TCONS_00030023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030023
Unique NameTCONS_00030023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030023 ID=TCONS_00030023|Name=TCONS_00030023|organism=Clytia hemisphaerica|type=transcript|length=285bp
ctttgtttttgaattgttgcAGATTTTCCGTTCGTAATTTTTATGGGCCT
GTGTCATCATTTTCGTCACTCGGTTGCGTACACGGGTGTATTTCACGCGA
TTTTCGTCTTTCTCTCGCAGCGATGATTTCATCCATTTTCTATGTAGACG
CTTTTTCTTTGCTATTTCAGTTCTGAGATCTTTTGGAATAGGAATTCTTC
CTCTCTTTCTCCAACCCTCGCCTCCAATCGTTTTGAGCGGGATGAAACGG
TTTTGCAATTCGTTTACTTTATTCTTGAAAACTTG
Run BLAST on NCBI

transcript from alignment at sc0000782:149019..149303

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030023 ID=TCONS_00030023|Name=TCONS_00030023|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at sc0000782:149019..149303 (Clytia hemisphaerica)
CAAGTTTTCAAGAATAAAGTAAACGAATTGCAAAACCGTTTCATCCCGCT
CAAAACGATTGGAGGCGAGGGTTGGAGAAAGAGAGGAAGAATTCCTATTC
CAAAAGATCTCAGAACTGAAATAGCAAAGAAAAAGCGTCTACATAGAAAA
TGGATGAAATCATCGCTGCGAGAGAAAGACGAAAATCGCGTGAAATACAC
CCGTGTACGCAACCGAGTGACGAAAATGATGACACAGGCCCATAAAAATT
ACGAACGGAAAATCTgcaacaattcaaaaacaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017168XLOC_017168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030023-exon-sc0000782-1491911889:149019..149303TCONS_00030023-exon-sc0000782-1491911889:149019..149303Clytia hemisphaericaexon
TCONS_00030023-exon-sc0000782-1510915933:149019..149303TCONS_00030023-exon-sc0000782-1510915933:149019..149303Clytia hemisphaericaexon
TCONS_00030023-exon-sc0000782-1575043694:149019..149303TCONS_00030023-exon-sc0000782-1575043694:149019..149303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000782supercontigsc0000782:149019..149303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40157	3.43149	4.70388	1.5201	0.154663	1.97664	1.78855	1.30905	0.913423	2.42013	1.29032	3.19648	1.07768	5.14559	1.67351	1.95272	2.26134	1.9692	3.18511	0.656392	0.789903	0	0	0	5.27381	1.33302	0.650733	0	0.905698	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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