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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030019 ID=TCONS_00030019|Name=TCONS_00030019|organism=Clytia hemisphaerica|type=transcript|length=1906bp
CCTCAAacccgtctcaccgatccactgagcccttgcgacgcaagtccatt
gcgaacgaaTGAGGCCGCCCTTGCGGGACGCCTCGCCTTTAGCGTTGTGT
TACACTCTGATCGAATACACCCTTATAAtattattatttgaatgcaatCT
GAACAGTTTTGGCCcaattttcacttgtggttttctttacgcatgcgtag
taCAAGGGTGGGAATTGTACCTTCCCACCGTGTTAATTTGACTTTCCCAC
CCGGGGGAACTAATGACTGCGATTTCTTGTTTCTATCTTGTCTTTCTacg
tttttagagttttgtagtGTAAGTTTTATACTTCTTGGACTATAGTTGCC
AGTGTTTGACAAAgtgttaaattggatttcacacGCCGAAAATTTATAGT
GTACAACAtactgaaaagttttatttgccTGCGGAAATTAGAATTAACAC
GTGTGATTTTGATGAAGCCTTTTCAGTGAAGTTTTAAAgtgttaaattgg
atttcacacGCCGAAAATTTAAAGTGTACAACATGCTGAAAACGTTATTT
GCCTGCGAAAATTAGAAATCACACGTGTCATTTCAATAAAGCCTTTTCAG
TGAAGTTTAAAAGTGTTGAATTGGATTTCACACgccgaatttaaaaaaat
aaaaataactatttgaaaaattccGCAGTGTGATATCGGAAATCACACTG
CCAAAACAATCACACCTTATCAGTTTATAAAATCACacgcaaaaattgat
ttttgaaaattacaccGTCGGAATTTAAGTTTTCCCACCCGTGTGATCTG
ATGACTTTATCCTGTGAGCATGCTCTTACTAAGTCAGTATATATCATTGT
GCTATCATTTTCATGATGTTTTGATTTAACGAGTTTAATTcctgatatgc
gtaagtcaagatgacgtcatattttttaacgaaagcacccaaaaaagccg
gtttttgacctctgtgtttctatttttagtaacagagagaggtcaaatta
cggcttttttagggtgtttccgctaaAAAAATggcttacgcatatcaaga
attcaaTGTAATCTTCAGTACTTCTGTTCAGtactacaaaatatttttta
taataccgtattacttcgaataaacgccccggtcgtttaaattttttgga
gttcaggaggggtgtttattggagaggggtgtttatttgaagtaatatat
GGTATTCATTTTAGCcattcattatttttcattcattcgtttttttcatt
ttattcattcattcatgaNcttcgaataaacgcccggtcgtttaaatttt
gttcaggaggggcgtttatttgaagtaaCATGGTATTCATTTTAACcatt
cattatttttcattcattcattttcttcattcgttttcttcatttaattc
attcattcatgttgttttgtaagtttttatcacttatttcatttttaata
atttttgtaCTTGATTTAATGTTTATGCTGTCCTTAATTTATACAAATTT
GATGATATTgtaattttgatattattttgtaACTTAAATTAATAATTTAA
CTTTCTTATCTGTaggaaaagtttttgaatttgaatcaaaatttccaatt
ttaatACAGCCTTGAGATCCTTTGAAGTGTTAAAAAATGATATACCGTTA
TCACGTGATGATatgactctctctctaattcgaactggAACGGGCAATCT
TATTCGTTCGAATTACCGAGAGCCTCAAAttttagaaagtattttaactt
tAAGAGAGTTTTTCCTTGACGGGGGACTGTGGATAAGTTTGATTCGTAGg
aagattcaaataatagaatTTCGAATAAGCGAGATACTACTGTACTTACA
TTTTGTCAATCAATAAGTCATGCGAGAATATAATACTTTAAAAACCTAAA
CAatag Run BLAST on NCBI transcript from alignment at sc0000782:40851..42756 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030019 ID=TCONS_00030019|Name=TCONS_00030019|organism=Clytia hemisphaerica|type=transcript|length=1906bp|location=Sequence derived from alignment at sc0000782:40851..42756 (Clytia hemisphaerica)
ctatTGTTTAGGTTTTTAAAGTATTATATTCTCGCATGACTTATTGATTG
