAaactattttctact
tttttgtcCAGGGGTAGAATGTGCACTTTCCATTATAACATCATGTGTAA
TTTCTTATTCAGTCCATTCAACATAACCCCCGGATCTCTttggaaagaaa
tttgtcataattgaatatgttttatttaaaattgttGTGGGAATTAGCAA
TCTACATGTTCAAAATCCCTGTACCTAAATGAAAATGAATGGACCATATT
AATACGCTAATTCCCCATAATTTCTTTTAGAATAGCAAAAACATTGaagt
aaaaagctgttttaaAGTTTTACCAAGTTTTGCAAAATCAATAACATATA
GCTTAGAAAAGTATAAGAATGGTCAAAGCACACCCCTGCCTCTCTACCTA
CGGGCATCAAATAGTCAGCGGGGCGAACTTAAAGATCTTCAAACCCACTG
GGGTGGGCCAAACGGTTatgttttttcaaattattttcggTGGGATGAAT
CtttaagatttttaattttacaactgGGTTGAGAAGAAGACTCAGATTTT
CCACTGGGGTGATAATTTTCTCACACGGGCgaaaaaagctaaaacttaTT
AAAAGTTATTAAAAGGAAAAACTATTACCTTTACCTTATCTTATAAGTAT
GTTTCCAGCAGAAAATTCATTCATACATTAAAAATATTCGTCGgctgaaa
atttcgtcactagcgagaaattttgtcacttttaGACGACGAATTCCCCG
TCGATAATGTACTTATTTCAATGACAATCATTTCAACTTTGGAGCTGTAA
TGAtgaaattttcttgatttttaggTATAACTATGATGACCGTGAAGAAA
GAATGACATGGAGGGAAGATGTAAGCTACTTTGCTtcgctttttttttca
aaaataagtgAAGTCGTTTCAGTTTTGCCAAACCCGCCAGAATGTACGGT
TATTTTATACGTTAATATTGGTTTCTTTAATCTAGGATGCAAGTTGGAAC
CCCCGTCAAATTGATGACTGTCAAGGTTGTAAGGTAAAtgtgatattttt
tattgagaTATAGCTTATTGCATGAAAATTTCGCGGTCGAGTTCggaaaa
tcgcgaaattaaaatgtcgtgaaaaaagattttggagcttgaccgcgaaa
ttaaaatgcattgaaatttgattttttgggtcaaccgaaaaaaaacccta
aaaatagagtatttgcaaaaaatacaaaaatcaagTAAAAACTCTCTCga
accaaaaattaaaatgccGTGAAATTCACATTTTGGCTTGAACCGTGAAA
TTAAAATgacgcgaaatgcaattttgggcaaaaaaacgGCGAAATTAAAA
TGATCGCGAAATTTTAATGCCGGAAATTTTCATACAATAAGTACAGtatg
atacacccctgtctctgtgccccAGTGGGTACTAGATACTAAATGGGGTG
AAACTCATAACTTTTAATCCTACTGGGGTGGGTCAAATGGAAATGTTTTT
CTAGTGGGGTCGTAAATTTCTATTGCTTTTTTGTCACATTTTCAGTGGGG
TGgctctttgtattttttttgttttacctCTGGGGTGAGAGAGAATATCC
AATTGTCCACTGGGGTGAGCATTTTGTCCACTGGGGTGAAAAATGGACCT
GTTTTAATCAATATTTCCACTGGGGTGACCAGTGGGGCAGATCTCAGTGG
GTCATATAGATATGACCGTATTAATCTACCCTTTCACAAATTCAGAAACC
TACAAAAGCTTTAAAACCTAAAGAAACTATTATTTTATAGGGCTTGACCC
ATGATGACCATGGTGACTGCGATGACGGCGATGCTGATGATGAAAGTGAG
TTTGATAATTGATTCTGTCTTACACCTTAAATAAAGGATGCGAAAATTTG
CACGTATTGATCTTAGTGTacgaaggaaatatttttcgcgcATATTGAAT
TTCGCTCACGAGCAAAGTTAGTTTGCAGTTATTTTCGCGCATGGAGCATT
TTTAACCTGAAAggactttttcaaaatattttggaaggaTTTTGCAAAAT
GTTGTATTAGTTTTGGTACTAAATTTGGCGCATTTTCGGGCTTATGCGCG
GTAATTAGTACACTTTAGGTATAAcagattttctttgttttgtgcCTTGT
TTTTCACTCTAAATTTAATTAAGCTACTTTGATAtcagattttctttatt
ttttactcTTTATTCAGGTGAACACCACAATTTCAATTCAACGGTTATTG
GAATAGATGAGGTAATTAGGAAAATAGATATAAACTGTTTTTGTGGGCGG
CTATAGTGTCATCCTCCCACTTTCtgcaggtttttgaaaatttcaaaaag
gggAGGGGGATTCTGTGTTTCTGAATTtaattctcttttctttttttctg
atatttctgattatttcatttgaaaactTTATCGAGTCATAACATAAATT
TTTACGCTCGTTTCATTGACTTTAATTGAGAGGAGAGCTAGCCATCGAGT
AGACCAAAAAGCGATTTTTAATGAGATTTTCAGTCGGGGCTAGGCTAAAA
GAGGTCACCCCTCTTTTGCAGGGGTGGGGTGAAACCCTGGACGACACTTC
