TCONS_00030017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030017
Unique NameTCONS_00030017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030017 ID=TCONS_00030017|Name=TCONS_00030017|organism=Clytia hemisphaerica|type=transcript|length=320bp
aagagcccaattagTAGATTTGATTTAGACTCTActtttctgaaattgat
ttaGACTCTACTTTTCTGAAATTGATATATCATTGTGAAACAAGAAATTT
GACATACATGTCTGTTCTGCTCCACTCGTTAGCCGTCTTAAAgcggaaaa
tctttttgaattcACTCGTGGCTGCTTCGGCAGTATGGAAGGGAGTTTGT
TGGTGTTGTCCTTCAAAGAAGCCCACACGCCCCCATCGGTTGAATAAGAT
GTACAATCCTTTCGCTTTGTGATGAATGACCTGTAAGAAAAGACCAAACG
AATTTGGATACAAGGATAGA
Run BLAST on NCBI

transcript from alignment at sc0000782:22220..22539

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030017 ID=TCONS_00030017|Name=TCONS_00030017|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0000782:22220..22539 (Clytia hemisphaerica)
TCTATCCTTGTATCCAAATTCGTTTGGTCTTTTCTTACAGGTCATTCATC
ACAAAGCGAAAGGATTGTACATCTTATTCAACCGATGGGGGCGTGTGGGC
TTCTTTGAAGGACAACACCAACAAACTCCCTTCCATACTGCCGAAGCAGC
CACGAGTgaattcaaaaagattttccgcTTTAAGACGGCTAACGAGTGGA
GCAGAACAGACATGTATGTCAAATTTCTTGTTTCACAATGATATATCAAT
TTCAGAAAAGTAGAGTCtaaatcaatttcagaaaagTAGAGTCTAAATCA
AATCTActaattgggctctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017162XLOC_017162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030017-exon-sc0000782-1491911889:22220..22539TCONS_00030017-exon-sc0000782-1491911889:22220..22539Clytia hemisphaericaexon
TCONS_00030017-exon-sc0000782-1510915933:22220..22539TCONS_00030017-exon-sc0000782-1510915933:22220..22539Clytia hemisphaericaexon
TCONS_00030017-exon-sc0000782-1575043694:22220..22539TCONS_00030017-exon-sc0000782-1575043694:22220..22539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000782supercontigsc0000782:22220..22539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.34056	0.821742	0.384652	0.548831	3.02758	1.64952	0.648477	0.645769	2.46382	0.725873	0	0.246906	0.983591	0.339721	1.77747	0	0	0	0	0.343119	1.83735	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top