ACAAAATGTAAGTACAGTAGTATCTCGCTTATTCGAAattctattatttg
aatcttcCTACGAATCAAACTTATCCACAGTCCCCCGTCAAGGAAAAACT
CTCTTaaagttaaaatactttctaaaaTTTGAGGCTCTCGGTAATTCGAA
CGAATAAGATTGCCCGTTccagttcgaattagagagagagtcatATCATC
ACGTGATAACGGTATATCATTTTTTAACACTTCAAAGGATCTCAAGGCTG
TattaaaattggaaattttgattcaaattcaaaaacttttcctACAGATA
AGAAAGTTAAATTATTAATTTAAGTtacaaaataatatcaaaattacAAT
ATCATCAAATTTGTATAAATTAAGGACAGCATAAACATTAAATCAAGtac
aaaaattattaaaaatgaaataagtgataaaaacttacaaaacaacatga
atgaatgaattaaatgaagaaaacgaatgaagaaaatgaatgaatgaaaa
ataatgaatgGTTAAAATGAATACCATGttacttcaaataaacgcccctc
ctgaacaaaatttaaacgaccgggcgtttattcgaagNtcatgaatgaat
gaataaaatgaaaaaaacgaatgaatgaaaaataatgaatgGCTAAAATG
AATACCatatattacttcaaataaacacccctctccaataaacacccctc
ctgaactccaaaaaatttaaacgaccggggcgtttattcgaagtaatacg
gtattataaaaaatattttgtagtaCTGAACAGAAGTACTGAAGATTACA
ttgaattcttgatatgcgtaagccATTTTTttagcggaaacaccctaaaa
aagccgtaatttgacctctctctgttactaaaaatagaaacacagaggtc
aaaaaccggcttttttgggtgctttcgttaaaaaatatgacgtcatcttg
acttacgcatatcaggAATTAAACTCGTTAAATCAAAACATCATGAAAAT
GATAGCACAATGATATATACTGACTTAGTAAGAGCATGCTCACAGGATAA
AGTCATCAGATCACACGGGTGGGAAAACTTAAATTCCGACggtgtaattt
tcaaaaatcaatttttgcgtGTGATTTTATAAACTGATAAGGTGTGATTG
TTTTGGCAGTGTGATTTCCGATATCACACTGCggaatttttcaaatagtt
atttttatttttttaaattcggcGTGTGAAATCCAATTCAACACTTTTAA
ACTTCACTGAAAAGGCTTTATTGAAATGACACGTGTGATTTCTAATTTTC
GCAGGCAAATAACGTTTTCAGCATGTTGTACACTTTAAATTTTCGGCgtg
tgaaatccaatttaacacTTTAAAACTTCACTGAAAAGGCTTCATCAAAA
TCACACGTGTTAATTCTAATTTCCGCAggcaaataaaacttttcagtaTG
TTGTACACTATAAATTTTCGGCgtgtgaaatccaatttaacacTTTGTCA
AACACTGGCAACTATAGTCCAAGAAGTATAAAACTTACactacaaaactc
taaaaacgtAGAAAGACAAGATAGAAACAAGAAATCGCAGTCATTAGTTC
CCCCGGGTGGGAAAGTCAAATTAACACGGTGGGAAGGTACAATTCCCACC
CTTGtactacgcatgcgtaaagaaaaccacaagtgaaaattgGGCCAAAA
CTGTTCAGattgcattcaaataataataTTATAAGGGTGTATTCGATCAG
AGTGTAACACAACGCTAAAGGCGAGGCGTCCCGCAAGGGCGGCCTCAttc
gttcgcaatggacttgcgtcgcaagggctcagtggatcggtgagacgggt
TTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030019-exon-sc0000782-1491911889:40851..42756 | TCONS_00030019-exon-sc0000782-1491911889:40851..42756 | Clytia hemisphaerica | exon |
| TCONS_00030019-exon-sc0000782-1510915933:40851..42756 | TCONS_00030019-exon-sc0000782-1510915933:40851..42756 | Clytia hemisphaerica | exon |
| TCONS_00030019-exon-sc0000782-1575043694:40851..42756 | TCONS_00030019-exon-sc0000782-1575043694:40851..42756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000782 | supercontig | sc0000782:40851..42756 . |
Blast
The following BLAST results are available for this feature:
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