AATTAACTATTTTTTTCACTCAGGAAACCGATAATCATGTATCATTCTCG
TTATTGAATCTACTAGACCCCACAAATATCATATGTAAAAAGTGTCATCG
GCTCGTGGGTTTATCGTGGGAtagtgggtttagttggttatTACCAAGTC
TATATTTATACGTAAGGTCGTGGGTTGAAAAACCCTTCAAAATTATTTCA
CCGACGAACCCACGTAAAATATTAACCCACGATTcttttaaaatagaaaa
tagaaatattgttttaaattgACACACTGTTGGCCCTTTTCGTTTAgttc
attgaaatttttggacctTCATGGAGGTCCTacaaattaacctttgtccg
tccgttttTAGTTATTTACCAGATTTTTTCAAGATgagctcattagtttt
ttttctgaattttggtACAAATATGAAAAATGGTAAACCCTGGAAtctga
cgaagcccgattttttAGGGCTAATTTTGGCCCAAATACCATTATAAGTA
TCATAATAAATTTAAggcttaaattttctttttcaatgtccagtatgtta
ttttgaatgtcTATTATTCCTTGTTCATTAAAATAACCAGGTAGTATCGC
TTGTTTAATATGTGGTTTTACTTTTTCTagactttagtgaaaattgatGA
TGCCAAATTGACCAAAATGGTTAAAGATTTGATCGGTACTGTGGAAGAGA
TTTTAAATCAGAAGGtattcatgatttttttctaatctTCAAATATTCAA
TTCCTATAAGTCCTTTAAAAATTGTGCATCTTCTTTGAAAACGAGACCTT
CTTCAGCTGATTTTTGATGCGCAGTAGAAACCGAAAAGTTGACGAGTTAA
AGAAAGCCAGGGGACAACTAACCTGGACGACTGACGGGGACGTGCCCTTG
TGGTGATCGAAAATCAGACCATGTGAGATcaacatttttgagaaatcttc
gaaaagctTGATATTTGGAGCCGAAGccgaaaactttttcaaataccTTT
TCAGACACCTTTTCAGAGACAAAGATGACAAAAAACCAACCAACTCTGTC
AGAgcaattttttaaccttttttgattttggagtATTGTCAGAACTCTTG
TCGAATTTCGGTCAATATTAAGAAACAATGGAATataacatgaaaacatg
aaaaaaatagATCATGAAAAATAATGTATTTTTGCGTTCTTTTCTCTGGG
ACTTTCCGCTGGTCAGGGTTCCATTTTTTAGGCTctaaagatatctgaca
gggttgcAAAAACTAGGATATCAAAAACAGTATATGTTAAATTCCACTAT
CAGACAGGATCTAATTTCGTCTTTCAGGGTCCGAGTTTTACCTTAccttt
aaattttaatttatatcTGACAAAGCCCACTTTTTCAAACCCCAGTGATA
CGTCCCGTTCGGTNAGATATAAACTGTTTTTGTGGGCGGCTATAGTGTCC
TCCTCCCACTTTCtgcaggtttttgaaaatttcaaaaaggggAGGGGGCT
CTGTGTTTCTGAATTtaattctcttttctttttttctgatatttctgatt
atttcatttgaaaactTTATCGAGTCATAACATAAATTTTTACGCTTGTT
TCATTGACTTTAATTGAGAGGAGAGCTAGCCATCGAGGAGACCAAAAAGC
GATTTTTAATGAGATTTTCAGTGGGGGCTAGGCTAAAAGGGGTCACCACT
CTTTTGCAGGTGCGGGGTGAAACCCTGGACGACACTTCAATTAACTATTT
TTTTCACTCAGGAAACCGATAATCATGTATAATTCTCGTTATTGAATCTA
CTAGACCCCACAAATATCATATGTAAAAAGTGTCATCGGCTCGTGGGTTT
ATCGTGGGAtagtgggtttagttggttatTACCAAGTCTATATTTATACG
TAAGGTCGTGGGTTGAAAAACCCTTCAAAATTATTTCACCGACGAACCCA
CGTAAAATATTAACCCACGATTcttttaaaatagaaaatagaaatattgt
tttaaattgACACACTGTTGGCCCTTTTCGTTTAgttcattgaaattttt
ggacctTCATGGAGGTCCTacaaattaacctttgtccgtccgttttTAGT
TATTTACCAGATTTTTTCAAGATgagctcattagttttttttctgaattt
tggtACAAATATGAAAAATGGTAAACCCTGGAAtctgacgaagcccgatt
ttttAGGGCTAATTTTGGCCCAAATACCATTATAAGTATCATAATAAATT
TAAggcttaaattttctttttcaatgtccagtatgttattttgaatgtcT
ATTATTCCTTGTTCATTAAAATAACCAGGTAGTATCGCTTGTTTAATATG
TGGTTTTACTTTTTCTagactttagtgaaaattgatGATGCCAAATTGAC
CAAAATGGTTAAAGATTTGATCGGTACTGTGGAAGAGATTTTAAATCAGA
AGGtattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017160XLOC_017160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030012-exon-sc0000782-1491911889:100852..100911TCONS_00030012-exon-sc0000782-1491911889:100852..100911Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1510915933:100852..100911TCONS_00030012-exon-sc0000782-1510915933:100852..100911Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1575043694:100852..100911TCONS_00030012-exon-sc0000782-1575043694:100852..100911Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1491911889:102976..103021TCONS_00030012-exon-sc0000782-1491911889:102976..103021Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1510915933:102976..103021TCONS_00030012-exon-sc0000782-1510915933:102976..103021Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1575043694:102976..103021TCONS_00030012-exon-sc0000782-1575043694:102976..103021Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1491911889:103137..103184TCONS_00030012-exon-sc0000782-1491911889:103137..103184Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1510915933:103137..103184TCONS_00030012-exon-sc0000782-1510915933:103137..103184Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1575043694:103137..103184TCONS_00030012-exon-sc0000782-1575043694:103137..103184Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1491911889:103925..103996TCONS_00030012-exon-sc0000782-1491911889:103925..103996Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1510915933:103925..103996TCONS_00030012-exon-sc0000782-1510915933:103925..103996Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1575043694:103925..103996TCONS_00030012-exon-sc0000782-1575043694:103925..103996Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1491911889:104369..104412TCONS_00030012-exon-sc0000782-1491911889:104369..104412Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1510915933:104369..104412TCONS_00030012-exon-sc0000782-1510915933:104369..104412Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1575043694:104369..104412TCONS_00030012-exon-sc0000782-1575043694:104369..104412Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1491911889:107120..107211TCONS_00030012-exon-sc0000782-1491911889:107120..107211Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1510915933:107120..107211TCONS_00030012-exon-sc0000782-1510915933:107120..107211Clytia hemisphaericaexon
TCONS_00030012-exon-sc0000782-1575043694:107120..107211TCONS_00030012-exon-sc0000782-1575043694:107120..107211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000782supercontigsc0000782:100852..107211 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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